BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G24765.1 Length=882 Score E Sequences producing significant alignments: (Bits) Value Ahg481337 jgi|Araly1|481337|fgenesh2_kg.4__397__AT2G24765.1 1363 0.0 Ahg944806 jgi|Araly1|944806|scaffold_701035.1 767 0.0 > Ahg481337 jgi|Araly1|481337|fgenesh2_kg.4__397__AT2G24765.1 Length=871 Score = 1363 bits (738), Expect = 0.0 Identities = 832/874 (95%), Gaps = 20/874 (2%) Strand=Plus/Plus Query 2 AAGAAGAAGAAAAGATCTGAGAGGTGGTCGAATGATCCAAGAGAAGAAGAACAATCTCTC 61 |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| Sbjct 1 AAGAAGAAGAAAAGATCTGAGA-GAGGTCGAATGATCCAAGAGAAGAAGAACAATCTCTC 59 Query 62 TTAGATCG--T--T-TGATCTGATCCAATC------GAAGAAGAAG-ATGGGAATCTTAT 109 |||||||| | | ||||||||||||||| |||||||||| ||||||||||||| Sbjct 60 TTAGATCGTTTGATCTGATCTGATCCAATCGAAGAAGAAGAAGAAGTATGGGAATCTTAT 119 Query 110 TCACGCGGATGTTCTCTTCCGTCTTTGGTAACAAAGAAGCTCGAATCCTCGTCCTCGGTC 169 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 TCACGCGGATGTTCTCTTCCGTCTTTGGTAACAAAGAAGCTCGAATCCTCGTCCTCGGTC 179 Query 170 TCGACAATGCTGGAAAAACCACAATCCTCTATCGGCTTCAGATGGGGGAAGTTGTCTCTA 229 ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 180 TCGACAATGCTGGCAAAACCACAATCCTCTATCGGCTTCAGATGGGCGAAGTTGTCTCTA 239 Query 230 CGATTCCGACTATTGGATTTAACGTTGAGACTGTGCAGTACAACAATATCAAGTTTCAGG 289 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 240 CGATTCCGACTATTGGATTTAACGTTGAGACTGTGCAGTACAACAATATCAAGTTCCAGG 299 Query 290 TCTGGGATTTAGGTGGACAAACAAGCATCAGGCCATACTGGCGATGCTATTTCCCGAATA 349 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 300 TCTGGGATTTAGGTGGACAAACGAGCATCAGGCCATACTGGCGATGCTATTTCCCGAATA 359 Query 350 CACAAGCAGTGATCTATGTTGTTGACTCGAGTGATACAGATAGAATCGGGGTGGCGAAAG 409 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 360 CACAAGCAGTGATCTATGTTGTTGACTCGAGTGACACAGATAGAATCGGGGTGGCGAAAG 419 Query 410 AGGAGTTTCATGCAATTTTAGAGGAAGATGAATTGAAAGGTGCGGTGGTTCTGATATTTG 469 ||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||| Sbjct 420 AGGAGTTTCATGCAATTCTGGAGGAAGAGGAATTGAAAGGTGCGGTGGTTCTGATATTTG 479 Query 470 CAAACAAGCAGGATCTTCCCGGTGCACTCGATGATGCGGCTGTTACAGAAGCCTTGGAGT 529 ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| Sbjct 480 CAAACAAGCAGGATCTTCCTGGTGCACTCGATGATGCCGCTGTTACAGAAGCCTTGGAGT 539 Query 530 TGCATAAGATAAAGAGTCGTCAATGGGCAATCTTCAAAACTTGTGCTGTGAAAGGCGAGG 589 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 TGCATAAGATAAAGAGTCGTCAATGGGCAATCTTCAAAACTTGTGCTGTGAAAGGCGAGG 599 Query 590 GACTTTTCGAGGGATTGGACTGGTTGAGTAATACATTGAAGTCGGGAAGTGGCTAAAATC 649 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 GACTTTTCGAGGGATTGGACTGGTTGAGTAATACATTGAAGTCGGGAAGTGGCTAAAATT 659 Query 650 ATCGTCATACACCAATCTGTCACATTTCTCAAGAGTGTAACTTTGATCATTTTTACTTAT 709 ||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||| Sbjct 660 ATCTTCATACACCAATCTGTCACATCCCTCAAGAGTGTATCTTTGATCATTTTTACTTAT 