BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24800.1
Length=990
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481340 jgi|Araly1|481340|fgenesh2_kg.4__400__AT2G24800.1 1535 0.0
> Ahg481340 jgi|Araly1|481340|fgenesh2_kg.4__400__AT2G24800.1
Length=990
Score = 1535 bits (831), Expect = 0.0
Identities = 937/990 (95%), Gaps = 0/990 (0%)
Strand=Plus/Plus
Query 1 ATGGCGTTGCAGtttttttCATGCAAACCAAAATATACAttcctctcctctcttcttcta 60
|||||||||||||||| |||||||| |||||||| || ||| |||||||||||||||||
Sbjct 1 ATGGCGTTGCAGTTTTCTTCATGCAGACCAAAATCCACCTTCTTCTCCTCTCTTCTTCTA 60
Query 61 cttttgcttctttcttcttcagtagctgagctctctttcaacttctACGCCGGTTCTTGT 120
||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTTCTGCTTCTTTCTCCCTCAGTAGCTGAGCTCTCTTTCAACTTCTACGCCGGTTCTTGT 120
Query 121 CCTGGAGCTGAGTTAATCGTCAGAAACACCGTTAGATCTGCTTCTTCCTCTGATCCATCA 180
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 CCCGGAGCTGAGTTAATCGTCAGGAACACCGTTAGATCTGCTTCTTCCTCTGATCCATCA 180
Query 181 GTCCTTGGGAAGCTCCTACGTCTCATCTTCCATGACTGCTTCGTCCAGGGTTGTGATGGC 240
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 181 GTCCTTGGGAAGCTCCTACGTCTCATCTTCCATGATTGCTTCGTCAAGGGTTGTGATGGC 240
Query 241 TCAGTGTTGATTCGAGGAAACGGTACAGAGCGAAGCGACCCTGGGAATGCGTCTCTAGGA 300
|| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 241 TCGGTGTTGATTCGAGGGAACGGTACAGAGCGAAGCGACCCTGGGAATGCATCTCTAGGA 300
Query 301 GGATTCGCTGTGATAGAAAGCGTCAAAAATATCCTCGAAATCTTTTGTCCCGGCACAGTC 360
|||||| |||| ||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 301 GGATTCACTGTTATAGAAAGCATCAAAAATGTCCTCGAAATCTTTTGTCCCGGCACAGTG 360
Query 361 TCTTGTGCTGATATACTTGTTCTTGCCGCAAGAGATGCAGTAGAAGCTCTCGGAGGACCG 420
||||| |||||||| || |||||||| || |||||||||||||||||||| |||||||||
Sbjct 361 TCTTGCGCTGATATCCTCGTTCTTGCTGCTAGAGATGCAGTAGAAGCTCTAGGAGGACCG 420
Query 421 GTAGTTCCGATACCGACAGGGAGGAGAGACGGGAGAGTCTCAATGGCAGCAAATGTCAGA 480
|||||||| ||||||||||| || |||||||||| |||||||||||||| ||||||||||
Sbjct 421 GTAGTTCCAATACCGACAGGAAGAAGAGACGGGACAGTCTCAATGGCAGAAAATGTCAGA 480
Query 481 CCAAACATCATAGATACCGATTTCACAGTTGATAAGATGATCAATATCTTTTCCTCTAAA 540
||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 481 CCAAACATCATCGATACTGACTTCACAGTTGATAAGATGATCAATATCTTTTCCTCTAAA 540
Query 541 GGCTTATCTGTTCATGATCTAGTTGTCCTCTCAGGAGCGCACACTATTGGAGCTGCGCAT 600
|||||||||||||| || ||||| |||||||| ||||| |||||||||||||||||||||
Sbjct 541 GGCTTATCTGTTCAAGACCTAGTGGTCCTCTCTGGAGCACACACTATTGGAGCTGCGCAT 600
Query 601 TGTAACACGTTCAACAGCAGGTTTAAGCTTGATCCAAAAGGCAACTTAGAACTAATAGAC 660
|| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 601 TGCAACACATTCAACAGCAGGTTTAAGCTTGATCCAAAAGGCAACTTAGAGCTAATAGAC 660
Query 661 GCGTCTCTCGATAACTCCTATGCGCAAACACTTGTAAACAAGTGTTCATCGTCACTAGAT 720
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 661 GCGTCTCTCGATAACTCCTATGCGCAAACACTTGTAAACAAGTGTTCATCGTCATTAGAT 720
Query 721 CCAACGACCACGGTGGTTGATAACGATCCAGAGACATCGTCGACGTTCGATAATCAGTAC 780
|||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 721 CCAACGACCACGGTCGTTGACAACGATCCAGAGACATCTTCGACGTTCGATAATCAGTAC 780
Query 781 TACAAGAATCTGTTGGCTCACAAGGGTTTGTTTCAAACGGATTCAGCTCTCATGGAAGAT 840
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 781 TACAAGAATCTGTTGGCGCACAAGGGTTTGTTTCAGACGGATTCAGCTCTCATGGAAGAT 840
Query 841 GATCGGACGAGGAAGATTGTTGAGATTCTTGCGAATGATCAGGAGAGTTTTTTCGATAGA 900
||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 841 GATCGAACGAGGAAGATTGTGGAGATTCTTGCGAATGATCAGGAGAGTTTCTTCGATAGA 900
Query 901 TGGACTGAGTCTTTTTTGAAGATGAGTTTGATGGGAGTGAGAGTTGGTGAAGAAGGTGAG 960
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 901 TGGACTGAGTCTTTTTTGAAGATGAGTTTGATGGGTGTGAGAGTTGGTGAAGAAGGTGAG 960
Query 961 ATTAGACGTTCTTGTTCTGCTGTTAATTAA 990
||||||||||||||||||||||||||||||
Sbjct 961 ATTAGACGTTCTTGTTCTGCTGTTAATTAA 990
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36788614905
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5