BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24950.1
Length=1236
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481347 jgi|Araly1|481347|fgenesh2_kg.4__407__AT2G24950.1 1583 0.0
Ahg330287 jgi|Araly1|330287|fgenesh1_pm.C_scaffold_7002514 619 1e-176
> Ahg481347 jgi|Araly1|481347|fgenesh2_kg.4__407__AT2G24950.1
Length=1183
Score = 1583 bits (857), Expect = 0.0
Identities = 1095/1207 (91%), Gaps = 27/1207 (2%)
Strand=Plus/Plus
Query 33 TTTTACCCTAACTCTCTTCTTAACGAATATGAAAATGAGTTGTTGGAGGATGTTGCTATT 92
||| ||||||||||||||||||||||||||||| | |||||||||||||||||| ||||
Sbjct 1 TTTCACCCTAACTCTCTTCTTAACGAATATGAATTTAAGTTGTTGGAGGATGTTGTTATT 60
Query 93 CTTGTTGGGTTATATCTTGTATTTTTATCGTTTTGTGGATGCTGAAATATTACAAACTTT 152
|||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||
Sbjct 61 CTTGTTGGGTTATATCTTGTATACTAATCGTTTTGTGGATGCTGAAATATTGCAAACTTT 120
Query 153 CAGTGATTTTGAAATTGAAGAGCAACTTAAAGTCGTCAACAAACCTGCTACGAAAATTAT 212
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CAGTGGTTTTAAAATTGAAGAGCAACTTAAAGTCGTCAACAAACCTGCTACGAAAATTAT 180
Query 213 CAAGACTATACATGGCGATTCATAT-GATTGCGTAGATTTTTACAAACAACCCGCGTTTG 271
||||||||||||||||||||||||| || || || |||||||||| |||||| |||||||
Sbjct 181 CAAGACTATACATGGCGATTCATATGGA-TGTGTGGATTTTTACAGACAACCAGCGTTTG 239
Query 272 ACCATCCATTGATGAAAAATCATTTATTTCATTACAAAATGCGTCGGCCATCATCCTTAC 331
||||||| | |||||||||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct 240 ACCATCCGTCGATGAAAAATCACTTATTTCATTATGAAATGGGTCGGCCATCATCCTTAC 299
Query 332 GAACCTCAAGAGCAAGTAATAGAAAGTTTGGTTACTTGTGGAAAAATGGCATAGGGTGTC 391
||| |||||||||| |||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 300 AAACTTCAAGAGCAAATAATGGAAAGTTTGGTTACTTGTGGAAAAATGGCATAGGATGTC 359
Query 392 CAATTGGTACCGTACCTATaaaaaaaaTTGCTAAAGACGAACTCTTGAAATTAAATTTGT 451
| ||||||||||| |||||||||| ||||||||||| | || | | || |
Sbjct 360 CCATTGGTACCGTGCCTATAAAAACAATTGCTAAAG--G-----TT---A-T-AA---G- 403
Query 452 TCTCTAATAGTTATAACCCTCGAGGTTCTTGGAACTTTACTTATAATCAATATAATGTTG 511
| |||||| |||||| ||| |||||||||||||||| ||||||||| ||||||||||||
Sbjct 404 -C-CTAATAATTATAAGCCTAGAGGTTCTTGGAACTTCACTTATAATAAATATAATGTTG 461
Query 512 ATAATAATCAACATCATTTTGCAGTGTCCCGTACCAAGAAGATAATAGGGAAAATTTACA 571
|| |||||||||||||||||||||||| ||||||||| || || ||| ||||| || |
Sbjct 462 ATGGTAATCAACATCATTTTGCAGTGTCTCGTACCAAG-GGA-AA-AGGAAAAATCTATA 518
Query 572 ATGGAGCAACAATGATACTTTCTATAAATGATCCTAAAGTTAAACCTTTACAATATAGTT 631
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 519 ATGGAGCAACAATGATACTTTCTATAAATGATCCTAAAATTAAATCTTTACAATATAGTT 578
Query 632 CTGCTCGTATGCACGTTCAAATTGGAGATGATTTTATTCAAGCAGGTTGGACTGTGAATC 691
| ||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||
Sbjct 579 CCGCTCGTATGCACGTTCAAATTGGAGATGATTTTATTCAAGCTGGGTGGACTGTAAATC 638
Query 692 AAAAGTTATATTCTGACAACAAGACTCGAAGTTATGTGTATACGAAAATTGGTGAAAACC 751
||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||| |
Sbjct 639 AAAAGTTGTATTCTGACAACAAGACTCGAAGTTATGTGTATACGAAAGTGGGTGAAAATC 698
Query 752 AATGTTATAACAGCATGTGTCCAGCTGGGATTATAATGGTCAGTTCAGATATTGCTCTTG 811
