BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G24790.1 Length=1145 Score E Sequences producing significant alignments: (Bits) Value Ahg481339 jgi|Araly1|481339|fgenesh2_kg.4__399__AT2G24790.1 1456 0.0 Ahg489353 jgi|Araly1|489353|fgenesh2_kg.6__2487__AT5G24930.1 207 1e-52 > Ahg481339 jgi|Araly1|481339|fgenesh2_kg.4__399__AT2G24790.1 Length=1105 Score = 1456 bits (788), Expect = 0.0 Identities = 1021/1129 (90%), Gaps = 34/1129 (3%) Strand=Plus/Plus Query 27 aaaaaaaaCAGTAGAGAGAGATATAGAGAGCATCAATGGCGTCGTCGTCAAGACTTTGCG 86 |||||||||||| ||||||| |||||| | ||||||| |||||| |||||||||| Sbjct 1 AAAAAAAACAGT----AGAGATAGAGAGAGAAACAATGGCATCGTCG---AGACTTTGCG 53 Query 87 ATTCGTGCAAATCGACGGCAGCAACTCTATTCTGCCGCGCAGACGCCGCGTTTCTCTGCG 146 ||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||| Sbjct 54 ATTCGTGCAAATCGACGACAGCCACTCTATTCTGCCGCGCAGACGCCGCATTTCTCTGCG 113 Query 147 GCGACTGCGACGGTAAGATCCACACAGCTAACAAACTCGCATCACGTCACGAACGAGTTT 206 ||| |||||||||||| |||||||||||| |||||||||| ||||||||||| ||||||| Sbjct 114 GCGTCTGCGACGGTAAAATCCACACAGCTGACAAACTCGCTTCACGTCACGAGCGAGTTT 173 Query 207 GGCTATGTGAAGTATGCGAACAAGCACCAGCACACGTCACGTGCAAAGCTGACGCCGCTG 266 ||||||||||||| || |||||||||||||||||||||||||||||||||||||| || | Sbjct 174 GGCTATGTGAAGTCTGTGAACAAGCACCAGCACACGTCACGTGCAAAGCTGACGCAGCCG 233 Query 267 CG-TTATGCGTCACGTGCGACCGTGATATCCACTCAGCTAATCCACTCTCTCGCCGCCAC 325 || || ||||||||||| || ||||||||||||||||| |||| |||||| |||||||| Sbjct 234 CGCTT-TGCGTCACGTGTGATCGTGATATCCACTCAGCCAATCTGCTCTCTAGCCGCCAC 292 Query 326 GAGCGCGTACCAATCACTCCTTTCTACGACGCTGTAGGTCCAGCAAAATCCGCTTCCTCC 385 |||||||| ||||||||||||||||||||| || | |||||||||||||||||| ||| Sbjct 293 GAGCGCGTTCCAATCACTCCTTTCTACGACACT-T--CTCCAGCAAAATCCGCTTCTTCC 349 Query 386 TCCGTCAATTTCGTAGATGAAGATGGCGGTGACGTCACTGCTTCGTGGCTTTTAGC-TAA 444 ||||||| ||| ||||| |||||||| ||||||||| |||| |||||||||||| | ||| Sbjct 350 TCCGTCAGTTTTGTAGAAGAAGATGGTGGTGACGTCTCTGCGTCGTGGCTTTTA-CATAA 408 Query 445 AGAAGGAATCGAAATCACTAATTTGTTCTCCGATCTTGATTATCCGAAGATTGAGGTAAC 504 |||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||| || Sbjct 409 AGAAGGAATCGAAATCACAAATTTGTTTTCCGATCTTGATTATCCGAAGATGGAGGTTAC 468 Query 505 GTCGGAGGAGAATAGCTCCGGTAACGACGGAGTTGTTCCTGTGCAGAATAAGTTGTTTCT 564 ||||||| | |||||||||||||||||||||||||||||||| |||| ||| ||||||| Sbjct 469 GTCGGAGAATAATAGCTCCGGTAACGACGGAGTTGTTCCTGTACAGAGCAAGATGTTTCT 528 Query 565 TAACGAAGATTACTTCAATTTCGATCTCTCTGCTTCCAAAATTTC-TCAACAAGGATTCA 623 || |||||||||||||||||||||||||||||||||||| |||| |||| | ||||||| Sbjct 529 CAATGAAGATTACTTCAATTTCGATCTCTCTGCTTCCAAAGTTTCTTCAA-ACGGATTCA 587 Query 624 ATTTCATCAACCAAACTGTTTCGACGAGAACGATAGATGTACCGTTGGTGCCTGAAAGTG 683 |||||||||||||||| |||| ||||| |||| |||||| |||||||||| ||||||| Sbjct 588 ATTTCATCAACCAAACGGTTT---CGAGATCGATTGATGTAGCGTTGGTGCCGGAAAGTG 644 Query 684 GAGGAGTGACGGCGGAGATGACGAACACG--GA----GACGCCAGCTGTGCAGTTATCAC 737 ||||||| ||||||||||| || |||||| || |||||||||||||||||| |||| Sbjct 645 GAGGAGTTACGGCGGAGATAACAAACACGACGACGGTGACGCCAGCTGTGCAGTTGTCAC 704 Query 738 CGGCGGAGAGGGAAGCAAGGGTTTTGAGGTATAGAGAGAAGAGGAAGAATCGGAAATTTG 797 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 705 CGGCGGAGAGGGAAGCTAGGGTTTTGAGGTATAGAGAGAAGAGGAAGAATCGGAAATTTG 764 Query 798 AGAAGACGATTAGGTATGCGTCGCGTAAAGCTTACGCTGAGATGAGGCCGAGAATCAAAG 857 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 765 AGAAGACGATTAGGTATGCGTCGCGTAAAGCTTACGCTGAGATGAGACCGAGAATCAAAG 824 Query 858 GACGTTTTGCTAAGAGAACAGATTCGAGAGAGAATGATGGTGGAGACGTCGGAGTTTATG 917 |||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||| Sbjct 825 GACGTTTTGCTAAGAGAACAGAATCGAGAGAGAAGGATGGTGGAGACGTTGGAGTTTATG 884 Query 918 GCGGATTCGGTGTTGTTCCGAGTTTCTGATATTTTCCGGTGAAAGAAACATGGTAGTAGT 977 |||||||||| ||||||||||||||||||| ||||||||| ||||||| ||||||||| | Sbjct 885 GCGGATTCGGCGTTGTTCCGAGTTTCTGATCTTTTCCGGTTAAAGAAAGATGGTAGTA-T 943 Query 978 ATATCGGTTAATAGCAGATTAAGGATAATTAAAACTAAAATGTTTCCTGATTTAATCAGG 1037 |||||||||| |||||||||||||||||||||||||||| |||||||||||||||| Sbjct 944 ----CGGTTAATAGAAGATTAAGGATAATTAAAACTAAAATGTATCCTGATTTAATCAGG 999 Query 1038 GGCTAAGTTATTGTTAGAAGATTGTTGTTTTTT-GAATTAATTCTCACAATTGTATCCTA 1096 || |||||| | |||||||||||||||||||| ||||||||| |||||||||||| ||| Sbjct 1000 GGATAAGTT-TA-TTAGAAGATTGTTGTTTTTTTGAATTAATTTTCACAATTGTATGCTA 1057 Query 1097 AATTATATAGTTTACTTAATGTTGAACTAATAAATTTTGATTTACAATC 1145 |||||||||||| | ||||||||||||||||| |||||||||||||| Sbjct 1058 AATTATATAGTTAAAA-AATGTTGAACTAATAAAATTTGATTTACAATC 1105 > Ahg489353 jgi|Araly1|489353|fgenesh2_kg.6__2487__AT5G24930.1 Length=1445 Score = 207 bits (112), Expect = 1e-52 Identities = 233/290 (80%), Gaps = 14/290 (5%) Strand=Plus/Plus Query 72 CGTC-AAGACTTTGCGATTCGTGCAAATCGACGGCAGCAAC-TCTATTCTGCCG-CGCAG 128 |||| ||| || |||||||||||||||||| || | || | | ||| |||||| | ||| Sbjct 209 CGTCTAAG-CTCTGCGATTCGTGCAAATCGGCGACGGCGGCGT-TATACTGCCGAC-CAG 265 Query 129 ACGCCGCGTTTCTCTGCGGCGA-CTGCGACGGT-AAGA-TCCACACAGCTAACAAACTCG 185 |||| |||||||| ||| | |||||| | || | ||||| | || |||||||||| Sbjct 266 ACGCAGCGTTTCTATGC-TTAAGCTGCGA--TTCAAAAGTCCACGCGGCGAACAAACTCG 322 Query 186 CATCACGTCACGAACGAGTTTGGCTATGTGAAGTATGCGAACAAGCACCAGCACACGTCA 245 | ||||| |||| || || ||| | |||||||| ||||| |||||||| |||||||||| Sbjct 323 CGTCACGACACGCGCGCGTGTGGATGTGTGAAGTGTGCGAGCAAGCACCGGCACACGTCA 382 Query 246 CGTGCAAAGCTGACGCCGCTGCGTTATGCGTCACGTGCGACCGTGATATCCACTCAGCTA 305 |||||||||| ||||| || ||||||||||||||||||||||||||||| ||||| |||| Sbjct 383 CGTGCAAAGCAGACGCGGCCGCGTTATGCGTCACGTGCGACCGTGATATTCACTCGGCTA 442 Query 306 ATCCACTCTCTCGCCGCCACGAGCGCGTACCAATCACTCC-TTTCTACGA 354 |||| | ||||||| ||||| ||||| || | ||||| ||| ||||| Sbjct 443 ATCCGTTAGCTCGCCGTCACGAACGCGTTCCCGTTACTCCGTTT-TACGA 491 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42697667040 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5