BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24820.1
Length=1788
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932590 jgi|Araly1|932590|scaffold_400578.1 2647 0.0
Ahg481343 jgi|Araly1|481343|fgenesh2_kg.4__403__AT2G24830.1 132 1e-29
> Ahg932590 jgi|Araly1|932590|scaffold_400578.1
Length=1660
Score = 2647 bits (1433), Expect = 0.0
Identities = 1582/1654 (96%), Gaps = 10/1654 (1%)
Strand=Plus/Plus
Query 49 AAGAATCCGCCATGGCTGTTCCATTTCTAAGCTCTTCTCTACAACTCACACCCACTTCTC 108
|||| ||| ||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 10 AAGACTCCTCCATGGCTGTTCCATTTCTAAGCTCTTCTCTTCTACTCACACCCACTTCTC 69
Query 109 CGATTCTCTTCACTAAAGTAACACCAACACCAATAATCCACAACCACAGATC-A-A-CAT 165
||||||||||||||||| ||||| | ||||||||||||||||||| ||||| | | |||
Sbjct 70 CGATTCTCTTCACTAAACTAACA-C--CACCAATAATCCACAACCAGAGATCAACACCAT 126
Query 166 GCACTATACCCACAAAGCCTCGTCTACGTCTCCTCCGCCGCTCCGCCGTCGCTGGAACCG 225
||||| |||||||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct 127 GCACTGTACCCACAAAACCCCGTCTACGTCTCCTCCGCCGTTCCGCCGTCGCTGGAACCG 186
Query 226 CCGTAT-CTGATCAAACAGAAGGAGGTGGAGATGTTCTTTTAAACCCTGAAGAAGAGAAA 284
|||| | ||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 187 CCGT-TGCTGATCAAACAGAAGGAGGAGGAGAGGTTCTTTTAAACCCTGAAGAAGAGAAA 245
Query 285 CGTGTTGAGGTGGCGGATTATGATTGGACAGAGGAATGGTATCCATTGTACTTAACTAAA 344
||||||||||| || |||||||||||||||||||| ||||| ||||||||| | ||||||
Sbjct 246 CGTGTTGAGGTAGCAGATTATGATTGGACAGAGGAGTGGTACCCATTGTACCTCACTAAA 305
Query 345 AACGTCCCTGAAGATGCGCCTCTTGGCCTCACCGTCTACGATCGTCAAATTGTTTTGTAT 404
||||||||||| |||||||| ||||| ||||||||||||||||||||||| |||||||||
Sbjct 306 AACGTCCCTGACGATGCGCCGCTTGGTCTCACCGTCTACGATCGTCAAATAGTTTTGTAT 365
Query 405 AAAGACGGTGAAGGAACACTTCGTTGTTACGAAGATCGGTGTCCTCATCGGTTGGCTAAG 464
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 366 AAAGACGGTGAAGGAACACTACGTTGTTACGAAGATCGGTGTCCTCATCGTTTGGCTAAG 425
Query 465 TTGTCTGAAGGACAATTGATTGATGGGAGATTGGAATGTTTGTATCATGGTTGGCAATTT 524
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 426 TTGTCTGAAGGACAATTGATTGATGGGAGATTGGAATGTTTGTACCATGGTTGGCAATTT 485
Query 525 GAAGGAGAGGGCAAATGTGTCAAGATTCCTCAGCTTCCTGCAAGTGCTAAGATTCCAAAG 584
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 486 GAAGGAGAGGGTAAATGTGTCAAGATTCCTCAGCTTCCTGCGAGTGCTAAGATTCCAAAG 545
Query 585 GCTGCTTGTGTGAAGACGTATGAGGTGAAGGATTCACAAGGAGTTGTGTGGGTGTGGATG 644
|| |||||||||||||| ||||||||||| |||||||| |||||||| ||||||||||||
Sbjct 546 GCGGCTTGTGTGAAGACATATGAGGTGAAAGATTCACAGGGAGTTGTATGGGTGTGGATG 605
Query 645 TCAACAAAGACACCTCCAAACCCTGAGAAGCTTCCTTGGTTTGAGAATTTCGCTAGACCC 704
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 606 TCAACAAAGACACCTCCAAACCCTGAAAAGCTTCCTTGGTTTGAGAATTTCGCTAGACCC 665
Query 705 GGTTTTTTCGACATTTCGACTACTCATGAGCTTCCTTATGACCATTCCATTCTT-TTAGA 763
||||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||
Sbjct 666 GGTTTTTTCGACATTTCGACTACTCATGAGCTTCCTTATGATCATTCCATTCTTCTT-GA 724
Query 764 GAATCTGATGGATCCTGCTCATGTTCCTATCTCTCATGATAGAACGGATTTCACTGCTAA 823
|||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||
Sbjct 725 GAATCTGATGGATCCTGCTCATGTTCCTATTTCTCATGATAGAACTGACTTCACTGCTAA 784
Query 824 AAGAGAAGATGCTCAGCCTTTGGTTTTCGAGGTCACAGAGCGAAGTAATCGGGGTTTCGC 883
||||||||||||||||||| ||||||| ||||| |||||| |||||||||||||||||||
Sbjct 785 AAGAGAAGATGCTCAGCCTCTGGTTTTTGAGGTTACAGAGAGAAGTAATCGGGGTTTCGC 844
