BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24765.1
Length=882
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481337 jgi|Araly1|481337|fgenesh2_kg.4__397__AT2G24765.1 1363 0.0
Ahg944806 jgi|Araly1|944806|scaffold_701035.1 767 0.0
> Ahg481337 jgi|Araly1|481337|fgenesh2_kg.4__397__AT2G24765.1
Length=871
Score = 1363 bits (738), Expect = 0.0
Identities = 832/874 (95%), Gaps = 20/874 (2%)
Strand=Plus/Plus
Query 2 AAGAAGAAGAAAAGATCTGAGAGGTGGTCGAATGATCCAAGAGAAGAAGAACAATCTCTC 61
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1 AAGAAGAAGAAAAGATCTGAGA-GAGGTCGAATGATCCAAGAGAAGAAGAACAATCTCTC 59
Query 62 TTAGATCG--T--T-TGATCTGATCCAATC------GAAGAAGAAG-ATGGGAATCTTAT 109
|||||||| | | ||||||||||||||| |||||||||| |||||||||||||
Sbjct 60 TTAGATCGTTTGATCTGATCTGATCCAATCGAAGAAGAAGAAGAAGTATGGGAATCTTAT 119
Query 110 TCACGCGGATGTTCTCTTCCGTCTTTGGTAACAAAGAAGCTCGAATCCTCGTCCTCGGTC 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TCACGCGGATGTTCTCTTCCGTCTTTGGTAACAAAGAAGCTCGAATCCTCGTCCTCGGTC 179
Query 170 TCGACAATGCTGGAAAAACCACAATCCTCTATCGGCTTCAGATGGGGGAAGTTGTCTCTA 229
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 180 TCGACAATGCTGGCAAAACCACAATCCTCTATCGGCTTCAGATGGGCGAAGTTGTCTCTA 239
Query 230 CGATTCCGACTATTGGATTTAACGTTGAGACTGTGCAGTACAACAATATCAAGTTTCAGG 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 240 CGATTCCGACTATTGGATTTAACGTTGAGACTGTGCAGTACAACAATATCAAGTTCCAGG 299
Query 290 TCTGGGATTTAGGTGGACAAACAAGCATCAGGCCATACTGGCGATGCTATTTCCCGAATA 349
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 300 TCTGGGATTTAGGTGGACAAACGAGCATCAGGCCATACTGGCGATGCTATTTCCCGAATA 359
Query 350 CACAAGCAGTGATCTATGTTGTTGACTCGAGTGATACAGATAGAATCGGGGTGGCGAAAG 409
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 360 CACAAGCAGTGATCTATGTTGTTGACTCGAGTGACACAGATAGAATCGGGGTGGCGAAAG 419
Query 410 AGGAGTTTCATGCAATTTTAGAGGAAGATGAATTGAAAGGTGCGGTGGTTCTGATATTTG 469
||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||
Sbjct 420 AGGAGTTTCATGCAATTCTGGAGGAAGAGGAATTGAAAGGTGCGGTGGTTCTGATATTTG 479
Query 470 CAAACAAGCAGGATCTTCCCGGTGCACTCGATGATGCGGCTGTTACAGAAGCCTTGGAGT 529
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 480 CAAACAAGCAGGATCTTCCTGGTGCACTCGATGATGCCGCTGTTACAGAAGCCTTGGAGT 539
Query 530 TGCATAAGATAAAGAGTCGTCAATGGGCAATCTTCAAAACTTGTGCTGTGAAAGGCGAGG 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TGCATAAGATAAAGAGTCGTCAATGGGCAATCTTCAAAACTTGTGCTGTGAAAGGCGAGG 599
Query 590 GACTTTTCGAGGGATTGGACTGGTTGAGTAATACATTGAAGTCGGGAAGTGGCTAAAATC 649
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GACTTTTCGAGGGATTGGACTGGTTGAGTAATACATTGAAGTCGGGAAGTGGCTAAAATT 659
Query 650 ATCGTCATACACCAATCTGTCACATTTCTCAAGAGTGTAACTTTGATCATTTTTACTTAT 709
||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 660 ATCTTCATACACCAATCTGTCACATCCCTCAAGAGTGTATCTTTGATCATTTTTACTTAT 719
