BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G24761.1

Length=457
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg320288 jgi|Araly1|320288|fgenesh1_pm.C_scaffold_4000345           649    0.0  


> Ahg320288 jgi|Araly1|320288|fgenesh1_pm.C_scaffold_4000345
Length=456

 Score =  649 bits (351),  Expect = 0.0
 Identities = 425/460 (92%), Gaps = 7/460 (2%)
 Strand=Plus/Plus

Query  1    ATGATAAACTCATCTAAAGGAAATCTCATATCCACTATGTGCTCAAAATTTACTATCTCT  60
            |||||||||||||||||||||||||||||||||| ||||| |||||||||||| || |||
Sbjct  1    ATGATAAACTCATCTAAAGGAAATCTCATATCCATTATGTCCTCAAAATTTACAATTTCT  60

Query  61   ATAGTGGTGATAT-CTTTCATTTGTTCAGAAGCTCTAGAACACGATAGAGAACTGATTTC  119
            ||||||||||||| |||| |||||||||||||||||| |||| |||||| ||||||||||
Sbjct  61   ATAGTGGTGATATCCTTT-ATTTGTTCAGAAGCTCTACAACAAGATAGACAACTGATTTC  119

Query  120  AATAACAGGACCTCTCATGACAGTCTCGATCAAAAATGAAAATGACTATTATTTTGGAGT  179
             |||||||||||||||||||||||||| |||| |||||||||||| ||| || |||||| 
Sbjct  120  GATAACAGGACCTCTCATGACAGTCTCAATCATAAATGAAAATGATTATCATCTTGGAG-  178

Query  180  TCCATTGTAAATTTGCAGATAAAGATTTCGGTTTTCGCCTTCTTAAAAAAGGTGAAATAT  239
            ||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  179  TCCATTGTAAATCCGCAAATAAAGATTTCGGTTTTCGCCTTCTTAAAAAAGGTGAAATAT  238

Query  240  ATGAATGAAAATTTCATATTAATATT-ACGAAAACTACACTATATTTTTGTGGATTTAAT  298
            ||||||| |||||||||| |||| || |||||||||||||| ||||||||||||||| ||
Sbjct  239  ATGAATGGAAATTTCATAATAAT-TTGACGAAAACTACACTCTATTTTTGTGGATTTCAT  297

Query  299  GACGGACAGATAGATAAAGGTACTTTTGACATTTACATAGCGCTTAGAGA-TGAGGAAAG  357
            |||||||| ||||||||||||| |||||||||||||||||||||||| || |||||||||
Sbjct  298  GACGGACAAATAGATAAAGGTATTTTTGACATTTACATAGCGCTTAG-GAATGAGGAAAG  356

Query  358  ATGTAAAATTTGTACATGGGAAGCAGTAAAAGATGGTATTTATGGATATAGCGACAAACA  417
            ||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct  357  ATGTAAAATCTGTACATGGAAAGCAGTAAAAGATGGTATATATGGATATAGCGACAAACA  416

Query  418  TCCTCAACCAGCTTTACTGTTTTATAAGTGGTTAAAATAG  457
            |||| ||||||||||||| ||||| |||||||||||||||
Sbjct  417  TCCTGAACCAGCTTTACTATTTTACAAGTGGTTAAAATAG  456



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16521370037


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5