BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25030.1
Length=1788
Score E
Sequences producing significant alignments: (Bits) Value
Ahg344098 jgi|Araly1|344098|fgenesh1_pg.C_scaffold_4000440 689 0.0
Ahg899931 jgi|Araly1|899931|Al_scaffold_0004_581 590 1e-167
Ahg932623 jgi|Araly1|932623|scaffold_400611.1 579 3e-164
Ahg932624 jgi|Araly1|932624|scaffold_400612.1 283 3e-75
Ahg944690 jgi|Araly1|944690|scaffold_700919.1 52.8 8e-06
> Ahg344098 jgi|Araly1|344098|fgenesh1_pg.C_scaffold_4000440
Length=2382
Score = 689 bits (373), Expect = 0.0
Identities = 503/566 (89%), Gaps = 7/566 (1%)
Strand=Plus/Plus
Query 6 CTTAACATAGCGGATATAGTAAGCAAGT-GACCTATATTCCACTGTCCAATCTTCAGCAA 64
|||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||
Sbjct 1345 CTTAACATAGCGGATATAGTAAGCAAGTCGACCGGTATTCCACTGTCCAATCTTCGGCAG 1404
Query 65 TCAGAGAGAGAAAAGCTAGTCATGTTGGAACAAATACTCCACGAGAGAATAATTGCTCAA 124
||||||| ||||||||| ||||| ||||| ||||| |||||| ||||| | |||| ||||
Sbjct 1405 TCAGAGAAAGAAAAGCTTGTCATATTGGAGCAAATGCTCCACAAGAGAGTGATTGGTCAA 1464
Query 125 GACTTGGATGTAGAGTCAGTTGCCGATGCTATCCGTTGTTCAAAGGCTGGTATTTCAGAT 184
||||||| |||||| |||||||| |||||||||||||||||||| |||||| ||||||||
Sbjct 1465 GACTTGGCTGTAGAATCAGTTGCAGATGCTATCCGTTGTTCAAAAGCTGGTCTTTCAGAT 1524
Query 185 CCTAACCGCCTTATAGCTAGTTTTATGTTCATGGG-ACAACCAAGTGTTGGTAAGACCGA 243
|||||||||| |||||| ||||||||||||||||| ||| || ||||||| || |||||
Sbjct 1525 CCTAACCGCCCTATAGCCAGTTTTATGTTCATGGGTCCAA-CAGGTGTTGGGAAAACCGA 1583
Query 244 GCTTGCCAAGGCACTAGCTGGATACCTTTTCAACAATGAAAACACAATAGTGAGGATAGA 303
|||||| || || |||||||||||||||||||||||||||||| | ||||||||||| ||
Sbjct 1584 GCTTGCAAAAGCTCTAGCTGGATACCTTTTCAACAATGAAAACGCGATAGTGAGGATCGA 1643
Query 304 TATGAGTTAGCACATGGAAAAA-ACGTTAGTCTCACAGCTCGTTGGTGCATCACCTGGCT 362
||||||| || ||||||||||| | || |||||||| ||||||||||||| |||||||||
Sbjct 1644 TATGAGTGAGTACATGGAAAAACA-GTCAGTCTCACGGCTCGTTGGTGCAGCACCTGGCT 1702
Query 363 ATGTTGGTTACGGAGACGGTGGGAAATTAACTGAAGTTGTTCGAAGGAGACCTTATTCAG 422
|||| ||||||| ||| || ||| |||||||||||| |||||| ||||||||||||||||
Sbjct 1703 ATGTCGGTTACGAAGAAGGAGGGCAATTAACTGAAGCTGTTCGGAGGAGACCTTATTCAG 1762
Query 423 TGGTTCAGTTTGATGAGATCGAGAAACCGCACCTTGATGTCTTCAGTATCTTGCTTCAAC 482
|||||| |||||||||||| |||||| | |||| ||||||||| | ||||||||| ||||
Sbjct 1763 TGGTTCTGTTTGATGAGATAGAGAAAGCTCACCATGATGTCTTTAATATCTTGCTACAAC 1822
Query 483 TACTAGACGATGGAAGAATAACTA-ATTCTCATGGTAGGACACTAAGTTTCACAAACTGT 541
||||||| |||||||||||||| | |||||||||| |||||| ||||||||||||||||
