BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24790.1
Length=1145
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481339 jgi|Araly1|481339|fgenesh2_kg.4__399__AT2G24790.1 1456 0.0
Ahg489353 jgi|Araly1|489353|fgenesh2_kg.6__2487__AT5G24930.1 207 1e-52
> Ahg481339 jgi|Araly1|481339|fgenesh2_kg.4__399__AT2G24790.1
Length=1105
Score = 1456 bits (788), Expect = 0.0
Identities = 1021/1129 (90%), Gaps = 34/1129 (3%)
Strand=Plus/Plus
Query 27 aaaaaaaaCAGTAGAGAGAGATATAGAGAGCATCAATGGCGTCGTCGTCAAGACTTTGCG 86
|||||||||||| ||||||| |||||| | ||||||| |||||| ||||||||||
Sbjct 1 AAAAAAAACAGT----AGAGATAGAGAGAGAAACAATGGCATCGTCG---AGACTTTGCG 53
Query 87 ATTCGTGCAAATCGACGGCAGCAACTCTATTCTGCCGCGCAGACGCCGCGTTTCTCTGCG 146
||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||
Sbjct 54 ATTCGTGCAAATCGACGACAGCCACTCTATTCTGCCGCGCAGACGCCGCATTTCTCTGCG 113
Query 147 GCGACTGCGACGGTAAGATCCACACAGCTAACAAACTCGCATCACGTCACGAACGAGTTT 206
||| |||||||||||| |||||||||||| |||||||||| ||||||||||| |||||||
Sbjct 114 GCGTCTGCGACGGTAAAATCCACACAGCTGACAAACTCGCTTCACGTCACGAGCGAGTTT 173
Query 207 GGCTATGTGAAGTATGCGAACAAGCACCAGCACACGTCACGTGCAAAGCTGACGCCGCTG 266
||||||||||||| || |||||||||||||||||||||||||||||||||||||| || |
Sbjct 174 GGCTATGTGAAGTCTGTGAACAAGCACCAGCACACGTCACGTGCAAAGCTGACGCAGCCG 233
Query 267 CG-TTATGCGTCACGTGCGACCGTGATATCCACTCAGCTAATCCACTCTCTCGCCGCCAC 325
|| || ||||||||||| || ||||||||||||||||| |||| |||||| ||||||||
Sbjct 234 CGCTT-TGCGTCACGTGTGATCGTGATATCCACTCAGCCAATCTGCTCTCTAGCCGCCAC 292
Query 326 GAGCGCGTACCAATCACTCCTTTCTACGACGCTGTAGGTCCAGCAAAATCCGCTTCCTCC 385
|||||||| ||||||||||||||||||||| || | |||||||||||||||||| |||
Sbjct 293 GAGCGCGTTCCAATCACTCCTTTCTACGACACT-T--CTCCAGCAAAATCCGCTTCTTCC 349
Query 386 TCCGTCAATTTCGTAGATGAAGATGGCGGTGACGTCACTGCTTCGTGGCTTTTAGC-TAA 444
||||||| ||| ||||| |||||||| ||||||||| |||| |||||||||||| | |||
Sbjct 350 TCCGTCAGTTTTGTAGAAGAAGATGGTGGTGACGTCTCTGCGTCGTGGCTTTTA-CATAA 408
Query 445 AGAAGGAATCGAAATCACTAATTTGTTCTCCGATCTTGATTATCCGAAGATTGAGGTAAC 504
|||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||| ||
Sbjct 409 AGAAGGAATCGAAATCACAAATTTGTTTTCCGATCTTGATTATCCGAAGATGGAGGTTAC 468
Query 505 GTCGGAGGAGAATAGCTCCGGTAACGACGGAGTTGTTCCTGTGCAGAATAAGTTGTTTCT 564
||||||| | |||||||||||||||||||||||||||||||| |||| ||| |||||||
Sbjct 469 GTCGGAGAATAATAGCTCCGGTAACGACGGAGTTGTTCCTGTACAGAGCAAGATGTTTCT 528
Query 565 TAACGAAGATTACTTCAATTTCGATCTCTCTGCTTCCAAAATTTC-TCAACAAGGATTCA 623
|| |||||||||||||||||||||||||||||||||||| |||| |||| | |||||||
Sbjct 529 CAATGAAGATTACTTCAATTTCGATCTCTCTGCTTCCAAAGTTTCTTCAA-ACGGATTCA 587
Query 624 ATTTCATCAACCAAACTGTTTCGACGAGAACGATAGATGTACCGTTGGTGCCTGAAAGTG 683
|||||||||||||||| |||| ||||| |||| |||||| |||||||||| |||||||
Sbjct 588 ATTTCATCAACCAAACGGTTT---CGAGATCGATTGATGTAGCGTTGGTGCCGGAAAGTG 644
Query 684 GAGGAGTGACGGCGGAGATGACGAACACG--GA----GACGCCAGCTGTGCAGTTATCAC 737
