BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25050.2
Length=3906
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320306 jgi|Araly1|320306|fgenesh1_pm.C_scaffold_4000363 4169 0.0
> Ahg320306 jgi|Araly1|320306|fgenesh1_pm.C_scaffold_4000363
Length=3372
Score = 4169 bits (2257), Expect = 0.0
Identities = 2648/2826 (94%), Gaps = 70/2826 (2%)
Strand=Plus/Plus
Query 100 ATGTTGGAAGATGAAGATTACAGAGTTTATGTGAGCCGCATAATGAGTCAGTTAAGGGAA 159
||||||||||||||||||||||||||||||||| ||||||||||||||||| || | |||
Sbjct 1 ATGTTGGAAGATGAAGATTACAGAGTTTATGTGGGCCGCATAATGAGTCAGCTACGAGAA 60
Query 160 CAGTTTCCCGGTGCATCATTCATGGTGTTTAATTTCCGGGATGGAGATAGCAGAAGCCGG 219
|||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 61 CAGTTTCCGGGTGCATCATTCATGGTGTTTAATTTCCGGGATGGAGACAGTAGAAGCCGG 120
Query 220 ATGGAGAGTGTACTAACTGAGTATGACATGACCATCATGGACTATCCTCGCCATTATGAA 279
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 121 ATGGAGAGTGTACTTACTGAGTATGACATGACTATCATGGACTATCCTCGCCATTATGAA 180
Query 280 GGTTGCCCTTTGCTTACAATGGAAACGGTGCATCACTTCCTAAAATCAGCTGAAAGTTGG 339
||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||
Sbjct 181 GGTTGCCCTTTGCTTACAATGGAAACGGTTCATCACTTTCTTAAATCAGCTGAAAGTTGG 240
Query 340 TTATTGTTAAGTCAACAGAATATCTTATTGTCGCACTGTGAGCTTGGCGGATGGCCGACT 399
|||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||
Sbjct 241 TTATTGTTAAGTCAACAGAATATCTTATTGTCTCACTGTGAGCTTGGTGGCTGGCCGACT 300
Query 400 TTAGCTTTTATGCTTGCTTCGCTCTTGTTATACCGCAAACAGTTTAGTGGAGAACACAGA 459
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 301 TTAGCTTTTATGCTTGCTTCGCTCTTGTTATACCGCAAACAGTTTAGTGGAGAACAGAAA 360
Query 460 ACACTAGAAATGATATATAAGCAGGCTCCTCGTGAGTTGTTACAGCTAATGTCTCCACTA 519
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 361 ACACTAGAGATGATATATAAGCAGGCTCCTCGTGAGTTATTACAGCTAATGTCTCCACTA 420
Query 520 AATCCGCTGCCTTCACAGTTGAGGTTTCTTCAGTATATCTCGAGGAGGAATGTTGGCTCA 579
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||
Sbjct 421 AATCCGCTGCCTTCACAGTTGAGGTTTCTTCAGTATATTTCGAGAAGGAATGTTGGGTCA 480
Query 580 CAATGGCCACCGCTAGACCAGGCCCTTACATTAGACTGTGTTAATCTTAGACTGATTCCT 639
|| |||||||||||||| | ||| ||||||||||||| ||| ||||||||||||||||||
Sbjct 481 CAGTGGCCACCGCTAGATCGGGCTCTTACATTAGACTATGTCAATCTTAGACTGATTCCT 540
Query 640 GATTTTGATGGTGAGGGTGGTTGCCGACCCATATTCAGAATATATGGTCAAGATCCTTTT 699
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 541 GATTTTGATGGTGAGGGTGGTTGCAGACCCATATTCAGAATATATGGTCAAGATCCTTTT 600
Query 700 ATGGCTTCTGATCGGACTTCAAAAGTTCTTTTCTCGATGCCTAAAAGAAGCAAAGCTGTT 759
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ATGGCTTCCGATCGGACTTCAAAAGTTCTTTTCTCGATGCCTAAAAGAAGCAAAGCTGTT 660
