BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24970.1
Length=613
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481350 jgi|Araly1|481350|fgenesh2_kg.4__410__AT2G24970.1 721 0.0
> Ahg481350 jgi|Araly1|481350|fgenesh2_kg.4__410__AT2G24970.1
Length=510
Score = 721 bits (390), Expect = 0.0
Identities = 460/494 (93%), Gaps = 3/494 (1%)
Strand=Plus/Plus
Query 56 AGATGACTCATAATCATCATCATCAAGCTGTTGACAATCTGCTAAATGTTTTCTCAAGAG 115
|||||| ||||||||||||||||||||||||||| |||||| ||||||||||| | ||||
Sbjct 19 AGATGAGTCATAATCATCATCATCAAGCTGTTGATAATCTGATAAATGTTTTCGCGAGAG 78
Query 116 CTTCTCATGATCTTACTGTTGTTCATTCCAAGCTCGACAAGGAGTTTCAGCAGATGTATC 175
||||||||||||||||| |||| |||||||||||||||||||||||||||||| | ||||
Sbjct 79 CTTCTCATGATCTTACTATTGTCCATTCCAAGCTCGACAAGGAGTTTCAGCAGCTTTATC 138
Query 176 CTGCTAATGCGAATCCGATGAAGCTGATTCAGCGAATCAAGAAGTTGCAGGAAGATGTGA 235
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 139 CTGATAATGCGAATCCGATGAAGCTGATTCAGAGAATCAAGAAGTTGCAGGAAGATGTGA 198
Query 236 CTCTTCTTAAACACCAATGCCTTGACCTATTGTCTGCTAAACAGGATTTGATTGATAAGG 295
||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 199 CTCTTCTTAAAGACCAATGTCTTGACCTATTGTCCGCTAAACAGGATTTGATTGATAAGG 258
Query 296 CACAGACTACACTTGTTGGAAACTGTAACCTTATTCAGAAAATGAATGCATCATTAGGAG 355
|||||||||||||||||||||| || |||||||||||||||||||||| ||| || ||||
Sbjct 259 CACAGACTACACTTGTTGGAAATTGCAACCTTATTCAGAAAATGAATGTATCTTTGGGAG 318
Query 356 AATCAACGAATGGCGATACCGATGATGCATTGGCTGATTTTAATCAGATCATTGACGAGT 415
||||||| ||||| || |||||||||||||||||||||||||||||||||| |||||||
Sbjct 319 AATCAACAAATGGTGAGGCCGATGATGCATTGGCTGATTTTAATCAGATCATCGACGAGT 378
Query 416 GGACAATGCAAGTTAGATCCAGAACAGTGGGAGAAACAGAGGACGCAGATAAAGAAGACA 475
|||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||
Sbjct 379 GGACAATGCAAGTTAGATCCAGAACAGTGGGAGAGATAGAGGAGGCAGATAAAGAAGACA 438
Query 476 TCAATAAGATGCTTTTCTCAGCTATTTGT-CATACCAATTGATGATATTCATTGTTCATG 534
|||||||||||||||||||||||||| || |||||||||||| ||| ||||| ||| |||
Sbjct 439 TCAATAAGATGCTTTTCTCAGCTATT-GTTCATACCAATTGAGGATGTTCAT-GTTTATG 496
Query 535 GTTATGTTAAGACC 548
|||||||| |||||
Sbjct 497 GTTATGTTCAGACC 510
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22416275196
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5