BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24860.1
Length=867
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481346 jgi|Araly1|481346|fgenesh2_kg.4__406__AT2G24860.1 833 0.0
> Ahg481346 jgi|Araly1|481346|fgenesh2_kg.4__406__AT2G24860.1
Length=772
Score = 833 bits (451), Expect = 0.0
Identities = 533/572 (93%), Gaps = 8/572 (1%)
Strand=Plus/Plus
Query 49 ATTTCAACCTTCTCGGCgaagaagaagaagaagaagagaaAATGACGATTTGCATGTGTT 108
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATTTAAACCTTCTCGGCGAAGAAGAAGAAGAAGAAGAGAAAATGGCGATTTGCATGTGTT 60
Query 109 GCGATTCACATCTCG--T-AGCGAAATCGATTCTAAATCCATGGAATTCTCCTAGGA-TA 164
|||| |||||||||| | | ||||||||| | | |||||||||||||| || | | |
Sbjct 61 GCGACTCACATCTCGTATCATCGAAATCGACTATGAATCCATGGAATTCGCC-AAAACGA 119
Query 165 ACGAAGCTAGGTTTCGTACCAGTCGTTCGCCGTTTTCCAGCTACTACTACCGTCAAGGCT 224
|||||||||||||| ||| ||||| |||||| ||||| ||||||||||||||||| |||
Sbjct 120 ACGAAGCTAGGTTTTGTATTAGTCGGTCGCCGCTTTCCGGCTACTACTACCGTCAAAGCT 179
Query 225 TCGGCGGTGGATTCACCTGAGAGTTCTTCAAATTTCGCCAAGCGTATGGATCAAGCTTGG 284
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 180 TCGGCGGTGGATTCACCTGAGAGTTCTTCCAATTTCGCTAAGCGTATGGATCAAGCTTGG 239
Query 285 ATTATCTCACAGCAACCAAGTCCTGTTGGATGTTCATCGTGCAATTCAAAGGGTCATGTG 344
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 ATTATCTCACAGCAACCAAGTCCTGTTGGATGTTCATCGTGCAATTCAAAGGGTCATGTT 299
Query 345 GAATGCAAATGGTGTGCGGGTACAGGATTCTTCATCCTTGGTGATAACATGCTTTGCCAG 404
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 300 GAATGCAAATGGTGTGCGGGTACAGGATTCTTCATCCTCGGTGATAACATGCTTTGCCAG 359
Query 405 GTTCCCTCAAGGAATACTTCATGTGTAATCTGCTCTGGACAGGGTTCTGCTAGCTGTAGC 464
|| ||||||||||||||||| || || |||||||||||||||||||||||||||||||||
Sbjct 360 GTACCCTCAAGGAATACTTCTTGCGTCATCTGCTCTGGACAGGGTTCTGCTAGCTGTAGC 419
Query 465 GATTGCAAAGGAACGGGGTTTCGTGCCAAGTGGTTGGAAAAACCTCCAGTGCCAACATAA 524
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 420 GATTGCAAAGGAACGGGGTTTCGTGCCAAGTGGTTGGAAAAGCCTCCAGTGCCAACATAA 479
Query 525 CTGATGAACAAAAGCAAGTTAAGCTTTTTGGTCTTTGATGATTTCTTATGGAGGAAAA-A 583
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
Sbjct 480 CTGATGAACAAAAGCAAGTTAAGTTTTTTGGTCTTTGATGATTTCTTATGGAGCCAAATA 539
Query 584 TGTTTATATATTGATTCAAGTGGAACATGAAT 615
||||||||| | ||||||||||||| ||||||
Sbjct 540 TGTTTATAT-T-GATTCAAGTGGAATATGAAT 569
Score = 270 bits (146), Expect = 1e-71
Identities = 188/207 (91%), Gaps = 7/207 (3%)
Strand=Plus/Plus
Query 654 ATATGTAAGTTCATTTATTCATTTCCC-CTTGTTCTGTCTGTACAACCAAAGGCCTACAC 712
||||||| ||||||||||||||||||| | |||||||| |||||||||||||| |||| |
Sbjct 568 ATATGTATGTTCATTTATTCATTTCCCAC-TGTTCTGTTTGTACAACCAAAGG-CTACTC 625
Query 713 AAGAGTTCTTGTAATC--GACACGTGAGTTTTACGATTTCGATCATTGGAGTAGCTCAAC 770
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||
Sbjct 626 AAGAGTTCTTGTAATCAACACACGTGAGTTTTACGATTTCGATCATTAGAGTAGCTCCAC 685
Query 771 GGAAGAACATTAGTAGCACAGGGTCACCTTCGTATTTCTTTTGATATTTTC-TCGTTGTA 829
||||||||||||||||||| || || ||||||||| ||||||||| ||||| | || |||
Sbjct 686 GGAAGAACATTAGTAGCACCGGATCGCCTTCGTATATCTTTTGATCTTTTCAT-GTGGTA 744
Query 830 GGGTTAAATCATGTGCATCTTCCTTAC 856
|||||||||||||||||||||||||||
Sbjct 745 GGGTTAAATCATGTGCATCTTCCTTAC 771
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32099496114
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5