Query 760 -AGGCAATATAAGCAGGCAGATTGTGAACTGGTAAAGATTGACATCAATTGCCATATTCT 818
| |||||||||||||||||| ||||| |||||||||||||| ||| |||||||||||||
Sbjct 661 CA-GCAATATAAGCAGGCAGACTGTGAGCTGGTAAAGATTGATATCCATTGCCATATTCT 719
Query 819 CGGTGATGTCGTGCTAGAGTGCATTACCCTAGGTAGTGATCTTGAGAGGGAAGAGATGAT 878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 CGGTGATGTCGTGCTAGAGTGCATTACCCTAGGTAGTGATCTTGAGAGGGAAGAGATGAT 779
Query 879 GTTTCGGGTCGTGTTCAATACTGCATTTCTTAGATCAAACATTCTAACACTTAACCGTGG 938
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GTTTCGGGTTGTGTTCAATACTGCATTTCTTAGATCAAACATTCTAACACTTAACCGTGA 839
Query 939 TGAGATTGATGTACTGTGGAATACAACGGATCGGTTTCCCAAGGATTTCAGTGCAGAGGT 998
||||||||||||||||||||| ||||| |||||||||||||| ||||| |||||||||||
Sbjct 840 TGAGATTGATGTACTGTGGAACACAACAGATCGGTTTCCCAAAGATTTTAGTGCAGAGGT 899
Query 999 TATATTTTCGGAGATGGGTGCTGGTAAAAAGCTTGCCTCTGTTGATCTGCCACATATGGA 1058
|||||||||||||||||||||||||||||| |||| | ||||||||| || ||||||||
Sbjct 900 TATATTTTCGGAGATGGGTGCTGGTAAAAATCTTGTCGCTGTTGATCACCCGCATATGGA 959
Query 1059 GGAAAAAGATGTTTTACCTATGGAAGCATTTGCTAAGGTTCAAGAGATATTTAGTGAAGC 1118
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 960 GGAAAAAGATGTTTTACCTATGGAAGCATTTGCTAAGGTTCAGGAGATTTTTAGTGAAGC 1019
Query 1119 TGAATGGTTGGATCCAAATTCTGATGTTGCTGTGACTGTTTTCAACCAAATAACAGCAGC 1178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 TGAATGGTTGGATCCAAATTCTGATGTTGCTGTGACTGTTTTCAACCAAATAACAGCAGC 1079
Query 1179 AAATATCCTTCAAGAAAGCTTGGATTCAGGTTCTCCTCGAAGCCCTGACTCACGTAGCCT 1238
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1080 AAATATCCTTCAAGAAAGCTTGGATTCAGGGTCTCCTCGAAGCCCTGACTCACGTAGCCT 1139
Query 1239 ATTGGAATCGGCACTTGAGAAAGTTAAGGAGAAAACCAAGTTGATGATATCGGAAAATAT 1298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 ATTGGAATCGGCACTTGAGAAAGTTAAGGAGAAAACCAAGTTGATGATATCGGAAAATAT 1199
Query 1299 TGTTTCAAGTCCTGATACATCCTCTCCTGAA---AAAGAGAAAGATACAATGTCCTCTCA 1355
|||| ||||||||||| |||||||||||||| |||||||||||| || ||||||||||
Sbjct 1200 TGTTGCAAGTCCTGATGCATCCTCTCCTGAATGGAAAGAGAAAGATGCAGTGTCCTCTCA 1259
Query 1356 TAAATCTTATGCAGATCCGAATTCAATCCTTAAGAAGGTTGACGAATCGCGTGGACTTCG 1415
|||||||||||| |||||||||||||||||||| |||||||| ||||||| |||||||||
Sbjct 1260 TAAATCTTATGCCGATCCGAATTCAATCCTTAAAAAGGTTGATGAATCGCATGGACTTCG 1319
Query 1416 AGTTTCAGTCCAAAGAAATGTTCACTCAAAGATATTTTCACCTCGAATGGTCCAAAGTCC 1475
|||||||||||||||||||||||| | |||||| ||||||||||| | |||||||||||
Sbjct 1320 GGTTTCAGTCCAAAGAAATGTTCACCCGAAGATAATTTCACCTCGAGTAGTCCAAAGTCC 1379
Query 1476 AGTAACATCACCACTTCCAAACCGTAGC-CCCACACAAGGATCACCTGCTTCAATATCCA 1534
|||||||||||||||||||||||||| | |||||||||||||| || |||||| ||||||
