BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25020.1
Length=3162
Score E
Sequences producing significant alignments: (Bits) Value
Ahg344097 jgi|Araly1|344097|fgenesh1_pg.C_scaffold_4000439 2259 0.0
> Ahg344097 jgi|Araly1|344097|fgenesh1_pg.C_scaffold_4000439
Length=2361
Score = 2259 bits (1223), Expect = 0.0
Identities = 1490/1616 (92%), Gaps = 29/1616 (2%)
Strand=Plus/Plus
Query 1568 AGGATCATCCGTTGCCACCCGGATTCGGATCAAATATCTGCAAAGATATCAAGATGAGAG 1627
|||||||||| ||||||||||||||||| || ||||||||||||||||||||| ||||||
Sbjct 530 AGGATCATCCATTGCCACCCGGATTCGGGTCGAATATCTGCAAAGATATCAAGTTGAGAG 589
Query 1628 TTCCAAAAGATGGATTTTCAGGAACTGGCATTTTCCCACATCCTTTGCAT-AAAATGATT 1686
|||| |||||||| |||| |||||||||||||||||| |||||||||| | ||| | |||
Sbjct 590 TTCCTAAAGATGGGTTTTTAGGAACTGGCATTTTCCCTCATCCTTTGCTTGAAAGT-ATT 648
Query 1687 ATGAAACCACATCACTTCGAGATATTCAATTTTCTCTGCAAGAACTTGGTTGTGGAAAAC 1746
|||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 649 ATGAAACCACATCACTACGAAATACTCAATTTTCTCTGCAAGAACTTGGTTGTGGAAAAC 708
Query 1747 TCAAATGGATGCATCATAGCTCAAACTCCTTTATCTGAAAAGACCTTCTTGATGATCAGT 1806
||||| || ||||||||||| |||| |||||||||||||||||||||||||||||||| |
Sbjct 709 TCAAACGGCTGCATCATAGCACAAATTCCTTTATCTGAAAAGACCTTCTTGATGATCAAT 768
Query 1807 TTCATCTATGGTTACTTAGAAAAGCACCCAAATAGTAAACCTCTATTTGTGCTTCCTAAA 1866
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 TTCATATATGGTTACTTAGAAAAGCACCCAAATAGTAAACCTCTATTTGTGCTTCCTAAG 828
Query 1867 TGGGTGTTGAACTTTTGGAAAACAA-AGTTTGGTGAATTGAAGGTCAATGACCTTGTGTT 1925
||| || |||| |||||||||| || | |||||||||||||||||||||||||| |||||
Sbjct 829 TGGATGCTGAATTTTTGGAAAA-AAGATTTTGGTGAATTGAAGGTCAATGACCTCGTGTT 887
Query 1926 GCTAGACTTCTACTCGGCAAAGGCGA-GTACCCGATCTCAGCAGTTAGAGGTTCTAAACC 1984
|||||||||||||||||| ||||| | |||||||| |||||||||||| |||||||| |
Sbjct 888 GCTAGACTTCTACTCGGCGAAGGC-ACATACCCGATATCAGCAGTTAGAAGTTCTAAAGC 946
Query 1985 GATGGATCA-AAACCCGGAGTATTATCTTCTTAGGCGCCAAACAATTCTCCAACATAATA 2043
|||||||| ||| |||||||||||||||||||||| |||| || |||||||||||| ||
Sbjct 947 AATGGATCACAAA-CCGGAGTATTATCTTCTTAGGCACCAAGCAGTTCTCCAACATAGTA 1005
Query 2044 TCTGATAACAGTGGTGCAGAAGCTTCAGATTCTTGTAGGGATATACTCTTAAACATTCCT 2103
||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1006 TCTGATAACAGTGGTACAGAAGCTTCAGATTCTTGTAGGGAAATTCTCTTAAACATTCCT 1065
Query 2104 TCGGTGGTTGTTTTCGACAGAGGAACTGATCCGAGGAACGAGATGATGAGCTTTCTTAAG 2163
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1066 TCACTGGTTGTTTTCGACAGAGGAACTGATCCGAGGAACGAGATGATGAGCTTTCTTAAG 1125
Query 2164 GTTGTTGCTCGTATCAAGACGCCAC-ATAAGGTTCTACTCACTGGCTCACTATACCAAAA 2222
| ||||||||||||||||||||||| | |||||| ||||||||||| |||||||||||||
Sbjct 1126 GCTGTTGCTCGTATCAAGACGCCACGA-AAGGTTTTACTCACTGGCACACTATACCAAAA 1184
Query 2223 CAACATTAAGGAGGTTTTCAACATTCTTGATGTTGTTTTCCCTGAGTTTCTGAAGCATAA 2282
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1185 CAACATTAAGGAGGTTTTCAACATTCTTGATGTTGCTTTCCCTGAGTTTCTGAAGCATAA 1244
