BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G24762.1 Length=792 Score E Sequences producing significant alignments: (Bits) Value Ahg481335 jgi|Araly1|481335|fgenesh2_kg.4__395__AT2G24762.1 723 0.0 > Ahg481335 jgi|Araly1|481335|fgenesh2_kg.4__395__AT2G24762.1 Length=526 Score = 723 bits (391), Expect = 0.0 Identities = 485/527 (92%), Gaps = 19/527 (4%) Strand=Plus/Plus Query 58 agaaaaaatctgagagaaacagaagaaaca-t---aaaaaaa-aTGAGGCCATTGAGCAT 112 |||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||| Sbjct 1 AGAAAAAATCTGAGAGAAACAGAAGAAACATTAAAAAAAAAATATGAGGCCATTGAGCAT 60 Query 113 TAAACCAACATCGTTAGATGTAGCTAGACATGCCACATCAGTAGAATCATTTGGGAATCA 172 |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| Sbjct 61 TAAACCAACATCGTTAGATGTAGCGAGACATGCCACATCAGTAGAATCATTCGGGAATCA 120 Query 173 CCGACCGCCGATATCGCCGTGGCACTCACCGGTGCCGTACCTATTCGGTGGTCTTGCGGC 232 ||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 121 CCGACCGCCGATATCTCCGTGGCACTCGCCGGTGCCTTACCTATTCGGTGGTCTTGCGGC 180 Query 233 GATGTTAGGCCTCATAGCCTTCGCTTTACTTATCCTAGCCTGCTCTTACTGGCGCTTGTC 292 |||||||||||||||| |||| |||||||||||||| |||||||||||||||||||| || Sbjct 181 GATGTTAGGCCTCATATCCTTTGCTTTACTTATCCTGGCCTGCTCTTACTGGCGCTTTTC 240 Query 293 AACCTCCGGTGATGACTCCGGCGAA---AG------AG---TCGACGAGGAAAAAGAGAG 340 ||| || ||||||||||||||||| || || |||||||||| |||||||| Sbjct 241 CACCACCAGTGATGACTCCGGCGAAGGCAGCGGCGGAGGAGTCGACGAGGAGAAAGAGAG 300 Query 341 TCGGTCTGGAGTGAAGGCGGCTAGCGCGGCGTGCGAGGAGAAGGTTCTTGTCATAATGGC 400 ||| |||||||||||||||| || ||||||| |||||||||| |||||||||||||||| Sbjct 301 TCGAACTGGAGTGAAGGCGGCGAGTGCGGCGTACGAGGAGAAGATTCTTGTCATAATGGC 360 Query 401 CGGAGATGACTTGCCGAGGTTTCTGGCCACGCCGGCGGCGAACAAATGCATGTGCGGTCA 460 ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 361 CGGAGATGATTTGCCGAGGTTTCTGGCCACGCCGGCGGCGAACAACTGCATGTGCGGTCA 420 Query 461 CGAGGGTAGAATGGTAATTT-TCAAGGAGGATGGTATTGGTGCTGGAGAGGAGAAAATGG 519 |||||||| ||||||||||| | |||||||||||||||||||||||||| |||||||||| Sbjct 421 CGAGGGTAAAATGGTAATTTCT-AAGGAGGATGGTATTGGTGCTGGAGAAGAGAAAATGG 479 Query 520 GAGACAGAGAGAAAGCCAAAGAAAATGAAGAAACAACGAGTCAGTGA 566 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 GAGACAGAGAGAAAGCCAAAGAAAATGAAGAAACAACGAGTCAGTGA 526 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29240277339 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5