BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G24762.1

Length=792
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg481335 jgi|Araly1|481335|fgenesh2_kg.4__395__AT2G24762.1          723    0.0  


> Ahg481335 jgi|Araly1|481335|fgenesh2_kg.4__395__AT2G24762.1
Length=526

 Score =  723 bits (391),  Expect = 0.0
 Identities = 485/527 (92%), Gaps = 19/527 (4%)
 Strand=Plus/Plus

Query  58   agaaaaaatctgagagaaacagaagaaaca-t---aaaaaaa-aTGAGGCCATTGAGCAT  112
            |||||||||||||||||||||||||||||| |   ||||||| |||||||||||||||||
Sbjct  1    AGAAAAAATCTGAGAGAAACAGAAGAAACATTAAAAAAAAAATATGAGGCCATTGAGCAT  60

Query  113  TAAACCAACATCGTTAGATGTAGCTAGACATGCCACATCAGTAGAATCATTTGGGAATCA  172
            |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct  61   TAAACCAACATCGTTAGATGTAGCGAGACATGCCACATCAGTAGAATCATTCGGGAATCA  120

Query  173  CCGACCGCCGATATCGCCGTGGCACTCACCGGTGCCGTACCTATTCGGTGGTCTTGCGGC  232
            ||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||
Sbjct  121  CCGACCGCCGATATCTCCGTGGCACTCGCCGGTGCCTTACCTATTCGGTGGTCTTGCGGC  180

Query  233  GATGTTAGGCCTCATAGCCTTCGCTTTACTTATCCTAGCCTGCTCTTACTGGCGCTTGTC  292
            |||||||||||||||| |||| |||||||||||||| |||||||||||||||||||| ||
Sbjct  181  GATGTTAGGCCTCATATCCTTTGCTTTACTTATCCTGGCCTGCTCTTACTGGCGCTTTTC  240

Query  293  AACCTCCGGTGATGACTCCGGCGAA---AG------AG---TCGACGAGGAAAAAGAGAG  340
             ||| || |||||||||||||||||   ||      ||   |||||||||| ||||||||
Sbjct  241  CACCACCAGTGATGACTCCGGCGAAGGCAGCGGCGGAGGAGTCGACGAGGAGAAAGAGAG  300

Query  341  TCGGTCTGGAGTGAAGGCGGCTAGCGCGGCGTGCGAGGAGAAGGTTCTTGTCATAATGGC  400
            |||  |||||||||||||||| || ||||||| |||||||||| ||||||||||||||||
Sbjct  301  TCGAACTGGAGTGAAGGCGGCGAGTGCGGCGTACGAGGAGAAGATTCTTGTCATAATGGC  360

Query  401  CGGAGATGACTTGCCGAGGTTTCTGGCCACGCCGGCGGCGAACAAATGCATGTGCGGTCA  460
            ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  361  CGGAGATGATTTGCCGAGGTTTCTGGCCACGCCGGCGGCGAACAACTGCATGTGCGGTCA  420

Query  461  CGAGGGTAGAATGGTAATTT-TCAAGGAGGATGGTATTGGTGCTGGAGAGGAGAAAATGG  519
            |||||||| ||||||||||| | |||||||||||||||||||||||||| ||||||||||
Sbjct  421  CGAGGGTAAAATGGTAATTTCT-AAGGAGGATGGTATTGGTGCTGGAGAAGAGAAAATGG  479

Query  520  GAGACAGAGAGAAAGCCAAAGAAAATGAAGAAACAACGAGTCAGTGA  566
            |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  480  GAGACAGAGAGAAAGCCAAAGAAAATGAAGAAACAACGAGTCAGTGA  526



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29240277339


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5