BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G24940.1 Length=2839 Score E Sequences producing significant alignments: (Bits) Value Ahg932607 jgi|Araly1|932607|scaffold_400595.1 556 2e-157 Ahg932608 jgi|Araly1|932608|scaffold_400596.1 510 2e-143 Ahg478443 jgi|Araly1|478443|fgenesh2_kg.3__1144__AT4G36925.1 281 2e-74 > Ahg932607 jgi|Araly1|932607|scaffold_400595.1 Length=344 Score = 556 bits (301), Expect = 2e-157 Identities = 319/327 (98%), Gaps = 3/327 (1%) Strand=Plus/Plus Query 35 CAGAGC--TTTAAAGAAAAAGATGGAATTCACCGCAGAGCAGCTAAGCCAATACAACGGC 92 |||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1 CAGAGCTTTTTAGAGAAAAA-ATGGAATTCACCGCAGAGCAGCTAAGCCAATACAACGGC 59 Query 93 ACCGACGAATCAAAGCCGATCTACGTCGCAATCAAAGGCCGTGTGTTCGATGTCACCACC 152 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 60 ACCGACGAATCAAAGCCGATCTACGTCGCAATCAAAGGCCGTGTATTCGATGTCACCACC 119 Query 153 GGAAAATCCTTCTACGGCTCCGGAGGCGATTACTCGATGTTCGCCGGAAAAGACGCGAGC 212 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 120 GGAAAATCCTTCTACGGCTCCGGAGGCGATTACGCGATGTTCGCCGGAAAAGACGCGAGC 179 Query 213 AGAGCTTTGGGTAAGATGAGTAAGAACGAAGAAGATGTGTCTCCTTCTCTTGAAGGTCTC 272 ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 180 AGAGCTTTGGGAAAGATGAGTAAGAACGAAGAAGATGTATCTCCTTCTCTTGAAGGTCTC 239 Query 273 ACTGAGAAAGAGATCAATACTCTTAATGATTGGGAGACCAAATTTGAAGCTAAGTATCCT 332 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 ACTGAGAAAGAGATCAATACTCTTAATGATTGGGAGACCAAATTTGAAGCTAAGTATCCT 299 Query 333 GTCGTTGGCCGTGTTGTCTCTTAGGTC 359 ||||||||||||||||||||||||||| Sbjct 300 GTCGTTGGCCGTGTTGTCTCTTAGGTC 326 > Ahg932608 jgi|Araly1|932608|scaffold_400596.1 Length=806 Score = 510 bits (276), Expect = 2e-143 Identities = 378/426 (89%), Gaps = 12/426 (3%) Strand=Plus/Minus Query 1091 AGAGGCATCCTAACTTAGATATTATTTTGACATTTTAAATaaaaaaaTGCACAAACCACC 1150 |||| |||||||||||||||||||||||| |||||||||| ||| ||||||||||||||| Sbjct 806 AGAGCCATCCTAACTTAGATATTATTTTGGCATTTTAAAT-AAACAATGCACAAACCACC 748 Query 1151 ACCTCCAAGAACTAGCTACCTTGCTGGATTTGAACCAAACCTAGAACATAAATGAGGAGA 1210 |||||||||||||| ||||||| ||||||||| |||||||| |||||||| |||||||| Sbjct 747 TCCTCCAAGAACTAGATACCTTGTTGGATTTGAGCCAAACCTGGAACATAAGTGAGGAGA 688 Query 1211 CGTGGAGGGGTAGGAGATTCGGCACCATGTTGATCCTCAGGTAGGTATTTATCCTTTCCC 1270 || |||||||||| ||| |||||||||||||||| | ||| |||||||| ||||||| Sbjct 687 ---GGTGGGGTAGGAGTTTCAGCACCATGTTGATCCTTATGTATGTATTTATTCTTTCCC 631 Query 1271 ACAATTTGT-AAAACGTTGTTGGAGAACC-CGGGGTGATTACAAGACACTACAACTTTGT 1328 ||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 630 ACAATTTGTCAAAATGTTGTTGGAGAACCTGGGGGTGATTACAAGACACTACAACTTTGT 571 Query 1329 TCTCTATG-TCGACTAAGAAACTCAACCCAAAACATAACC-CTAAATGATAGCGGTCATC 1386 |||| || |||||||||||||||| ||||| ||| |||| | |||||||||||| ||| Sbjct 570 TCTCC-TGGTCGACTAAGAAACTCATCCCAATACAAAACCGC-AAATGATAGCGGAGATC 513 Query 1387 AAATTTCGACACTGTCAGGAACTTGCTCTATGAAATGGCTTC-GTACTCTCCATCTTATT 1445 |||||||||||||||||||||||||||| |||| ||| ||| ||| ||||||||||| | Sbjct 512 AAATTTCGACACTGTCAGGAACTTGCTCCATGATATGTCTTTTGTAATCTCCATCTTAGT 453 Query 1446 CGCTATCCATACCTCAGAG-CTCTGAGCAGCAAATATACAAAGTTGTTGCGCTTCTCTAG 1504 |||||||||||||| |||| |||||| |||||||||||||||||||||| ||||||| | Sbjct 452 CGCTATCCATACCTTAGAGGCTCTGAATAGCAAATATACAAAGTTGTTGCTCTTCTCTTG 393 Query 1505 TCATTG 1510 || ||| Sbjct 392 TCCTTG 387 > Ahg478443 jgi|Araly1|478443|fgenesh2_kg.3__1144__AT4G36925.1 Length=363 Score = 281 bits (152), Expect = 2e-74 Identities = 168/176 (95%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 2529 CGTTGGTAGCAGAAGATATTGTAGCGAAGACTGCCTTATCATTGAATAACGCCCTCTTGT 2588 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 128 CGTTGGTAGCAGAAGATATTGTAGCGAAGACTGCCTTATCATTGAAGAACGCCCTCTTGT 187 Query 2589 TGGCGTGGAATGAAGACTCTTTGGTTTTGCAATTGTTCATGGACTCCCAGTTCAGTGTAA 2648 || |||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||| Sbjct 188 TGTCGTGGAATGAAGACTCTTTGATTTTGCAATTGTTCTTGGACTCCCAGTTCATTGTAA 247 Query 2649 AATCTTTCAAGTTACTCGAAGTCACCGTTGAGCTAGGGAGAATTCTGCTTGTTTTA 2704 | ||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 248 TACCTTTCAAGTCACTCGAAGTCACCGTTGAGCTAGGGAGAATTCTGCTTGTTTTA 303 Score = 172 bits (93), Expect = 1e-41 Identities = 103/108 (95%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 2357 ATCTATGTTCTATCAAGTTCCCCTGTTGTTGGGAAATCTTTATTTGCAGGGAATGAAAGC 2416 |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 4 ATCTATGTTCTATCAAATTCCCCTGTTGGTGGGAAATCTTTATTTGCAGGGAATGAAAGC 63 Query 2417 TTCTTTGGTGTTTGTGGATTTGCTGTTGCATCTTGTTTGGACATGCTA 2464 |||||||||||||||||| | ||||| ||||||||||||||||||||| Sbjct 64 TTCTTTGGTGTTTGTGGACTCGCTGTCGCATCTTGTTTGGACATGCTA 111 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 107147859185 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5