||||||| ||||||||||| || |||||| || |||||||||||||||||| ||||
Sbjct 645 GAGGAGTTACGGCGGAGATAACAAACACGACGACGGTGACGCCAGCTGTGCAGTTGTCAC 704
Query 738 CGGCGGAGAGGGAAGCAAGGGTTTTGAGGTATAGAGAGAAGAGGAAGAATCGGAAATTTG 797
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 CGGCGGAGAGGGAAGCTAGGGTTTTGAGGTATAGAGAGAAGAGGAAGAATCGGAAATTTG 764
Query 798 AGAAGACGATTAGGTATGCGTCGCGTAAAGCTTACGCTGAGATGAGGCCGAGAATCAAAG 857
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 765 AGAAGACGATTAGGTATGCGTCGCGTAAAGCTTACGCTGAGATGAGACCGAGAATCAAAG 824
Query 858 GACGTTTTGCTAAGAGAACAGATTCGAGAGAGAATGATGGTGGAGACGTCGGAGTTTATG 917
|||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||
Sbjct 825 GACGTTTTGCTAAGAGAACAGAATCGAGAGAGAAGGATGGTGGAGACGTTGGAGTTTATG 884
Query 918 GCGGATTCGGTGTTGTTCCGAGTTTCTGATATTTTCCGGTGAAAGAAACATGGTAGTAGT 977
|||||||||| ||||||||||||||||||| ||||||||| ||||||| ||||||||| |
Sbjct 885 GCGGATTCGGCGTTGTTCCGAGTTTCTGATCTTTTCCGGTTAAAGAAAGATGGTAGTA-T 943
Query 978 ATATCGGTTAATAGCAGATTAAGGATAATTAAAACTAAAATGTTTCCTGATTTAATCAGG 1037
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 944 ----CGGTTAATAGAAGATTAAGGATAATTAAAACTAAAATGTATCCTGATTTAATCAGG 999
Query 1038 GGCTAAGTTATTGTTAGAAGATTGTTGTTTTTT-GAATTAATTCTCACAATTGTATCCTA 1096
|| |||||| | |||||||||||||||||||| ||||||||| |||||||||||| |||
Sbjct 1000 GGATAAGTT-TA-TTAGAAGATTGTTGTTTTTTTGAATTAATTTTCACAATTGTATGCTA 1057
Query 1097 AATTATATAGTTTACTTAATGTTGAACTAATAAATTTTGATTTACAATC 1145
|||||||||||| | ||||||||||||||||| ||||||||||||||
Sbjct 1058 AATTATATAGTTAAAA-AATGTTGAACTAATAAAATTTGATTTACAATC 1105
> Ahg489353 jgi|Araly1|489353|fgenesh2_kg.6__2487__AT5G24930.1
Length=1445
Score = 207 bits (112), Expect = 1e-52
Identities = 233/290 (80%), Gaps = 14/290 (5%)
Strand=Plus/Plus
Query 72 CGTC-AAGACTTTGCGATTCGTGCAAATCGACGGCAGCAAC-TCTATTCTGCCG-CGCAG 128
|||| ||| || |||||||||||||||||| || | || | | ||| |||||| | |||
Sbjct 209 CGTCTAAG-CTCTGCGATTCGTGCAAATCGGCGACGGCGGCGT-TATACTGCCGAC-CAG 265
Query 129 ACGCCGCGTTTCTCTGCGGCGA-CTGCGACGGT-AAGA-TCCACACAGCTAACAAACTCG 185
|||| |||||||| ||| | |||||| | || | ||||| | || ||||||||||
Sbjct 266 ACGCAGCGTTTCTATGC-TTAAGCTGCGA--TTCAAAAGTCCACGCGGCGAACAAACTCG 322
Query 186 CATCACGTCACGAACGAGTTTGGCTATGTGAAGTATGCGAACAAGCACCAGCACACGTCA 245
| ||||| |||| || || ||| | |||||||| ||||| |||||||| ||||||||||
Sbjct 323 CGTCACGACACGCGCGCGTGTGGATGTGTGAAGTGTGCGAGCAAGCACCGGCACACGTCA 382
Query 246 CGTGCAAAGCTGACGCCGCTGCGTTATGCGTCACGTGCGACCGTGATATCCACTCAGCTA 305
|||||||||| ||||| || ||||||||||||||||||||||||||||| ||||| ||||
Sbjct 383 CGTGCAAAGCAGACGCGGCCGCGTTATGCGTCACGTGCGACCGTGATATTCACTCGGCTA 442
Query 306 ATCCACTCTCTCGCCGCCACGAGCGCGTACCAATCACTCC-TTTCTACGA 354
|||| | ||||||| ||||| ||||| || | ||||| ||| |||||
Sbjct 443 ATCCGTTAGCTCGCCGTCACGAACGCGTTCCCGTTACTCCGTTT-TACGA 491
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42697667040
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5