BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24940.1
Length=2839
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932607 jgi|Araly1|932607|scaffold_400595.1 556 2e-157
Ahg932608 jgi|Araly1|932608|scaffold_400596.1 510 2e-143
Ahg478443 jgi|Araly1|478443|fgenesh2_kg.3__1144__AT4G36925.1 281 2e-74
> Ahg932607 jgi|Araly1|932607|scaffold_400595.1
Length=344
Score = 556 bits (301), Expect = 2e-157
Identities = 319/327 (98%), Gaps = 3/327 (1%)
Strand=Plus/Plus
Query 35 CAGAGC--TTTAAAGAAAAAGATGGAATTCACCGCAGAGCAGCTAAGCCAATACAACGGC 92
|||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 CAGAGCTTTTTAGAGAAAAA-ATGGAATTCACCGCAGAGCAGCTAAGCCAATACAACGGC 59
Query 93 ACCGACGAATCAAAGCCGATCTACGTCGCAATCAAAGGCCGTGTGTTCGATGTCACCACC 152
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 60 ACCGACGAATCAAAGCCGATCTACGTCGCAATCAAAGGCCGTGTATTCGATGTCACCACC 119
Query 153 GGAAAATCCTTCTACGGCTCCGGAGGCGATTACTCGATGTTCGCCGGAAAAGACGCGAGC 212
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 120 GGAAAATCCTTCTACGGCTCCGGAGGCGATTACGCGATGTTCGCCGGAAAAGACGCGAGC 179
Query 213 AGAGCTTTGGGTAAGATGAGTAAGAACGAAGAAGATGTGTCTCCTTCTCTTGAAGGTCTC 272
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 180 AGAGCTTTGGGAAAGATGAGTAAGAACGAAGAAGATGTATCTCCTTCTCTTGAAGGTCTC 239
Query 273 ACTGAGAAAGAGATCAATACTCTTAATGATTGGGAGACCAAATTTGAAGCTAAGTATCCT 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 ACTGAGAAAGAGATCAATACTCTTAATGATTGGGAGACCAAATTTGAAGCTAAGTATCCT 299
Query 333 GTCGTTGGCCGTGTTGTCTCTTAGGTC 359
|||||||||||||||||||||||||||
Sbjct 300 GTCGTTGGCCGTGTTGTCTCTTAGGTC 326
> Ahg932608 jgi|Araly1|932608|scaffold_400596.1
Length=806
Score = 510 bits (276), Expect = 2e-143
Identities = 378/426 (89%), Gaps = 12/426 (3%)
Strand=Plus/Minus
Query 1091 AGAGGCATCCTAACTTAGATATTATTTTGACATTTTAAATaaaaaaaTGCACAAACCACC 1150
|||| |||||||||||||||||||||||| |||||||||| ||| |||||||||||||||
Sbjct 806 AGAGCCATCCTAACTTAGATATTATTTTGGCATTTTAAAT-AAACAATGCACAAACCACC 748
Query 1151 ACCTCCAAGAACTAGCTACCTTGCTGGATTTGAACCAAACCTAGAACATAAATGAGGAGA 1210
|||||||||||||| ||||||| ||||||||| |||||||| |||||||| ||||||||
Sbjct 747 TCCTCCAAGAACTAGATACCTTGTTGGATTTGAGCCAAACCTGGAACATAAGTGAGGAGA 688
Query 1211 CGTGGAGGGGTAGGAGATTCGGCACCATGTTGATCCTCAGGTAGGTATTTATCCTTTCCC 1270
|| |||||||||| ||| |||||||||||||||| | ||| |||||||| |||||||
Sbjct 687 ---GGTGGGGTAGGAGTTTCAGCACCATGTTGATCCTTATGTATGTATTTATTCTTTCCC 631
Query 1271 ACAATTTGT-AAAACGTTGTTGGAGAACC-CGGGGTGATTACAAGACACTACAACTTTGT 1328
||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 630 ACAATTTGTCAAAATGTTGTTGGAGAACCTGGGGGTGATTACAAGACACTACAACTTTGT 571
Query 1329 TCTCTATG-TCGACTAAGAAACTCAACCCAAAACATAACC-CTAAATGATAGCGGTCATC 1386
|||| || |||||||||||||||| ||||| ||| |||| | |||||||||||| |||
Sbjct 570 TCTCC-TGGTCGACTAAGAAACTCATCCCAATACAAAACCGC-AAATGATAGCGGAGATC 513
Query 1387 AAATTTCGACACTGTCAGGAACTTGCTCTATGAAATGGCTTC-GTACTCTCCATCTTATT 1445
|||||||||||||||||||||||||||| |||| ||| ||| ||| ||||||||||| |
Sbjct 512 AAATTTCGACACTGTCAGGAACTTGCTCCATGATATGTCTTTTGTAATCTCCATCTTAGT 453
Query 1446 CGCTATCCATACCTCAGAG-CTCTGAGCAGCAAATATACAAAGTTGTTGCGCTTCTCTAG 1504
|||||||||||||| |||| |||||| |||||||||||||||||||||| ||||||| |
Sbjct 452 CGCTATCCATACCTTAGAGGCTCTGAATAGCAAATATACAAAGTTGTTGCTCTTCTCTTG 393
Query 1505 TCATTG 1510
|| |||
Sbjct 392 TCCTTG 387
> Ahg478443 jgi|Araly1|478443|fgenesh2_kg.3__1144__AT4G36925.1
Length=363
Score = 281 bits (152), Expect = 2e-74
Identities = 168/176 (95%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 2529 CGTTGGTAGCAGAAGATATTGTAGCGAAGACTGCCTTATCATTGAATAACGCCCTCTTGT 2588
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 128 CGTTGGTAGCAGAAGATATTGTAGCGAAGACTGCCTTATCATTGAAGAACGCCCTCTTGT 187
Query 2589 TGGCGTGGAATGAAGACTCTTTGGTTTTGCAATTGTTCATGGACTCCCAGTTCAGTGTAA 2648
|| |||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||
Sbjct 188 TGTCGTGGAATGAAGACTCTTTGATTTTGCAATTGTTCTTGGACTCCCAGTTCATTGTAA 247
Query 2649 AATCTTTCAAGTTACTCGAAGTCACCGTTGAGCTAGGGAGAATTCTGCTTGTTTTA 2704
| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 248 TACCTTTCAAGTCACTCGAAGTCACCGTTGAGCTAGGGAGAATTCTGCTTGTTTTA 303
Score = 172 bits (93), Expect = 1e-41
Identities = 103/108 (95%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 2357 ATCTATGTTCTATCAAGTTCCCCTGTTGTTGGGAAATCTTTATTTGCAGGGAATGAAAGC 2416
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 4 ATCTATGTTCTATCAAATTCCCCTGTTGGTGGGAAATCTTTATTTGCAGGGAATGAAAGC 63
Query 2417 TTCTTTGGTGTTTGTGGATTTGCTGTTGCATCTTGTTTGGACATGCTA 2464
|||||||||||||||||| | ||||| |||||||||||||||||||||
Sbjct 64 TTCTTTGGTGTTTGTGGACTCGCTGTCGCATCTTGTTTGGACATGCTA 111
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107147859185
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5