BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25000.1
Length=1209
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481352 jgi|Araly1|481352|fgenesh2_kg.4__412__AT2G25000.1 1432 0.0
> Ahg481352 jgi|Araly1|481352|fgenesh2_kg.4__412__AT2G25000.1
Length=1156
Score = 1432 bits (775), Expect = 0.0
Identities = 1032/1149 (90%), Gaps = 45/1149 (4%)
Strand=Plus/Plus
Query 72 ATTTATGGACTATGATCCCAAC-ACCAATCCGTTCGACCTTCATTTCTCCGGTAAACTTC 130
||||||||||||||||||| || ||||| || ||||||||||||||||||||||||||||
Sbjct 39 ATTTATGGACTATGATCCC-ACTACCAACCCTTTCGACCTTCATTTCTCCGGTAAACTTC 97
Query 131 CGAAAAGAGAAGTCTCGG-CTTCAGCTTCTAAAGTTGTAGAGAAGAAATGGTTAGTGAAA 189
|||||||||||||||||| | ||||||||| || |||||||||||||||||||||||||
Sbjct 98 CGAAAAGAGAAGTCTCGGAC-TCAGCTTCTGTAGATGTAGAGAAGAAATGGTTAGTGAAA 156
Query 190 GATGAGAAGAGAAATATGCTACAAGATGAAATAAACCGGGTTAATTCGGAGAACAAGAAG 249
|||||||||||| ||||| ||||||| || |||||||||||||| |||||||||| ||||
Sbjct 157 GATGAGAAGAGATATATGTTACAAGAGGAGATAAACCGGGTTAAATCGGAGAACATGAAG 216
Query 250 CTAACCGAAATGTTAGCAAGAGTCTGTGAGAAGTACTATGCTCTTAATAATCTTATGGAG 309
|||| |||||||||||||| |||||||||||||||||||||||||||||| ||| |||||
Sbjct 217 CTAAACGAAATGTTAGCAATAGTCTGTGAGAAGTACTATGCTCTTAATAAGCTTTTGGAG 276
Query 310 GAGTTGCAGAGTCGAAAGAGTCCTGAAAGTGTTAACTTTCAGAACAAACAGCTAACGGGG 369
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 277 GAGTTGCAGAGTCGAAAGAGTCCTGAAAATGTTAACTTTCAGAACAAACAGTTAACGGGG 336
Query 370 AAACGAAAACAAGAACTTGATGAGTTTGTTAGCTCCCCAATTGGACTCAGTCTCGGACCA 429
||||||||||||| | | ||| ||||||||||||||||||||||||| ||||||| |
Sbjct 337 AAACGAAAACAAGCGCGGGGTGACTTTGTTAGCTCCCCAATTGGACTCACTCTCGGAACT 396
Query 430 ATCGAGAACATCACCAACGATAAAGCGACGGTTTCAACCGCTTACTTTGCTGCTGAGAAG 489
|||||||| ||||| | |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 397 ATCGAGAATATCACTACCGATAAAGCGACGGTTTCAACCGCCTACTTTGCTGCTGAGAAG 456
Query 490 TCTGACACAAGCTTGACTGTGAAAGATGGATATCAATGGAGGAAATACGGGCAAAAGATT 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 457 TCTGACACAAGCTTGACTGTGAAAGATGGATATCAATGGAGGAAATACGGGCAAAAGATT 516
Query 550 ACGAGAGATAATCCATCTCCTAGAGCTTACTTCAGATGCTCGTTTTCACCGTCTTGTCTA 609
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 517 ACGAGAGATAATCCATCTCCTAGAGCTTACTTCAGATGTTCGTTTTCACCGTCTTGTCTA 576
Query 610 GTCAAGAAGAAGGTGCAACGAAGTGCAGAAGATCCATCTTTCTTGGTAGCCACTTACGAA 669
|||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 577 GTCAAGAAGAAGGTTCAACGAAGCGCAGAAGATCCATCTTTCTTGGTAGCCACATACGAA 636
Query 670 GGGACACATAACCACACCGGACCACATGCAAGTGTGTCCAGGACAGTGAAACTTGATCTA 729
|||| ||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||
Sbjct 637 GGGAGACATAACCACACCGGCCCACATGCAAGTGCGTCGAGGACAGTGAAACTTGATCTA 696
Query 730 GTTCAAGGTGGGCTTGAACCAGTTGAGGAAAAGAAAGAGAGAGGGACGATTCAAGAGGTT 789
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 697 GTTCAAGGTGGTCTTGAACCAGTTGAGGAAAAGAAAGAGAGAGGAACGATTCAAGAGTTT 756
Query 790 TTGGTGCAACAAATGGCTTCTTCGTTGACCAAAGATCCTAAGTTCACTGCAGCTCTTGCG 849
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 757 TTGGTGCAACAAATGGCCTCTTCGTTGACCAAAGATCCTAAGTTCACTGCAGCTCTTGCG 816
Query 850 ACTGCTATTTCCGGGAGATTGATAGAGCATTCAAGAACATGAAAGTTCTCTAGAACATGT 909
||||||||||||||||||| ||||||||||||||||||||||| |||| | ||||||||
Sbjct 817 GCTGCTATTTCCGGGAGATTCATAGAGCATTCAAGAACATGAAACTTCTGTTGAACATGT 876
Query 910 ATATTTCTGTTTTGTTCTATTTTGTTGCTCATTCCTAGTAAAAAGGTAAAGATTTGTTTG 969
|||||| |||||||||||||| | |||||||| |||||||||| | | |
Sbjct 877 ATATTTTTGTTTTGTTCTATTCTATTGCTCATCCCTAGTAAAA-G--A----T------- 922
Query 970 ATCTTGATTAGGAGGCATAGATGTCAATTTTAATGTGTGTGTATATAATTACATCAAATC 1029
|||||||||| |||||||| ||||| |||||||||| | ||| ||||||||||||||
Sbjct 923 --CTTGATTAGGTGGCATAGACGTCAAGTTTAATGTGTAT--ATA-AATTACATCAAATC 977
Query 1030 TAAGTATCCAAAAAGGGTCACCCCCATTTTATCTT-ATGTTGAAAG-AGTTTTGTTATAG 1087
||||||||||||||| ||| | ||||| |||| |||| |||| |||||||||||||
Sbjct 978 AAAGTATCCAAAAAGGACCACTGCGATTTT-TCTTTATGTC-AAAGGAGTTTTGTTATAG 1035
Query 1088 CTCGG-TGTAAGTATGGTAGAT--TGACGCTGCTTCGACAGTTTATGT-AT--C--TTCC 1139
| ||| | |||| |||||||| | | ||||||||||||||| |||| || | || |
Sbjct 1036 CCCGGCT-TAAGAATGGTAGACGCT-A-GCTGCTTCGACAGTT-ATGTTATGTCACTTTC 1091
Query 1140 AATGTTATCTTGTTCAGTTGTTTGTATTAACTTCCATTAGAGAAGAATGT--GATGCCAT 1197
||| || |||||| | | || ||| |||||||||||||||||||||| | ||||||||
Sbjct 1092 AATTTTTTCTTGT--A-T-GTATGTGTTAACTTCCATTAGAGAAGAATATATGATGCCAT 1147
Query 1198 TACAGACAT 1206
|| ||||||
Sbjct 1148 TAAAGACAT 1156
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45137533728
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5