BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24850.1
Length=1642
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481345 jgi|Araly1|481345|fgenesh2_kg.4__405__AT2G24850.1 2278 0.0
> Ahg481345 jgi|Araly1|481345|fgenesh2_kg.4__405__AT2G24850.1
Length=1523
Score = 2278 bits (1233), Expect = 0.0
Identities = 1431/1527 (94%), Gaps = 11/1527 (1%)
Strand=Plus/Plus
Query 23 TCACAACTAAAAGAAGAACTCAAACGCAAGACAGAAAGATCAATGGCGAGCAACGGAG-T 81
||||||| |||||||||| || |||||||||||||||||||||||||||||||||| | |
Sbjct 1 TCACAACCAAAAGAAGAATTCGAACGCAAGACAGAAAGATCAATGGCGAGCAACGGTGAT 60
Query 82 TACCAACTGTAACGCAAACGCCAATGTTTGGCGGTTCAAAGGAAACGGTGCAACGAGTGA 141
| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 61 GA-CAACTGTAACGCAAACGCCAACGTTTGGCGATTCAAAGGAAACGGTGCAACGAGTGA 119
Query 142 TGCGGCGGCGGTGACGTTGAGAAAGCTTGCTTTTGGGATGTTTAAAAACTGCACCATGAA 201
||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 120 TGCGGCGGCGGTGACTTTGAGAAAGCTTGCTTTCGGGATGTTCAAAAACTGCACCATGAA 179
Query 202 CAGTGGAAAGACCATTTTGTTCCCAACTCCCGGCGAGCCCTCCGCCCATTCCAACTTCAG 261
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 180 CAGTGGAAAGACCATTTTGTTCCCAACTCCCGGCGAGCCCTCCGCTCATCCCAACTTCAG 239
Query 262 GACTTGCCCGGAAGCCGAGGAAGCCGTTGCCGCAGCTGCACGCTCCGGCATGGCTAACTC 321
||||||||| || || |||||||| || || ||||| |||||||||||||||||||||||
Sbjct 240 GACTTGCCCCGAGGCGGAGGAAGCTGTGGCTGCAGCCGCACGCTCCGGCATGGCTAACTC 299
Query 322 TTACGCACCCAGCCCTGGAGTTTTCAAGGCTAGAAGGGCGGTGGCTGAATATTTAAACGG 381
||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 300 TTACGCACCTAGCCCGGGAGTTTTCAAGGCTAGAAGGGCGGTGGCTGATTATTTAAACGT 359
Query 382 AGAACTTCCGACGAAGCTGAAGGCC-GAGGATGTGTATATCACCGGAGGATGTAACCAAG 440
||| ||||| ||||||||||| ||| || |||||||||||||||||||||||||||||||
Sbjct 360 AGAGCTTCCAACGAAGCTGAA-GCCAGAAGATGTGTATATCACCGGAGGATGTAACCAAG 418
Query 441 CCATAGAGATCGTGA-TAGATTCTCTTGCCGGAAATCCATCCGCCAACATTCTACTTCCA 499
|||||||||| || | ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 419 CCATAGAGATTGT-ATTAGATTCTCTTGCCGGAAATCCAGCCGCCAACATTCTACTTCCA 477
Query 500 AGGCCGGGATATCCTCACTACGATGCTCGTGCTGTCTATAGCGGCCTCGAGATTCGCAAA 559
|||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 478 AGGCCGGGCTATCCTCACTACGATGCTCGTGCTGTCTATAACGGCCTTGAGATTCGCAAA 537
Query 560 TACGATCTTCTCCCCGAGAGTGATTGGGAAATCAATCTCGATGGCC-TCGAGGCGGCTGC 618
||||||||||||||||||||||||||||||||| ||||||| |||| || |||| |||||
Sbjct 538 TACGATCTTCTCCCCGAGAGTGATTGGGAAATCGATCTCGACGGCCTTC-AGGCTGCTGC 596
Query 619 GGATGAGAATACCGTCGCAATGGTAATCATCAACCCCAACAATCCATGTGGAAACGTCTA 678
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 597 GGATGAGAATACCGTCGCAATGGTTATCATCAACCCCAATAATCCATGTGGAAACGTCTA 656
Query 679 CACCTACGACCATCTCAACAAGGTCGCGGAGATGGCTAGAAAACTCGGTATAATGATAAT 738
|||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||
Sbjct 657 CACCTACGACCATCTCAACAAGGTCGCGGAAATGGCTAGGAAACTCGGTATATTGATAAT 716
