BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24830.1
Length=1707
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481343 jgi|Araly1|481343|fgenesh2_kg.4__403__AT2G24830.1 2566 0.0
> Ahg481343 jgi|Araly1|481343|fgenesh2_kg.4__403__AT2G24830.1
Length=1708
Score = 2566 bits (1389), Expect = 0.0
Identities = 1593/1691 (94%), Gaps = 15/1691 (1%)
Strand=Plus/Plus
Query 19 TTTTCTTCTTCCTCTCTCGTCTTCT-CTCCTCCGCGGGAGACTCTAAAATCATCTTCCCA 77
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 28 TTTTCTTCTTCCTCTCTCGTCTTCTCCTCCTCCGCGGGAGACTCTAGAATCATCTTCCCA 87
Query 78 TGGCGAGCGAAGAAAACAACGACCTTGAAAATCTTCTTGACATTCAGCTAATTGAACAAA 137
||||||||||||||||||| | ||||||| ||||||||||||||||||||| ||||||||
Sbjct 88 TGGCGAGCGAAGAAAACAAAGCCCTTGAAGATCTTCTTGACATTCAGCTAAATGAACAAA 147
Query 138 AAGAATCTCTTTCCTCCATTGACGAAGCCCTACTCTCTGACCCATCTAATCCCGAACTCC 197
||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 148 AAGAATCTCTTTCGGCCATTGACGAAGCCCTAATCTCTGACCCATCTAATCCCGAACTCC 207
Query 198 TCTCGGTCCATGAAGAACTTCTCAGTGCAATCAAGGAGGTAGAGGAAGGGCTTTTGCATT 257
|||||||||||||||||||| | ||||||||| ||||||||||||||||||||||| |
Sbjct 208 TCTCGGTCCATGAAGAACTTATTTTTGCAATCAAAGAGGTAGAGGAAGGGCTTTTGCACT 267
Query 258 TAAAACGAGCTCGGTTATTGGAGGAAGCTGATATAGTGTTGAATGGTCTAAATCATGATG 317
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 268 TAAAACGAGCTCGGTTATTGCAAGAAGCTGATATAGTGTTGAATGGTCTAAATCATGATG 327
Query 318 CTGGAGTTAAACCTGAGCATCTGGA-GCCAGAGAAAACTGAAGAGAAAAAGGATTTGGAT 376
|||||||| || || || |||| | | | | | |||||||||||||||||||
Sbjct 328 CTGGAGTT-AA----AG-ATTTGGATG-AATTG-GAGC--CAGAGAAAAAGGATTTGGAT 377
Query 377 GGATCGAAATGTCGGTTTCGACATACTGATGGTCGTTGGTATAATGGTCGTATTATTGGA 436
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 378 GGATCGAAATGTAGGTTTCGACATACCGATGGTCGTTGGTATAATGGTCGTATTATTGGA 437
Query 437 TTTGAAGGCTCTGATTCTGCTAAGATCTCTTTCCTTACACCCACATCTGAGAGTATGATG 496
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 438 TTTGAAGGTTCTGATTCTGCTAAGATCTCTTTCCTTACACCCACATCCGAGAGTATGATG 497
Query 497 ATTTGCAAGTTTTTTATGCAGCAGAGGTGTCGGTTTGGCAGTTCTTGTCGTTCATCACAT 556
|||||||||||||| | ||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 498 ATTTGCAAGTTTTTCACGCAGCAGAGGTGTCGGTATGGCAGTTCCTGTCGTTCATCACAT 557
Query 557 GGACTAGATGTGCCGATATCTTCTCTGAAGAACTATGAACAGACTGAGTGGAAGCAATTG 616
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 558 GGACTAGATGTGCCGATATCTTCTCTGAAGAACTATGAACAGACTAAGTGGAAGCAATCG 617
Query 617 ATGGTAGGCTCTAAGATTTGGGCGGTTTCTGGCAGTAAATACGATATATGGAGAAAGGCT 676
||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 618 ATGGTAGGCTCCAAAATTTGGGCAGTTTCTGGCAGTAAATACGATATATGGAGAAAGGCT 677
Query 677 GAACTTGAATCATGGGATGATGAGTTACAAGTAGGCGGAGTTGTTTTCAGAGATGATAAA 736
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 678 GAACTTGAATCATGGGATGATGAGTTACAAGTAGGCGGAGTTGTTTTCAGAGATGATAGA 737
Query 737 AGCTCTGCAAAGCTAGGATCTGATTCTTTGGCATTATCAGAGTACGCTCAGATGACTGAT 796
||||| |||||||||||||||||| ||||||||||||| |||| ||||||||||||||||
Sbjct 738 AGCTCCGCAAAGCTAGGATCTGATGCTTTGGCATTATCCGAGTTCGCTCAGATGACTGAT 797
Query 797 GATGATGGGGAAgaggaggaggaggaggaTGAACAACAGAGTGCTTCAGATTCTGAAGAT 856
|||||||||||||||||||| |||||||||||| ||| ||||||||||||| ||||||||