Query 710 TGGTTTGTTTAGTATCttttttttATCTTAGTTCTTCATCTTAAAGAGTTAATATCAATG 769
|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 720 TGGTTTGTTTAGTATCATTTTT--ATCTTAGTTCTTCATCTTAAAGAGTTAATATCAATG 777
Query 770 ACATGTTCACTTAATATT--CTCTTTT-T--GTTGTTTTGTTTCATTCTGAAAGAAAAAA 824
|| ||||||||||||||| ||||||| | |||||||||||||||||||||| ||||||
Sbjct 778 ACGTGTTCACTTAATATTGTCTCTTTTCTTTGTTGTTTTGTTTCATTCTGAAAAAAAAAA 837
Query 825 CCCAACACAGATTTTTGATTGAGACCCATAAGGG 858
| |||||| |||||||||||||||||| ||||||
Sbjct 838 CTCAACACGGATTTTTGATTGAGACCCGTAAGGG 871
> Ahg944806 jgi|Araly1|944806|scaffold_701035.1
Length=589
Score = 767 bits (415), Expect = 0.0
Identities = 522/574 (91%), Gaps = 5/574 (1%)
Strand=Plus/Plus
Query 91 AAGAAGATGGGAATCTTATTCACGCGGATGTTCTCTTCCGTCTTTGGTAACAAAGAAGCT 150
||||||||||||||| | |||||| | ||||||||||| | ||||| ||||||||||||
Sbjct 15 AAGAAGATGGGAATCGTGTTCACGAAGTTGTTCTCTTCCTTGTTTGGGAACAAAGAAGCT 74
Query 151 CGAATCCTCGTCCTCGGTCTCGACAATGCTGGAAAAACCACAATCCTCTATCGGCTTCAG 210
|| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 75 CGTATCCTCGTCCTCGGCCTCGACAATGCCGGAAAAACCACAATCCTCTATCGGCTTCAA 134
Query 211 ATGGGGGAAGTTGTCTCTACGATTCCGACTATTGGATTTAACGTTGAGACTGTGCAGTAC 270
||||| || || ||||| |||||||||||||||||||||||||| ||||| |||||||||
Sbjct 135 ATGGGAGAGGTAGTCTCCACGATTCCGACTATTGGATTTAACGTCGAGACAGTGCAGTAC 194
Query 271 AACAATATCAAGTTTCAGGTCTGGGATTTAGGTGGACAAACAAGCATCAGGCCATACTGG 330
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||
Sbjct 195 AACAATATCAAGTTTCAGGTCTGGGATTTAGGTGGACAAACGAGCATTAGGCCATATTGG 254
Query 331 CGATGCTATTTCCCGAATACACAAGCAGTGATCTATGTTGTTGACTCGAGTGATACAGAT 390
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 255 AGATGCTATTTCCCAAATACACAAGCAGTGATCTATGTTGTTGATTCGAGTGATACAGAT 314
Query 391 AGAATCGGGGTGGCGAAAGAGGAGTTTCATGCAATTTTAGAGGAAGATGAATTGAAAGGT 450
||||| || ||||||||||| ||||| ||||||||||| |||||||| ||||||||||||
Sbjct 315 AGAATTGGAGTGGCGAAAGAAGAGTTCCATGCAATTTTGGAGGAAGAGGAATTGAAAGGT 374
Query 451 GCGGTGGTTCTGATATTTGCAAACAAGCAGGATCTTCCCGGTGCACTCGATGATGCGGCT 510
|| ||||||| ||||||||||||||||||||||| || ||||||||||| || || |||
Sbjct 375 GCAATGGTTCTAATATTTGCAAACAAGCAGGATCTACCAGGTGCACTCGACGACGCAGCT 434
Query 511 GTTACAGAAGCCTTGGAGTTGCATAAGATAAAGAGTCGTCAATGGGCAATCTTCAAAACT 570
|| ||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 435 GTGACAGAGGCCTTGGAGTTGCACAAGATAAAGAGCCGTCAATGGGCAATCTTCAAAACT 494
Query 571 TGTGCTGTGAAAGGCGAGGGACTTTTCGAGGGATTGGACTGGTTGAGTAATACATTGAAG 630
|||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||
Sbjct 495 TGTGCTGTGAAAGGCGAGGGACTTTTCGAGGGCTTAGACTGGTTGAGTAATACCTTGAAA 554
Query 631 TC-GGGAAGTGGCTAAAATCATCGTCATACACCA 663
|| |||| |||||||| |||||| || | |||||
Sbjct 555 TCAGGGA-GTGGCTAACATCATC-TC-T-CACCA 584
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32671339869
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5