BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G25010.1 Length=1806 Score E Sequences producing significant alignments: (Bits) Value Ahg891319 jgi|Araly1|891319|Al_scaffold_0007_3305 396 3e-109 > Ahg891319 jgi|Araly1|891319|Al_scaffold_0007_3305 Length=360 Score = 396 bits (214), Expect = 3e-109 Identities = 227/233 (97%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 449 ATGACTATAACCTTAGA-CGAAGTTGCTTTAGTACTTGGACTTGAGATTGATGGAGATCC 507 ||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGACTATAACTTTAGATC-AAGTTGCTTTAGTACTTGGACTTGAGATTGATGGAGATCC 59 Query 508 CATTGTTGGTTCTAAAGTTGGTGATGAGGTTGCTATGGATATGTGTGGTAGACTTTTAGG 567 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 60 TATTGTTGGTTCTAAAGTTGGTGATGAGGTTGCTATGGATATGTGTGGTAGACTTTTAGG 119 Query 568 GAAGTTACCATCTGCTGCTAATAAAGAAGTTAATTGTTCTAGGGTTAAGCTTAATTGGCT 627 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 GAAGTTACCTTCTGCTGCTAATAAAGAAGTTAATTGTTCTAGGGTTAAGCTTAATTGGCT 179 Query 628 TAAAAGAACTTTCTCTGAGTGTCCTGAAGATGCTTCTTTCGATGTTGTTAAAT 680 |||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 180 TAAAAGAACTTTCTCTGAGTGTCCTGAAGATGCTTCTTTCCATGTTGTTAAAT 232 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67800636100 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5