Query 739 ATCCGACGAAGTATATGATCATGTTGTATATGGAGACAAGCCTTTTATTCCCATGGGGAA 798
||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 717 ATCCGACGAAGTATACGATCATGTTGTGTATGGAGACATGCCTTTTATTCCCATGGGGAA 776
Query 799 GTTTGCATCAATAGCTCCGGTGATCACGCTCGGATCCATATCCAAAGGATGGGTCAACCC 858
||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 777 GTTTGCATCGATAGCTCCGGTGATCACGCTCGGATCCATATCCAAAGGGTGGGTCGTCCC 836
Query 859 AGGCTGGAGAGTTGGCTGGATCGCCATGAACGATCCTAATGGTATCTTTGTATCTACAGG 918
||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||
Sbjct 837 GGGCTGGAGAGTTGGCTGGATCGCCATGAACGATCCCAAGGGTATCTTTATATCTACAGG 896
Query 919 GGTAGTTCAAGCAATAGAGGATTTTCTTGATTTAACTCCACAGCCTTCATTTATTCTCCA 978
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 897 GGTAGTTCAAGCAATAGAGGATTTTCTTGATTTAACTCCACAACCTTCATTTATTCTTCA 956
Query 979 GGAAGCACTTCCTGATATATTGGAGAAAACACCTAAAGAGTTCTTCGAGAAGAAGATCAA 1038
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 957 GGAAGCACTTCCTGATATATTGGAGAAAACACCTAAAGAGTTCTTCGACAAGAAGATCAA 1016
Query 1039 AGCCATGAGACGCAACGTCGAGCTTTCATGTGAGAGGCTCAAGGATATTCCTTGTCTCTT 1098
||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1017 AGCCATGAGGCGTAACGTCGAGCTTTCATGTGAGAGGCTCAAGGACATTCCTTGTCTCTT 1076
Query 1099 TTGTCCCAAGAAACCCGAATCTTGTTCTTATTTATGGTTGAAGCTTGACACATCAATGTT 1158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 TTGTCCCAAGAAACCCGAATCTTGTTCTTATTTATGGTTGAAGCTTGACACATCAATGTT 1136
Query 1159 GAATAATATCAAAAATGATTTTGATTTCTGCACGAAGCTAGTTAGTGAGGAGAGTCTTAT 1218
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 GGATAATATCAAAAATGATTTTGATTTCTGCACGAAGCTAGTTAGTGAGGAGAGTCTTAT 1196
Query 1219 CCTTATACCAGGAGTGGCTCTAGGGGCAGAGAATTGGGTGAGGATATCGATAGGAACCGA 1278
||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 1197 CCTAATACCAGGAGTGGCTCTAGGGACAGAGAATTGGGTGAGGATATCGATCGGAACCGA 1256
Query 1279 CGAATCAGTGGTACAAGAAATATTTGACAGACTAAAAGGTTTCTATGATCGTCATGCCAT 1338
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 CGAATCAGTGGTAGAAGAAATATTTGACAGACTAAAAGGTTTCTATGATCGTCATGCCAT 1316
Query 1339 CTCCAAGGAAGCTATCAAACTCAGTGGCCATGCCATTAACCAGATCGTCGTCTCTGTCA- 1397
|||||||| ||| |||| ||||| ||| |||||||||||||| || ||||||||||||
Sbjct 1317 CTCCAAGGGAGCAATCACACTCAATGGTCATGCCATTAACCAAATAGTCGTCTCTGTCGT 1376
Query 1398 ACTGATTGTAGTAGTCCTATGCCACAAGTCCACATTATAATTTGTGCGTAATTCCTTAAT 1457
| |||||| ||| ||| | |||||||||||||||||| | ||| || ||| |||| ||||
Sbjct 1377 A-TGATTGAAGTTGTCTTTTGCCACAAGTCCACATTAGAGTTTCTGTGTACTTCCATAAT 1435
Query 1458 TATCAGGAACACAATCAAGA-AAAATAGCATTGGATAATGAAATAAAGATGTGTGAAAAA 1516
|||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||| |
Sbjct 1436 TATCAGGAACACAATCAAGAGAAAACAGCATTGTATAATGAAATAAAGATGTGTGAAATA 1495
Query 1517 TAAAAGGATATTTGTTTTCATTATTAT 1543
||||| |||| | ||||||||||||||
Sbjct 1496 TAAAATGATACTGGTTTTCATTATTAT 1522
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61553835920
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5