BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G24840.1

Length=934
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg899891 jgi|Araly1|899891|Al_scaffold_0004_541                     994    0.0  


> Ahg899891 jgi|Araly1|899891|Al_scaffold_0004_541
Length=672

 Score =  994 bits (538),  Expect = 0.0
 Identities = 629/672 (94%), Gaps = 9/672 (1%)
 Strand=Plus/Plus

Query  126  AAAAGCAACTAA-AACCCTCCATACaaaaaaaaCTATGATGTCGAAGAAGAAAGAAAGCA  184
            |||||||||||| ||||| ||||   || |||||||||||||||||||||||||||||||
Sbjct  8    AAAAGCAACTAAGAACCCGCCAT---AACAAAACTATGATGTCGAAGAAGAAAGAAAGCA  64

Query  185  TCGGACGACAAAAAATTCCAATGGTAAAAATAAAGAAAGAGAGCCACCGGCAAGTCACAT  244
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  65   TCGGACGACAAAAAATTCCAATGGTGAAAATAAAGAAAGAGAGCCACCGGCAAGTCACAT  124

Query  245  TCTCCAAACGCAGAGCCGGTCTCTTCAAGAAAGCTAGTGAGCTTTGCACTTTGTGTGGTG  304
            |||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct  125  TCTCGAAACGCAGAGCCGGTCTCTTCAAGAAAGCTAGTGAGCTCTGCACGTTGTGTGGTG  184

Query  305  CAGAGATTGGGATCATCGTGTTTTCTCCCGCGAAAAAGCCTTTCTCATTCGGACATCCAA  364
            |||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
Sbjct  185  CAGAGATTGGGATCATCGTGTTTTCTCCTGCAAAAAAGCCTTTCTCATTCGGACATCCGA  244

Query  365  GTGTTGAATCTGTATTGGATCGCTACGTGTCTCGAAACAATATGTCCTTAGCTCAGTCGC  424
            |||| ||||||||||||||||| ||| |||||||||||||||||||||||| |||| |||
Sbjct  245  GTGTCGAATCTGTATTGGATCGTTACATGTCTCGAAACAATATGTCCTTAGTTCAGACGC  304

Query  425  AGCAACTGCAAGGAAGCCCTGCAGCGAGCTGCGAACTGAATATGCAGTTAACGCATATTT  484
            |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  305  AGCAACCGCAAGGAAGCCCTGCAGCGAGCTGCGAGCTGAATATGCAGTTAACGCATATTT  364

Query  485  TGAGCGAGGTagaagaagagaagaagaagggtcaagcgatggaagagatgagaaaagaga  544
            ||||||||||||| |||||||||||||| |||||||| |||||||| |||||||||||||
Sbjct  365  TGAGCGAGGTAGAGGAAGAGAAGAAGAAAGGTCAAGCTATGGAAGAAATGAGAAAAGAGA  424

Query  545  gTGTGAGGCGGTCGATGATTAATTGGTGGGAAAAGCCAGTAGAGGAGATGAATATGGTTC  604
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct  425  GTGTGAGGCGGTCGATGATCAATTGGTGGGAAAAGCCAGTAGAGGAGATGAATTTGGTTC  484

Query  605  AGTTACAGGAAATGAAGTATGCATTGGAGGAGTTGAGGAAGACGGTTGTGACAAACATGG  664
            ||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct  485  AGTTACAAGAAATGAAATATGCATTGGAGGAGTTGAGGAAGACGGTTGTGACAAATATGG  544

Query  665  CGTCGTTTAATGAGGCCAAAGACGATGTGTTTGGTTTCTTGGACAACAAAGTGACAG-TC  723
            | |||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||
Sbjct  545  CATCGTTTAATGAGGCGAAAGACGATGTGTTTGGTTTCTTGGACAACAAAGTGACGGCTC  604

Query  724  CCTCCTTACGTGAACATGCCTTCTGGTCCCTCAAATATTTATAATTTTGCCAATGGAAAT  783
            | ||||||| |||||||| ||||||||| ||||| ||||||| ||   ||||| ||||||
Sbjct  605  C-TCCTTACATGAACATGTCTTCTGGTCTCTCAAGTATTTATTAT---GCCAACGGAAAT  660

Query  784  GGTTGTTTCTGA  795
            ||||||||||||
Sbjct  661  GGTTGTTTCTGA  672



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 34653731553


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5