Sbjct 1823 TACTAGATGATGGAAGAATAAC-AGATTCTCATGGGAGGACAGTAAGTTTCACAAACTGC 1881
Query 542 TTTGTAATAATTACATCTAATATAGG 567
||||||||||| || |||||||||||
Sbjct 1882 TTTGTAATAATGACGTCTAATATAGG 1907
Score = 291 bits (157), Expect = 2e-77
Identities = 235/271 (87%), Gaps = 11/271 (4%)
Strand=Plus/Plus
Query 1260 TGCAGATGAGACAAGTGAAGAAGAGGTTGGAACAGAATAAAATAA-ATCTTGAGTACACA 1318
||||||||| || ||||||||| ||||||||||| || || |||| | ||||||||||||
Sbjct 2093 TGCAGATGATACGAGTGAAGAATAGGTTGGAACATAAGAAGATAACA-CTTGAGTACACA 2151
Query 1319 AAAGAAGCTGTGGATCTCCTTG--C-TCAGCTTGGCTTTGACCCCAACAATGGGGCAAGA 1375
|||||||| |||||||| |||| | ||||||||| ||||| ||||||||||||||||||
Sbjct 2152 AAAGAAGCAGTGGATCTACTTGCTCATCAGCTTGGGTTTGATCCCAACAATGGGGCAAGA 2211
Query 1376 CCGGTGAAGCAAA-TGATTGAGAAGCTTGTGAAGAAGGAGATCACCCTCAAAGTTTTGAA 1434
|| |||||| | | ||||||||||| ||||||||||||||||| || |||||||||||||
Sbjct 2212 CCAGTGAAG-AGAGTGATTGAGAAGATTGTGAAGAAGGAGATCGCCTTCAAAGTTTTGAA 2270
Query 1435 AGGAGATTTTGCAGAGG-ATGGCACTATTCTTATCGATGCTGACCAGCCTAAC-AACAAA 1492
||||||||||||||||| | | ||| |||||| | || | ||||||| | || ||||||
Sbjct 2271 AGGAGATTTTGCAGAGGGA-GACACCATTCTTCTTGAAGTTGACCAGAC-AAGTAACAAA 2328
Query 1493 CTGGTCATCAAGAAGATGGAGAATAATGCTC 1523
||||||||||||||| | |||||||||||||
Sbjct 2329 CTGGTCATCAAGAAGCTCGAGAATAATGCTC 2359
Score = 244 bits (132), Expect = 1e-63
Identities = 178/200 (89%), Gaps = 4/200 (2%)
Strand=Plus/Plus
Query 798 AATATAGGATCTCTACATATACTTGAGACTATTCGCAACAATGAAGATA-TCAAAGAAGC 856
||||||||||||| ||| |||||||| || || |||||||||||||||| | |||||||
Sbjct 1900 AATATAGGATCTCAACACATACTTGAAACGATCCGCAACAATGAAGATAGT-AAAGAAGA 1958
Query 857 ATTTTATGAAATGATGAAGCAACAAGTTGTGGAGTTAGCAAGAAAAACTTTTAGGCCAAA 916
| ||||||| ||||||||||||||||||||||||||||||||||||||||| | |||| |
Sbjct 1959 AGTTTATGAGATGATGAAGCAACAAGTTGTGGAGTTAGCAAGAAAAACTTTCAAGCCAGA 2018
Query 917 GTTCATGAATAGAATTGATGAATACATAGTTTCTC-AGCCTTTAAATTCAAGCGAAATAT 975
||||||||| |||||||||||||||||||||| || ||||||| ||||||| ||| |||
Sbjct 2019 GTTCATGAACAGAATTGATGAATACATAGTTT-TCCAGCCTTTGGATTCAAGAGAACTAT 2077
Query 976 CCAAAATCGTGGAGTTACAG 995
| |||||||||||||| |||
Sbjct 2078 CGAAAATCGTGGAGTTGCAG 2097
> Ahg899931 jgi|Araly1|899931|Al_scaffold_0004_581
Length=2919
Score = 590 bits (319), Expect = 1e-167
Identities = 487/568 (86%), Gaps = 11/568 (2%)
Strand=Plus/Plus
Query 6 CTTAACATAGCGGATATAGTAAGCAAGT-GACCT-ATATTCCACTGTCCAATCTTCAGCA 63
||| ||||||| || ||||||||||||| || || ||||||||| || |||||||||||
Sbjct 1879 CTTGACATAGCAGAAATAGTAAGCAAGTGGA-CTGGTATTCCACTATCTAATCTTCAGCA 1937