Sbjct 798 GATGATGGGGAAGAGGAGGACGAGGAGGATGAAGAACTGAGTGCTTCAGATACTGAAGAT 857
Query 857 TCTGTTTCAAGTGATTATGATGAAGGGTCTCCACAAGGCATAGGCTTTCTAGAAAGCACA 916
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 858 TCTGTTTCAAGTGATTATGATGAAGAGTCTCCACAAGGCATAGGTTTTCTAGAAAGCACA 917
Query 917 AATCTACCAAGAGGTGTCCAAACTGACACTGCCTTATTTGCTAAATGGGAGAATCATACT 976
|||||||||||||| |||||||||||||| |||||||||||||| ||||||||||| |||
Sbjct 918 AATCTACCAAGAGGCGTCCAAACTGACACCGCCTTATTTGCTAAGTGGGAGAATCACACT 977
Query 977 AGAGGAATAGCTTCGAAGATGATGGCAAGTATGGGTTACCGTGAAGGGATGGGTCTTGGC 1036
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 978 AGAGGAATAGCTTCGAAGATGATGGCAAGTATGGGTTACCGTGAAGGGATGGGTCTTGGT 1037
Query 1037 GTCTCTGGCCAAGGGATATTAAATCCAATCTTAGTAAAAGTACTTCCAGCAAAGCGGTCA 1096
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1038 GTCTCTGGCCAAGGGATATTAAATCCCATCTTAGTAAAAGTACTTCCTGCAAAGCGGTCA 1097
Query 1097 CTGGATTATGCTCTTGAGCACATTAGGAATGGAGAATGTAAAAGCGAGAAACAAAAGAAG 1156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1098 CTGGATTATGCTCTTGAGCACATTAGGAATGGAGAATGTAAAAGCGAGAAACAAAAGAAG 1157
Query 1157 AAAAGGAGCAGAGGTGGGAAAAGGAAGCGTGGGAAGAAGTTTGCAGAAGCAGCTAAAGCA 1216
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1158 AAAAGGAGCAGAGGTGGCAAAAGGAAGCGTGGGAAGAAGTTTGCAGAAGCAGCTAAAGCA 1217
Query 1217 GCGAAACAGGAAGAGGAATCGAAGCCAGATTTGTTTAGCTTAATCAATGAACAAATTTTT 1276
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1218 GCAAAACAGGAAGAGGAATCGAAGCCAGATTTGTTTAGCTTAATCAACGAACAAATTTTT 1277
Query 1277 CCTACCCGCCATGAGAAAGTACACAGC---GAGTCTGTAAAAAATAGGCAAAACAAAGGT 1333
||||| | ||||| ||||||| ||||| |||||||||||||| ||| |||||||||||
Sbjct 1278 CCTACGCACCATGTGAAAGTAAACAGCATAGAGTCTGTAAAAAAGAGGGAAAACAAAGGT 1337
Query 1334 CCAGTAGACAGGAAAGCTTTGGTTGAATACCAAGATGAAGTCAGAGACTTGAAGTTAGAA 1393
|||||||||||||||| |||||||| ||||||||| ||||||| ||||||||||||||||
Sbjct 1338 CCAGTAGACAGGAAAGATTTGGTTGCATACCAAGACGAAGTCAAAGACTTGAAGTTAGAA 1397
Query 1394 ATGTTGAAACTAGAACAGATGGTGAACAGAAACAAGAAAGATCTAGTTGTTTCAGAGGCT 1453
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1398 ATGATGAAACTAGAACAGATGGTGAACAGAAACAAGAAAGATCAAGTTGTTTCAGAGGCT 1457
Query 1454 GCGACGAGAAGATTGAAAGAAGTCCGAAAGGCATTGGCAAGTACATTAGCATGTCAAGCA 1513
|||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
Sbjct 1458 GCGACGAGAAGATTGAAAGAAGTCCGAAAGGCATTGGCAAATACATTAGCATCTCAAGAA 1517
Query 1514 GCTGCCTCAAATGCTATAGTAAGCAAAGAGAATGAGAAGAAATGGCTCAAGTTTTAGAAC 1573
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1518 GCTGCCTCAAATGCTGTAGTAAGCAAAGAGAAAGAGAAGAAATGGCTCAAGTTTTAGAAC 1577
Query 1574 ATAGAACTTTAAACCAGTTTAACAGAAATTTCATGGTTAAACTGTAAGATTGATGGCAAA 1633
||||||| ||| |||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 1578 ATAGAACCTTATTTCAGTTTAACAGAAATTCCATCGTTAAACTGTAAGATTGATGGCAAA 1637
Query 1634 CATTGGAACCTTCTGAATTATATAATTGCGTTTACAAGCAAAAATTTATTTCATGAAATA 1693
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1638 CACTGGAACCTTCTGAATTATATAATTGCGTTTACAAGCAAAAAAATATTTCATGAAATA 1697
Query 1694 CATATTGTTGG 1704
|||||||||||
Sbjct 1698 CATATTGTTGG 1708
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64029701845
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5