|||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 699 AATGTTATAACAGCCTGTGTCCAGCTGGGATTATAGTGGTCAGTTCAGATATTTCTCTTG 758
Query 812 GTTTGGATTTAGGTCCTCCTTGTGTTCGTGGTTCAAGAACAATG-GTCTCTTCTGAATTT 870
|||| |||||||||||||| ||||||||||||||||| | | | |||| ||||||||||
Sbjct 759 GTTTTTATTTAGGTCCTCCTAGTGTTCGTGGTTCAAGATC-AGGTGTCTATTCTGAATTT 817
Query 871 GGTTTACTCAAGAATAAGGAAAATGGTGATTGGTGGCTCAAGTTAGGAGGACAAGAAATT 930
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 818 GGTTTACTCAAGAATAAGGAAAATGGTAATTGGTGGCTCAAGTTAGGAGGACAAGAAATT 877
Query 931 GGGTATTGGCCAGCaaaaaaaTTTAAAGAGACTTCGGCCAACAATATCGAATGGGGAGGA 990
||||||||||||| |||||| ||| || | | || |||||||||||||| |||||||||
Sbjct 878 GGGTATTGGCCAGGAAAAAATTTTCAACAAAGTTTTGCCAACAATATCGAGTGGGGAGGA 937
Query 991 GAAGTATATAGTGCATTTTTACCGAGTCCACAGATGAGGAATGATCATTTTCCAGAAACG 1050
|||||||||||||||| |||||||||||| |||||| |||||| | ||||||||||||||
Sbjct 938 GAAGTATATAGTGCATCTTTACCGAGTCCTCAGATGGGGAATGGTTATTTTCCAGAAACG 997
Query 1051 CATATAGAGTATGATGCCATCATTTTTAATATAACTATAGTCGACGAAAATTTCAAGAGT 1110
|||||||||| ||||||| |||| ||||||||||||||||||||||||||||| ||||||
Sbjct 998 CATATAGAGTTTGATGCCGTCATCTTTAATATAACTATAGTCGACGAAAATTTTAAGAGT 1057
Query 1111 GTTGAGCGGATAAAGCATAGAGAGGCATTTTCGGATAACACTCGTGGTTATAAAGTATAT 1170
||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1058 GTTGAGCGGATAAAGAATAGAGAGGCATTTTCAGATAACACTCGTGGTTATAAAGTTTAT 1117
Query 1171 GATGATATCTAT-GTAGAATTACCGATAAGAAATGCCATATATTATGGAGGTCCAGGGAA 1229
|||||||| | | ||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1118 GATGATATAT-TCGTAGAATTACCGATAAGAAATGCCATATATTATGGGGGTCCAGGAAA 1176
Query 1230 TATCTAA 1236
|||||||
Sbjct 1177 TATCTAA 1183
> Ahg330287 jgi|Araly1|330287|fgenesh1_pm.C_scaffold_7002514
Length=1206
Score = 619 bits (335), Expect = 1e-176
Identities = 885/1143 (77%), Gaps = 67/1143 (6%)
Strand=Plus/Plus
Query 119 ATCGTTTTGTGGATGCTGAAATATTACAAACTTTCAGTGAT-TTTGAAATTGAAGAGCAA 177
||| |||||||||||| || | ||| |||| ||||| | | |||||||| ||| | |||
Sbjct 80 ATCATTTTGTGGATGCAGACACATTGCAAAATTTCACT-TTCTTTGAAATGGAAAAACAA 138
Query 178 CTTAAAGTCGTCAACAAACCTGCTACGAAAATT-ATCAAGACTATACATGGCGATTCATA 236
|||||||||||| || ||| |||| | ||||| ||||| |||| |||||| ||| ||||
Sbjct 139 CTTAAAGTCGTCGACGAACATGCTGC-TAAATTCATCAAAACTACACATGGAGATACATA 197
Query 237 TGATTGCGTAGATTTTTACAAACAACCCGCGTTTGACCATC-CATTGATGAAAAATCATT 295
||| || || ||||||||||||||||| ||||||||||||| || |||||||||||| |
Sbjct 198 TGAATGTGTGGATTTTTACAAACAACCAGCGTTTGACCATCTCA-CGATGAAAAATCACT 256
Query 296 TATTTCATTACAAAATGCGTCGGCCATCAT-CC-TTACGAACCTCAAG----AGCAAG-T 348
|| | || |||||||||| | | ||||| || ||| || ||||| || ||| |
Sbjct 257 TACTCCACTACAAAATGCACCATCTATCATCCCTTTA-TAA-TTCAAGAACAAGAAAGAT 314
Query 349 --A--ATAGAAAGTTTGGTTACTTGTGGAAAAATGGCATAGGGTGTCCAATTGGTACCGT 404
| ||| ||| ||||||| ||||||| ||||||| |||||||||| || |||||| |
Sbjct 315 AAATGATAAAAATTTTGGTTTCTTGTGGGAAAATGGTGTAGGGTGTCCCATGGGTACCAT 374
Query 405 ACCTATaaaaaaaaTTGCTAAAGACGAACTCTTGAAATTAAATTTGT-TCTCTAA-TAGT 462
||| ||| ||| | | | |||||| ||||||||| |||||||| || | || || | |