Query 884 AGGGACTTGGGGCCGAGAGAAAGAAGGTGGGAAAGGGAGTAATTTACTTCGGTTTGATGC 943
|||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 845 AGGGACTTGGGGTCGAGAGAAAGACGGAGGGAAAGGGAGTAATTTACTTCGGTTTGATGC 904
Query 944 TCCTTGTGTTCTGCAGAACAATCGAGAGTTCGAGGGGAAGGATGGAGTGAAGAACTATTT 1003
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 905 TCCTTGTGTTCTGCAGAATAATCGAGAGTTTGAGGGGAAGGATGGAGTGAAGAACTATTT 964
Query 1004 TTCAGGGCTGTTTCTTTGTAGACCTACAGGGCAAGGGAAGTCTATGCTTATTGTTAGGTT 1063
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 965 TTCAGGGCTGTTTCTTTGTAGACCTACAGGGCAAGGGAAGTCTATGCTTATTGTTAGGTT 1024
Query 1064 TGGGGTCACAAAAAGATCGCCTTTGGTTTCGGTGTTACCTCAATGGTTCTGGCATCAGAA 1123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1025 TGGGGTCACAAAAAGATCGCCTTTGGTTTCGGTGTTACCTCAATGGTTCTGGCATCAGAA 1084
Query 1124 TGCCTGCAAGGTTTTTGAACAAGACATGGGGTTTCTATCGTCTCAAAATGAGGTTCTGAT 1183
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1085 TGCCTGCAAGGTTTTTGAACAAGACATGGGGTTTCTATCGTCTCAAAACGAGGTTCTGAT 1144
Query 1184 GAAGGAGAAAGTACCAACTAAGGACTTGTATTTGAATCTAAAGTCATCGGACACATGGGT 1243
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1145 GAAGGAGAAAGTACCAACTAAGGACTTGTATTTAAATCTAAAGTCATCGGACACATGGGT 1204
Query 1244 CGCTGAATATAGAAAGTGGATGGACAAAGTTGGTCATGGGATGCCTTACCATTTCGGGCA 1303
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1205 CGCTGAGTATAGAAAGTGGATGGACAAAGTTGGTCACGGGATGCCTTACCATTTCGGGCA 1264
Query 1304 TAGGACCATATCTCTCCCCAAAGTCCCTCCTGTCGTGGAACATGCCCCGGCAGGGCTCAT 1363
||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||
Sbjct 1265 TAGGACCATATCTCTCCCCAAGGTCCCTCCTGTAGTGGAACATGCCCCTGCAGGGCTCAT 1324
Query 1364 TGCAGCTCTCTCTGCTTCTTACCCTGCAAAAGGCGGAATTGGGACTATGCATGCTCCCAA 1423
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1325 TGCAGCTCTCTCGGCTTCTTACCCTGCAAAAGGCGGAATTGGGACTATGCACGCTCCCAA 1384
Query 1424 TTTGGCTAACCGGTACTTCAGACATATTATTCATTGTAGAAGCTGCAGCAATGTGATCAA 1483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1385 TTTGGCTAACCGGTACTTCAGACATATTATTCATTGTAGAAGCTGCAGCAATGTGATCAA 1444
Query 1484 ATCTTTTGAGCTCTGGAAAAATATCCTCTCTGCCACGGCAGTGGCTTTGACGGCTTTGGC 1543
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1445 ATCTTTTGAGCTCTGGAAAAATATCCTCTCTGCCACGGCAGTGGCTTTGACAACTTTGGC 1504
Query 1544 CATTCTGGTGGTTAGTAGACAGTGGAAGGCTGTCCTGTTAGGTTCAGCAGCATTGTGCTC 1603
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1505 CATTCTGGTGGTTAGTAGACAGTGGAAGGCTGTCCTGTTAGGTTCGGCAGCATTGTGCTC 1564
Query 1604 AGCCGCAGCTTATACCTGCTTAAGAGCTATAAATCTAAACACCAATAACTTCATTAGAAC 1663
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1565 GGCCGCAGCTTATGCCTGCTTAAGAGCTATAAATCTAAACACCAATAACTTCATTAGAAC 1624
Query 1664 ACACAGAAGACTATGAAAATGTATAGTGTCATGT 1697
||||||||||||||||||||||||| || |||||
Sbjct 1625 ACACAGAAGACTATGAAAATGTATATTGGCATGT 1658
> Ahg481343 jgi|Araly1|481343|fgenesh2_kg.4__403__AT2G24830.1
Length=1708
Score = 132 bits (71), Expect = 1e-29
Identities = 77/80 (96%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 1709 CCAACAATATGTATTTCATGAAATAAATTTTTGCTTGTAAACGCAATTATATAATTCAGA 1768
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1708 CCAACAATATGTATTTCATGAAATATTTTTTTGCTTGTAAACGCAATTATATAATTCAGA 1649
Query 1769 AGGTTCCAATGTTTGCCATC 1788
|||||||| |||||||||||
Sbjct 1648 AGGTTCCAGTGTTTGCCATC 1629
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67115011690
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5