BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24870.1
Length=357
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932605 jgi|Araly1|932605|scaffold_400593.1 387 4e-107
Ahg932602 jgi|Araly1|932602|scaffold_400590.1 368 1e-101
> Ahg932605 jgi|Araly1|932605|scaffold_400593.1
Length=454
Score = 387 bits (209), Expect = 4e-107
Identities = 318/367 (87%), Gaps = 21/367 (6%)
Strand=Plus/Plus
Query 1 ATGCTTGACCATGTATTCGGCTCTGGAATCAGGATCA-CCAACGAACTCAAATTCAATAA 59
||||||| |||||||| |||||||||||||||||| | | ||||||||||||||||| ||
Sbjct 64 ATGCTTGGCCATGTATCCGGCTCTGGAATCAGGAT-AGCGAACGAACTCAAATTCAAGAA 122
Query 60 ACTTCTCAGGATTGGATGTTATTCCAAAGATGACAAATTTGGTCCAAAAACAATACCAAT 119
||||||| ||||| ||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 123 ACTTCTCTGGATTAGATGTTATTCCAAAGATGATGTATTCGGTCCAAAAACAATACCAAT 182
Query 120 CGGCA-AACATGTTGAAATCAATTTTATG-ATTAATTT-TTGGCGTACGACGCGTTTTAT 176
||| | |||||||||| || |||| | |||||||| | ||| |||||||||||||||
Sbjct 183 CGG-ACAACATGTTGACATTTCTTTT-CGTATTAATTTATGGGC-TACGACGCGTTTTAT 239
Query 177 GTGTCA-TTTGGA-ACAAGGA-CCTAACTATAAACATTATCAGAAATTTACAGCATTCAA 233
|||| | ||| || |||| || |||||||||||||||||||| |||||||||||||||||
Sbjct 240 GTGT-ACTTT-GAGACAA-GAGCCTAACTATAAACATTATCAAAAATTTACAGCATTCAA 296
Query 234 GC-TTTCTGGTTTTATGGATGAAGGAGGTATATGGGACTGGAGAGCAAGAGAAGATGGAA 292
|| |||| ||| ||| |||| | ||||| ||||||||||||||||||||||||||||||
Sbjct 297 GCTTTTC-GGTGTTACGGATCATGGAGGCCTATGGGACTGGAGAGCAAGAGAAGATGGAA 355
Query 293 TCTATTTAGACAAAGAAGGCGGCAAACATATT-GGAAAATC-GATTAATATGCATAAAAG 350
| |||||| |||||||||| |||| ||||||| |||| || | |||||||||||||||
Sbjct 356 TATATTTAAACAAAGAAGGTGGCAGACATATTAGGAA--TCCGGTTAATATGCATAAAA- 412
Query 351 TGTATGA 357
|||||||
Sbjct 413 TGTATGA 419
> Ahg932602 jgi|Araly1|932602|scaffold_400590.1
Length=452
Score = 368 bits (199), Expect = 1e-101
Identities = 314/366 (86%), Gaps = 22/366 (6%)
Strand=Plus/Plus
Query 1 ATGCTTGACCATGTATTC-GGCTCTGGAATCA-GGATCACCAACGAACTCAAATTCAATA 58
||||||||||||||| || ||||||||||| | ||||| | ||||||||||||||||| |
Sbjct 63 ATGCTTGACCATGTA-TCTGGCTCTGGAAT-ATGGATCGCGAACGAACTCAAATTCAAGA 120
Query 59 AACTTCTCAGGATTGGATGTTATTCCAAAGATGACAAATTTGGTCCA-AAAACAATACCA 117
|| ||||| ||||| |||||||||||||||||||||||||||||||| || | |||||||
Sbjct 121 AAATTCTCTGGATTAGATGTTATTCCAAAGATGACAAATTTGGTCCACAAGA-AATACCA 179
Query 118 ATCGGCA-AACATGTTGAAATCAATTTTATG-ATTAATTT-TTGGCGTACGACGCGTTTT 174
||||| | |||||| |||||| |||| | |||||||| | ||| ||| |||||||||
Sbjct 180 ATCGG-ACAACATGCTGAAATTTCTTTT-CGTATTAATTTCTGGGC-TACAACGCGTTTT 236
Query 175 ATGTGT-CATTTGGA-ACAAGGACCTAACTATAAACATTATCAGAAATTTACAGCATTCA 232
|||||| || || || |||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 237 ATGTGTACA-TT-GAGACAAGGGCCTAACTATAAACATTATCAGGAATTTACAGCATTCA 294
Query 233 AGCTTTCTGGTTTTATGGATGAAGGAGGTATATGGGACTGGAGAGCAAGAGAAGATGGAA 292
||||||| |||||||||||| | ||| | ||||||||||||||||||||||||||||||
Sbjct 295 AGCTTTCCGGTTTTATGGATCATGGAAGCCTATGGGACTGGAGAGCAAGAGAAGATGGAA 354
Query 293 TCTATTTAGACAAAGAAGGCGGCAAACATATTGGAAAATC-GATTAATATGCATAAAAGT 351
|||||||| | | | |||| | | |||||||| | || || | ||||| |||| ||||||
Sbjct 355 TCTATTTA-A-ATA-AAGGTGACCAACATATTAGTAA-TCCGGTTAATTTGCA-AAAAGT 409
Query 352 GTATGA 357
||||||
Sbjct 410 GTATGA 415
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12705811137
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5