Query 64 ATCAGAGAGAGAAAAGCTAGTCATGTTGGAACAAATACTCCACGAGAGAATAATTGCTCA 123
|||||||||||||||||||||||||||||||||| | |||||| | ||| | ||| |||
Sbjct 1938 ATCAGAGAGAGAAAAGCTAGTCATGTTGGAACAAGTTCTCCACCATAGAGTTGTTGGTCA 1997
Query 124 AGACTTGGATGT-AGAGTCAGTTGCCGATGCTATCCGTTGTTCAAAGGCTGGTATTTCAG 182
|||| ||| ||| | | ||||| || ||||||||||| |||||| |||||| |||| |
Sbjct 1998 AGACATGGCTGTGAAA-TCAGTAGCAGATGCTATCCGACGTTCAAGGGCTGGCCTTTCTG 2056
Query 183 ATCCTAACCGCCTTATAGCTAGTTTTATGTTCATGGGAC-AACCAAGTGTTGGTAAGACC 241
|||||||||||| ||||||||||| ||||||||||| | ||| | ||||||||||||||
Sbjct 2057 ATCCTAACCGCCCAATAGCTAGTTTCATGTTCATGGGTCCAAC-AGGTGTTGGTAAGACC 2115
Query 242 GAGCTTGCCAAGGCACTAGCTGGATACCTTTTCAACAATGAAAACACAATAGTGAGGATA 301
|||||||||||||| ||||| ||||||||||| |||| |||||| |||||||||||||
Sbjct 2116 GAGCTTGCCAAGGCTCTAGCGGGATACCTTTTTAACACTGAAAATGCAATAGTGAGGATC 2175
Query 302 GATATGAGTTAGCACATGGAAAAAA-CGTTAGTCTCACAGCTCGTTGGTGCATCACCTGG 360
||||||||| || | ||||||||| | | |||||| | ||| ||||||||| |||| ||
Sbjct 2176 GATATGAGTGAGTATATGGAAAAATTC-TCAGTCTCGCGGCTTGTTGGTGCACCACCGGG 2234
Query 361 CTATGTTGGTTACGGAGACGGTGGGAAATTAACTGAAGTTGTTCGAAGGAGACCTTATTC 420
|||||||||||| | ||| |||||| ||||||||||||||||||| ||||||||||| ||
Sbjct 2235 CTATGTTGGTTATGAAGAAGGTGGGCAATTAACTGAAGTTGTTCGGAGGAGACCTTACTC 2294
Query 421 AGTGGTTCAGTTTGATGAGATCGAGAAA-CCGCACCTTGATGTCTTCAGTATCTTGCTTC 479
||||||| ||||||||||||||||||| || |||| ||||||||| | ||||||||| |
Sbjct 2295 GGTGGTTCTGTTTGATGAGATCGAGAAAGCC-CACCCTGATGTCTTTAATATCTTGCTAC 2353
Query 480 AACTACTAGACGATGGAAGAATAACTAATTCTCATGGTAGGACACTAAGTTTCACAAACT 539
|||| ||||||||||||||||||||| ||||||| || |||||| ||||||||| |||||
Sbjct 2354 AACTGCTAGACGATGGAAGAATAACTGATTCTCAAGGGAGGACAGTAAGTTTCAAAAACT 2413
Query 540 GTTTTGTAATAATTACATCTAATATAGG 567
|| ||||||| || || || ||||||||
Sbjct 2414 GTGTTGTAATTATGACGTCAAATATAGG 2441
> Ahg932623 jgi|Araly1|932623|scaffold_400611.1
Length=2484
Score = 579 bits (313), Expect = 3e-164
Identities = 475/553 (86%), Gaps = 11/553 (2%)
Strand=Plus/Plus
Query 21 ATAGTAAGCAAG-TGACCT-ATATTCCACTGTCCAATCTTCAGCAATCAGAGAGAGAAAA 78
|||||||||||| || || |||||||| || ||||||||| ||||||||||||||||
Sbjct 1451 ATAGTAAGCAAGAAGA-CTGGTATTCCACAATCAAATCTTCAGAAATCAGAGAGAGAAAA 1509
Query 79 GCTAGTCATGTTGGAACAAATACTCCACGAGAGAATAATTGCTCAAGACTTGGATGTAGA 138
||| ||||||||||| ||| | ||||| |||||||| ||| ||||||| ||| ||||||
Sbjct 1510 GCTGGTCATGTTGGATCAAGTGCTCCATGAGAGAATTGTTGGTCAAGACATGGCTGTAGA 1569
Query 139 GTCAGTTGCCGATGCTATCCGTTGTTCAAAGGCTGGTATTTCAGATCCTAACCG-CCTTA 197
| |||||| ||||||||||||||||| ||||||||| |||| ||||||||||| || ||