Sbjct 375 ACCCATACAAAGAGTCACCAAAGACAAACTCTTGAGATTAAATTCGTAT-TCCAACAAAT 433
Query 463 TATAACCCTCGA-GGTTCTTGGAACTTTACTTATAATCAATATAATGTTGATAATAATCA 521
| ||| || | | |||||||||||||| |||||||||||||||| ||| || | | ||
Sbjct 434 T-TAAGCCAC-ATGGTTCTTGGAACTTCACTTATAATCAATATATTGTCCATGGTGACCA 491
Query 522 ACATCATTTTGCAG-TGTCCCGTACCAAGA-A-GATAATAGGGAAAATTTACAATGGAGC 578
|||||||| ||| | || | || ||||||| | || || | ||||| || | ||||||
Sbjct 492 ACATCATTATGCGGTTG-CTCGAACCAAGAGAGGAGAA-A-AGAAAAGCTATACTGGAGC 548
Query 579 AACAAT-GATACTTTCTATAAATGATCCTAAAGTTAAACCTTTACAATATAGTTCTGCTC 637
| |||| | || ||||| || |||||||| |||||| | | || | |||||||||||
Sbjct 549 ATCAATGGTTA-TTTCTGTACATGATCCTGAAGTTAGATATCCGCAGTTTAGTTCTGCTC 607
Query 638 GTATGCACGTTCAAATTGGAGATGATTTTATTCAAGCAGGTTGGACTGTGA-ATCAAAAG 696
|||||||| |||| |||||||||||||||||||||| || |||||||| | ||| ||
Sbjct 608 GTATGCACTTTCAGATTGGAGATGATTTTATTCAAGTTGGATGGACTGT-AGATC-CGAG 665
Query 697 -TTATATTCTGACA-ACAAGACTCGAAGTTATGTGTATACGAAAATTGGTGAAAACCAAT 754
|||||| |||||| ||| || ||||||| ||| ||||||||| ||| |||| | |
Sbjct 666 TTTATATCCTGACATGCAA-ACACGAAGTTTTGTTTATACGAAAGCAGGTAAAAATGAGT 724
Query 755 GTTATAACAGCATGTGTCCAGCTGGGATTATAATGGTCAGTTCAGATATTGCTCTTGGTT 814
|||||||||||||||||||||||||||| || ||||| ||||||||||| ||||||||
Sbjct 725 GTTATAACAGCATGTGTCCAGCTGGGATCATTTTGGTCCGTTCAGATATTCCTCTTGGTG 784
Query 815 TGGATTT-AGGTCCTCCTTGTGTTCGTGGTTCAAGAACAATGGTCTCTTCTGA-AT-T-T 870
|| || |||||||||| |||||||||| || | ||||| | | || | ||| | | |
Sbjct 785 TGC-TTCGAGGTCCTCCTGGTGTTCGTGGCTCTA-AACAA-G-TATCATATGATACATAT 840
Query 871 GGTTTACTCAAGAATAAGGAAAATGGTGATTGGTGGCTCAAGTTAGGAGGACA-AGAAAT 929
|| ||||| ||| |||| | ||||||| ||||||||||| |||| |||||| | | ||||
Sbjct 841 GGATTACTAAAGGATAAAGCAAATGGTAATTGGTGGCTCGAGTTTGGAGGA-ATACAAAT 899
Query 930 TGGGTATTGGCCAGCaaaaaaaTTTAAAGAGACTTCGGCCAACAATATCGAATGGGGAGG 989
||||| |||||||||||| | |||| || ||| || || |||| |||||| ||||||||
Sbjct 900 TGGGTTTTGGCCAGCAAATATATTTCAACAGAGTTTGGGTAACAGTATCGAGTGGGGAGG 959
Query 990 AGAAGTATATAGTGCATTTTTACCGAGTCCACAG-ATGAGGAA-TGATCATTTTCCA--G 1045
||||||||||||||||| | | ||| |||| | | ||| |||| || | |||||||| |
Sbjct 960 AGAAGTATATAGTGCATCTCTGCCGGGTCCTC-GTATG-GGAAATGGTTATTTTCCATTG 1017
Query 1046 AAACGCATATAGAGTATGATGCCATCATTT-T-TAATATAACTATAGTCGACGAAAATTT 1103
| | || | | || ||||| | ||| | | ||||||||||| ||| || || |||||
Sbjct 1018 TTA-G-ATCCATATTACGATGC-A-CATGTATGTAATATAACTACAGTTGATGAGAATTT 1073
Query 1104 CAAGAGTGTT-G-AGCGGATAAAGCATAGAGAGGCATTTTCGGATAACACTCGTGGTTAT 1161
|| | || | | | || |||| ||| |||| |||| |||||||||| |||| |||||
Sbjct 1074 TAATATTGATAGGAT-GG-TAAAAAATATAGAGACATTCTCGGATAACAATCGTAGTTAT 1131
Query 1162 AAAGTATATGATGATATCTATGT-AGAATTACCGATAAGAAATGCCATATATTATGGAGG 1220
|||||| | || ||| | || | || ||||||| | || || |||||||| ||||||
Sbjct 1132 AAAGTAAACGAGGATTTAGAT-TCAGGATTACCGGTCGGACATATCATATATTTTGGAGG 1190
Query 1221 TCC 1223
|||
Sbjct 1191 TCC 1193
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46166852487
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5