BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G25010.1

Length=1806
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg891319 jgi|Araly1|891319|Al_scaffold_0007_3305                    396    3e-109


> Ahg891319 jgi|Araly1|891319|Al_scaffold_0007_3305
Length=360

 Score =  396 bits (214),  Expect = 3e-109
 Identities = 227/233 (97%), Gaps = 2/233 (1%)
 Strand=Plus/Plus

Query  449  ATGACTATAACCTTAGA-CGAAGTTGCTTTAGTACTTGGACTTGAGATTGATGGAGATCC  507
            ||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGACTATAACTTTAGATC-AAGTTGCTTTAGTACTTGGACTTGAGATTGATGGAGATCC  59

Query  508  CATTGTTGGTTCTAAAGTTGGTGATGAGGTTGCTATGGATATGTGTGGTAGACTTTTAGG  567
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  60   TATTGTTGGTTCTAAAGTTGGTGATGAGGTTGCTATGGATATGTGTGGTAGACTTTTAGG  119

Query  568  GAAGTTACCATCTGCTGCTAATAAAGAAGTTAATTGTTCTAGGGTTAAGCTTAATTGGCT  627
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  120  GAAGTTACCTTCTGCTGCTAATAAAGAAGTTAATTGTTCTAGGGTTAAGCTTAATTGGCT  179

Query  628  TAAAAGAACTTTCTCTGAGTGTCCTGAAGATGCTTCTTTCGATGTTGTTAAAT  680
            |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  180  TAAAAGAACTTTCTCTGAGTGTCCTGAAGATGCTTCTTTCCATGTTGTTAAAT  232



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 67800636100


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5