Sbjct 1570 ATTAGTTGCAGATGCTATCCGTTGTTCGAAGGCTGGTCTTTCTGATCCTAACCGACC-TA 1628
Query 198 TAGCTAGTTTTATGTTCATGGG-ACAACCAAGTGTTGGTAAGACCGAGCTTGCCAAGGCA 256
|||| ||||||||||||||||| ||| || |||||||||||||||| |||||||||||
Sbjct 1629 TAGCCAGTTTTATGTTCATGGGTCCAA-CAGGTGTTGGTAAGACCGAACTTGCCAAGGCT 1687
Query 257 CTAGCTGGATACCTTTTCAACAATGAAAACACAATAGTGAGGATAGATATGAGTTAGCAC 316
||||||||||||||||||||||||||||| ||||||||||||| ||||||||| || ||
Sbjct 1688 CTAGCTGGATACCTTTTCAACAATGAAAATGCAATAGTGAGGATTGATATGAGTGAGTAC 1747
Query 317 ATGGAAAAAACGT-TAG-TCTCACAGCTCGTTGGTGCATCACCTGGCTATGTTGGTTACG 374
||||||||| || | | || ||| |||| |||| |||| ||||||||||| || ||
Sbjct 1748 ATGGAAAAA--GTCTCGGTCACACGGCTCATTGGCGCATGTCCTGGCTATGTCGGGTATA 1805
Query 375 GAGACGGTGGGAAATTAACTGAAGTTGTTCGAAGGAGACCTTATTCAGTGGTTCAGTTTG 434
| || |||||| || ||||||||| ||| | |||||||||||||||||||||| |||||
Sbjct 1806 GTGAAGGTGGGCAACTAACTGAAGCTGTAAGGAGGAGACCTTATTCAGTGGTTCTGTTTG 1865
Query 435 ATGAGATCGAGAAACCGCACCTTGATGTCTTCAGTATCTTGCTTCAACTACTAGACGATG 494
|||||||||||||| | |||| ||||||||||| | ||||||| ||||||||||| ||||
Sbjct 1866 ATGAGATCGAGAAAGCTCACCCTGATGTCTTCAATGTCTTGCTACAACTACTAGATGATG 1925
Query 495 GAAGAATAACTAATTCTCATGGTAGGACACTAAGTTTCACAAACTGTTTTGTAATAATTA 554
|||||||||| ||||||||||||||||| ||||||| |||||||| ||||| ||||| |
Sbjct 1926 GAAGAATAACCGATTCTCATGGTAGGACAGTAAGTTTTACAAACTGCTTTGTCATAATGA 1985
Query 555 CATCTAATATAGG 567
| |||||||||||
Sbjct 1986 CGTCTAATATAGG 1998
Score = 453 bits (245), Expect = 2e-126
Identities = 281/299 (94%), Gaps = 0/299 (0%)
Strand=Plus/Plus
Query 1262 CAGATGAGACAAGTGAAGAAGAGGTTGGAACAGAATAAAATAAATCTTGAGTACACAAAA 1321
|||||||||||| | ||||||||||||||||||||||||||||||||||| | ||| |||
Sbjct 2186 CAGATGAGACAATTAAAGAAGAGGTTGGAACAGAATAAAATAAATCTTGAATGCACGAAA 2245
Query 1322 GAAGCTGTGGATCTCCTTGCTCAGCTTGGCTTTGACCCCAACAATGGGGCAAGACCGGTG 1381
||||| ||||||||||||||||||||||| ||||||||||| || |||||||||||||||
Sbjct 2246 GAAGCGGTGGATCTCCTTGCTCAGCTTGGGTTTGACCCCAAGAACGGGGCAAGACCGGTG 2305
Query 1382 AAGCAAATGATTGAGAAGCTTGTGAAGAAGGAGATCACCCTCAAAGTTTTGAAAGGAGAT 1441
|||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 2306 AAGCGAATGATTGAGAAGCTTGTGAAGAAAGAGATCACCTTCAAAGTTTTGAAAGGAGAT 2365
Query 1442 TTTGCAGAGGATGGCACTATTCTTATCGATGCTGACCAGCCTAACAACAAACTGGTCATC 1501
||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 2366 TTTGCAGAGGATGACACTATTCTTATCGATGCTGACCAGCCGAACAACAAATTGGTCATC 2425
Query 1502 AAGAAGATGGAGAATAATGCTCATGTCAAAGAAAATTAGAAGATTTGGTTTTGTTCTAT 1560