Query 2283 CCGAATTGGTAAAAATATCAGAAAATTCCTT-AATGTTGAAGCTGA--T-G--G-ACCTT 2335
|| |||||||||||||||||| |||||| || |||||||||||||| | | | |||||
Sbjct 1245 CCAAATTGGTAAAAATATCAGCAAATTC-TTGAATGTTGAAGCTGACGTTGATGGACCTT 1303
Query 2336 CAACGAATTTGAAGATGCCCTTGTTTGATAAATTGGAAGAAGCTTTGCTTAGTCAAGATT 2395
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 1304 CAACGAATTTGAAGATGCCCCTATTTGATAAATTGGAAGAAGCTTTGCTTAGTCAAGATT 1363
Query 2396 CTGATCATGGAGACAAGATTAGTTACTTAACCGAACTAAGGATGTTGACAAACAAGTTTA 2455
|||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1364 CTGATCATGGGGACAAGATTGGTTACTTAACCGAACTAAGGATGTTGACAAACAAGGTTA 1423
Query 2456 TTTACAATCACAAAGAAGAGTTTCTCCTTGAGGTCCCGGGATTGATGGACTTCACGGTGG 2515
| |||||| |||||| ||||| ||||||||| ||||||||||| |||||||||||||||
Sbjct 1424 TCTACAATTACAAAGGAGAGTGTCTCCTTGATCTCCCGGGATTGCTGGACTTCACGGTGG 1483
Query 2516 TCTTAAAACCGACATTAAGCCAAAAGTCAGCATGGGAGATTGAATGAAAGTCCAAAGGGA 2575
||||||| |||||||||||||||||||||| |||||||| |||| |||| ||||||||||
Sbjct 1484 TCTTAAACCCGACATTAAGCCAAAAGTCAGAATGGGAGACTGAAAGAAACTCCAAAGGGA 1543
Query 2576 AAGGTTTCAAAACGTATTCTACCTTGAGCGGAATCA-TGCTTCACCCACAGCTATGTGCT 2634
|||||||||||||||| ||||||||||||||||||| | |||||||||| |||| |||||
Sbjct 1544 AAGGTTTCAAAACGTACTCTACCTTGAGCGGAATCACT-CTTCACCCACTGCTACGTGCT 1602
Query 2635 TTCTCAGACCGGGCAAAAGGTCTTCCTGCCCCCAACGAGGATGAGATGGATGAGATCATC 2694
|||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1603 TTCTCAAACCGGGCAAAAGGTCTTCCTGCCCCTAACGAGGATGAGATGGATGAGATTATC 1662
Query 2695 AAAGAAATTGACGTAACAGATGGCGTAAAAACAAAGTTCTTCATGGGTTTAGTAAAGTTA 2754
|||||||| ||||||||||||||||| |||||||| ||||||||||||||||| ||||||
Sbjct 1663 AAAGAAATCGACGTAACAGATGGCGTTAAAACAAACTTCTTCATGGGTTTAGTGAAGTTA 1722
Query 2755 TGCGGTTACACGAATGAGAAGATTCTTGTAGTGAGCCAATGTGTCATCCCATTGATATTC 2814
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1723 TGCGATTACACGAATGAGAAGATTCTTGTAGTGAGCCAATATGTCATCCCATTGATATTC 1782
Query 2815 CTCCAAAGACTAGTGGCTAAGATTAAAGGTTGGAAAGATGGCAAAGAAACCTTCATGATC 2874
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1783 CTCCAAAGACTCGTGGCTAAGATTAAAGGTTGGAAAGATGGCAAAGAAACATTCATGATT 1842
Query 2875 AAAGGTGATACAAGTCATTCTGCTC-A----T--CAATTAATCAATTTAACAACTC-ACA 2926
|||||||||||||||| |||||||| | | | ||||||||||| |||||||| | |
Sbjct 1843 AAAGGTGATACAAGTCTTTCTGCTCGAGAAATGTCGATTAATCAATTCAACAACTCGA-A 1901
Query 2927 TGATGCAAAAATCTTCTTTGCATCCATCAAAGCGTGTAATGAGCAGATAGCTCTTCCGGG 2986
|||||| ||||||||||||| |||||| |||||||||||||||||||| | |||| ||||
Sbjct 1902 TGATGCGAAAATCTTCTTTGTATCCATTAAAGCGTGTAATGAGCAGATCGGTCTTACGGG 1961
Query 2987 TGCAACAAGGGTTTTAATGCTTGACATCATCGCAAACCCTTGTATGGCTCGACAAGCCAT 3046
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1962 TGCAACAAGGGTTTTAATGCTCGACATCATCGCCAACCCTTGTATGGCTCGACAAGCCAT 2021
Query 3047 AGAGTTGGCTTATCATCCAGGACAACAAAACAAAGTTTATTCCTATAGGCTTGTGGCTGC 3106