719 Query 710 TGGTTTGTTTAGTATCttttttttATCTTAGTTCTTCATCTTAAAGAGTTAATATCAATG 769 |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 720 TGGTTTGTTTAGTATCATTTTT--ATCTTAGTTCTTCATCTTAAAGAGTTAATATCAATG 777 Query 770 ACATGTTCACTTAATATT--CTCTTTT-T--GTTGTTTTGTTTCATTCTGAAAGAAAAAA 824 || ||||||||||||||| ||||||| | |||||||||||||||||||||| |||||| Sbjct 778 ACGTGTTCACTTAATATTGTCTCTTTTCTTTGTTGTTTTGTTTCATTCTGAAAAAAAAAA 837 Query 825 CCCAACACAGATTTTTGATTGAGACCCATAAGGG 858 | |||||| |||||||||||||||||| |||||| Sbjct 838 CTCAACACGGATTTTTGATTGAGACCCGTAAGGG 871 > Ahg944806 jgi|Araly1|944806|scaffold_701035.1 Length=589 Score = 767 bits (415), Expect = 0.0 Identities = 522/574 (91%), Gaps = 5/574 (1%) Strand=Plus/Plus Query 91 AAGAAGATGGGAATCTTATTCACGCGGATGTTCTCTTCCGTCTTTGGTAACAAAGAAGCT 150 ||||||||||||||| | |||||| | ||||||||||| | ||||| |||||||||||| Sbjct 15 AAGAAGATGGGAATCGTGTTCACGAAGTTGTTCTCTTCCTTGTTTGGGAACAAAGAAGCT 74 Query 151 CGAATCCTCGTCCTCGGTCTCGACAATGCTGGAAAAACCACAATCCTCTATCGGCTTCAG 210 || |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 75 CGTATCCTCGTCCTCGGCCTCGACAATGCCGGAAAAACCACAATCCTCTATCGGCTTCAA 134 Query 211 ATGGGGGAAGTTGTCTCTACGATTCCGACTATTGGATTTAACGTTGAGACTGTGCAGTAC 270 ||||| || || ||||| |||||||||||||||||||||||||| ||||| ||||||||| Sbjct 135 ATGGGAGAGGTAGTCTCCACGATTCCGACTATTGGATTTAACGTCGAGACAGTGCAGTAC 194 Query 271 AACAATATCAAGTTTCAGGTCTGGGATTTAGGTGGACAAACAAGCATCAGGCCATACTGG 330 ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||| Sbjct 195 AACAATATCAAGTTTCAGGTCTGGGATTTAGGTGGACAAACGAGCATTAGGCCATATTGG 254 Query 331 CGATGCTATTTCCCGAATACACAAGCAGTGATCTATGTTGTTGACTCGAGTGATACAGAT 390 ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 255 AGATGCTATTTCCCAAATACACAAGCAGTGATCTATGTTGTTGATTCGAGTGATACAGAT 314 Query 391 AGAATCGGGGTGGCGAAAGAGGAGTTTCATGCAATTTTAGAGGAAGATGAATTGAAAGGT 450 ||||| || ||||||||||| ||||| ||||||||||| |||||||| |||||||||||| Sbjct 315 AGAATTGGAGTGGCGAAAGAAGAGTTCCATGCAATTTTGGAGGAAGAGGAATTGAAAGGT 374 Query 451 GCGGTGGTTCTGATATTTGCAAACAAGCAGGATCTTCCCGGTGCACTCGATGATGCGGCT 510 || ||||||| ||||||||||||||||||||||| || ||||||||||| || || ||| Sbjct 375 GCAATGGTTCTAATATTTGCAAACAAGCAGGATCTACCAGGTGCACTCGACGACGCAGCT 434 Query 511 GTTACAGAAGCCTTGGAGTTGCATAAGATAAAGAGTCGTCAATGGGCAATCTTCAAAACT 570 || ||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 435 GTGACAGAGGCCTTGGAGTTGCACAAGATAAAGAGCCGTCAATGGGCAATCTTCAAAACT 494 Query 571 TGTGCTGTGAAAGGCGAGGGACTTTTCGAGGGATTGGACTGGTTGAGTAATACATTGAAG 630 |||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||| Sbjct 495 TGTGCTGTGAAAGGCGAGGGACTTTTCGAGGGCTTAGACTGGTTGAGTAATACCTTGAAA 554 Query 631 TC-GGGAAGTGGCTAAAATCATCGTCATACACCA 663 || |||| |||||||| |||||| || | ||||| Sbjct 555 TCAGGGA-GTGGCTAACATCATC-TC-T-CACCA 584 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32671339869 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5