||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 2426 AAGAAGATGGATAATAATGCTCATGTCAAACAAAATTAGACGATTTGGTTTTGTTCTAT 2484
Score = 283 bits (153), Expect = 3e-75
Identities = 184/199 (92%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 798 AATATAGGATCTCTACATATACTTGAGACTATTCGCAACAATGAAGATATCAAAGAAGCA 857
||||||||||||| ||| |||||||||||||| |||||||||||||||| |||||||| |
Sbjct 1991 AATATAGGATCTCAACACATACTTGAGACTATCCGCAACAATGAAGATAGCAAAGAAGAA 2050
Query 858 TTTTATGAAATGATGAAGCAACAAGTTGTGGAGTTAGCAAGAAAAACTTTTAGGCCAAAG 917
||||||||||||||||| ||||||||||||||||||||||||||||||| | |||| ||
Sbjct 2051 GTTTATGAAATGATGAAGAAACAAGTTGTGGAGTTAGCAAGAAAAACTTTCAAGCCAGAG 2110
Query 918 TTCATGAATAGAATTGATGAATACATAGTTTCTC-AGCCTTTAAATTCAAGCGAAATATC 976
||||||||||||||||||||||||||||||| || ||||||| ||||||| ||||||||
Sbjct 2111 TTCATGAATAGAATTGATGAATACATAGTTT-TCCAGCCTTTGGATTCAAGAGAAATATC 2169
Query 977 CAAAATCGTGGAGTTACAG 995
|||||||||||||||||||
Sbjct 2170 CAAAATCGTGGAGTTACAG 2188
> Ahg932624 jgi|Araly1|932624|scaffold_400612.1
Length=2483
Score = 283 bits (153), Expect = 3e-75
Identities = 236/276 (86%), Gaps = 6/276 (2%)
Strand=Plus/Plus
Query 1262 CAGATGAGACAAGTGAAGAAGAGGTTGGAACAGAATAAAATAAATCTTGAGTACACAAAA 1321
|||||||||| ||||||||| ||||||||| || ||||||||||||||||||||||||
Sbjct 2178 CAGATGAGACGAGTGAAGAATTTGTTGGAACAAAAGAAAATAAATCTTGAGTACACAAAA 2237
Query 1322 GAAGCTGTGGATCTCCTTGCTCAGCTTGGCTTTGACCCCAACAATGGGGCAAGACCGGTG 1381
||||| |||||||| |||||||||||||| ||||| ||||||||||||||||| || |||
Sbjct 2238 GAAGCGGTGGATCTACTTGCTCAGCTTGGGTTTGATCCCAACAATGGGGCAAGGCCAGTG 2297
Query 1382 AAGCAAA-TGATTGAGAAGCTTGTGAAGAAGGAGATCACCCTCAAAG-TTTTGAAAGGAG 1439
||| | | ||||| || || | ||||||||||||||| || ||||| ||||||| ||||
Sbjct 2298 AAG-AGAGTGATTCAGGAGATAGTGAAGAAGGAGATCTCC-TCAAAACTTTTGAAGGGAG 2355
Query 1440 AT-TTTGCAGAGGATGGCACTATTCTTATCGATGCTGACCAGCCTAACAACAAACTGGTC 1498
| ||| ||||||| | |||||| ||| |||||| |||||| |||||||||||| |||||
Sbjct 2356 AAATTT-CAGAGGAAGACACTATACTTCTCGATGTTGACCAACCTAACAACAAATTGGTC 2414
Query 1499 ATCAAGAAGATGGAGAATAATGCTCATGTCAAAGAA 1534
||||||||| | |||| |||||||| ||| |||||
Sbjct 2415 ATCAAGAAGCTAGAGATTAATGCTCCTGTTGAAGAA 2450
> Ahg944690 jgi|Araly1|944690|scaffold_700919.1
Length=298
Score = 52.8 bits (28), Expect = 8e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 589 GCCCATGAAGCAAGGGCTTTAGGCATCA 616
||||||||||||||||||||||||||||
Sbjct 271 GCCCATGAAGCAAGGGCTTTAGGCATCA 298
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67115011690
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5