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2022 AGAGCTGGCTTATCATCCAGGACAACAAAACAAAGTTTATTCCTATAGGCTGGTGGCTGC 2081
Query 3107 GGATACATCAGAAGAAGGCGAAGACATAATAACAGCTAAAAAGGAGATAATTTCTG 3162
|||||||||||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct 2082 TGATACATCAGAAGAAGATGAAGAAATAATCGCAGCTAAAAAGGAGATAATTTCTG 2137
Score = 344 bits (186), Expect = 2e-93
Identities = 241/268 (90%), Gaps = 2/268 (1%)
Strand=Plus/Plus
Query 290 ATCAAAACGACGATAAAAGGAAAAAGGTCGTGGCACTAGAAAATCAAGAAGCTGGGGGAA 349
|||||||||| |||||||| |||||||| || ||||||||| ||||||||| | ||||
Sbjct 41 ATCAAAACGATGATAAAAGAAAAAAGGTTATGACACTAGAAACTCAAGAAGCCAGTGGAA 100
Query 350 GTTGTATCGATGGAAATGTGGCTCATTGGTTTTCGAAAACTAAGTTCAATGGGTTGGTGA 409
||||| ||||| ||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 101 GTTGTGTCGATCAAAATGTGGCTCATTGGTTTTCGAAAACGGAGTTCAATGGGTTAATGG 160
Query 410 ACGTACCAATTGTGTATTTGGCCTTGGAAGAAAATATAGTTAAGAATGATCTTAC-ATTG 468
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||| || |
Sbjct 161 ACGTACCAATTGTGTATTTGGCCTCGGAAGAAAATATAGTTAAGAATGATCATACAATCG 220
Query 469 AGAAGCTCACTTAAACATGTCATCTTTGGCGGTAGCAGCGGAGGCAGTAACAGTGGTAAA 528
|||||||||||||| |||||| | |||||||||||||| ||||||||||||||||||||
Sbjct 221 -GAAGCTCACTTAAAGATGTCAACATTGGCGGTAGCAGCAGAGGCAGTAACAGTGGTAAA 279
Query 529 GGGCTAGCCAAGGATTTGTACTTAGATG 556
||||||||||| ||||||||||||||||
Sbjct 280 GGGCTAGCCAACGATTTGTACTTAGATG 307
Score = 183 bits (99), Expect = 5e-45
Identities = 121/132 (92%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 667 GGAAACGAATTGGTTGAAGTTCATGTGAGAAGTGATAGAGAAATCAATATGATGAAAGAC 726
||||| |||||||| | ||||||| |||||||||||| ||||||||||| ||||||||||
Sbjct 307 GGAAATGAATTGGTCGGAGTTCATATGAGAAGTGATAAAGAAATCAATACGATGAAAGAC 366
Query 727 AAAGGAAAAGCAATATTCGACCTTAACGAAGCTGTTTGGCCAAGAGATGAAGCAGTATCA 786
||||||||||||||||||||||||||| ||||| ||||||||| ||||||| |||| |||
Sbjct 367 AAAGGAAAAGCAATATTCGACCTTAACAAAGCTATTTGGCCAAAAGATGAACCAGTTTCA 426
Query 787 AACACATTTGAG 798
||||||||||||
Sbjct 427 AACACATTTGAG 438
Score = 156 bits (84), Expect = 1e-36
Identities = 95/100 (95%), Gaps = 1/100 (1%)
Strand=Plus/Plus
Query 879 AGAAAAGTGGAGCAACACTGACAAATTGTGAGCATTCTTGGATATGGAAGCAAGATCTTG 938
|||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 437 AGAAAAGTGGAGCATCACTGAAAAATTGTGAGCATTCTTGGATATGGAAGCAAGGTCTTG 496
Query 939 GTCATACTTGTTGGATATGTGGTATCATTAACAAGG-TCA 977
||||||||||||||||||||||||||||| |||||| |||
Sbjct 497 GTCATACTTGTTGGATATGTGGTATCATTGACAAGGATCA 536
Score = 63.9 bits (34), Expect = 7e-09
Identities = 34/34 (100%), Gaps = 0/34 (0%)
Strand=Plus/Plus
Query 1 ATGGATGCAAAGAGGAAATTATCACAAGAGAAAG 34
||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGATGCAAAGAGGAAATTATCACAAGAGAAAG 34
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 119451008320
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5