Sbjct 1380 AGTAACATCACCACTTCCAAACCGTA-CTCCCACACAAGGATCGCCCGCTTCAGTATCCA 1438
Query 1535 GATTTCACAGCTCACCCTCTAGCCTTGGGATCACTTCAATATTACATGATCATGGTTCAT 1594
| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||| | |
Sbjct 1439 GGTTTCACAGCTCCCCCTCTAGCCTTGGGATCACTTCAATATTACACGATCATGGTACGT 1498
Query 1595 GTAAAGATGAAGAGTCTACTTCATCATCACCAGCTTCACCGTCAATTTCGTTTCTACCAA 1654
|||||| ||||||||||||||||||||||||||| ||||| || ||||||||||||||||
Sbjct 1499 GTAAAGGTGAAGAGTCTACTTCATCATCACCAGCCTCACCTTCGATTTCGTTTCTACCAA 1558
Query 1655 CATTGCATCCGCTGACATCATCGCAACCCAAAAAAGCTTCTCCACAATGT-CCACAGTCT 1713
||||||||||||| || | | || |||| |||||||||||| || ||||||||
Sbjct 1559 CATTGCATCCGCT-AC--C--C--AA---AAAA--GCTTCTCCACAA-GTTCCACAGTCG 1605
Query 1714 CCCACACCTGTTCATTCAAATGGCCCTCCTTCAGCAGAAGCAGCAGTGACGTCATCACCA 1773
|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1606 CCCACACCTGTTTGTTCAAATGGCCCTCCTTCAGCAGAAGCAGCAGTGACGTCACCACCA 1665
Query 1774 TTGCCACCACTGAAGCCACTGAGGATTTTGTCT-CGTCCGCCTCCAC-CCC-C---A-CC 1826
||||||| |||||||||||| |||||||||||| | ||| ||||||| ||| | | ||
Sbjct 1666 TTGCCACTACTGAAGCCACTTAGGATTTTGTCTAC-TCCACCTCCACTCCCACCCCAACC 1724
Query 1827 CCCACCTCCCATATCCTCTCTGCGCTCCACTCCTTCACCAAGTTCCACCAGCAATTCCAT 1886
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1725 CCCACCTCCCATATCCTCTCTGCGCTCCACTCCTTCACCAAGTTCCACCAGCAGTTCCAT 1784
Query 1887 AGCAACACAAGGGCCTCCTCCACCTCCACCTCCGCCTCCTC-T--AC--AATCT-CA-CC 1939
|||||||||||||||| |||||||||||||||| ||||| | | || ||||| || ||
Sbjct 1785 AGCAACACAAGGGCCTACTCCACCTCCACCTCCACCTCCGCCTCCACCTAATCTACAACC 1844
Query 1940 ---GT-T-CTGCACTTTCATCTTCTCCTCTGCCACCACCTTTACCTCCAAAGAAATTGTT 1994
|| | |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1845 TCAGTGTTCTGCACATTCATCTTCTCCTCTGCCACCACCTTTACCTCCAAAGAAATTGTT 1904
Query 1995 AGCTACAACTAATCCTCCACCTCCACCACCACCACCTTTGCATTCTAATTCTCGAATGGG 2054
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1905 AGCTACAACTAATCCTCCACCTCCACCACCACCACCTTTGCATTCTAATTCTCGAACGGG 1964
Query 2055 AGCCCCCACAAGTTCTTTGGTGTTGAAATCTCCTCCTGTTCCTCCTCCACCTGCCCCTGC 2114
|| |||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 1965 AGTCCCCACGAGTTCTTTGGTGGTGAAATCTCCTCCTGTTCCTCCTCCACCAGCCCCTGC 2024
Query 2115 ACCAT-TGTCTCG-T-TC-T-----C-AT---AATGGAAATATTCCTCCAGTCCCTGGAC 2161
||| | ||||||| | || | | || ||||||||||||||||||||||| ||||
Sbjct 2025 ACC-TCTGTCTCGCTCTCATAATGGCGATTGTAATGGAAATATTCCTCCAGTCCCCGGAC 2083
Query 2162 CACCATTGGGTTTAAAGGGGCGTGGGATTTTACAGAATCTTAAAGGTCAGGGTCAAACGA 2221
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2084 CACCATTGGGTTTAAAGGGGCGTGGGATTTTACAGAATCTTAGAGGTCAGGGTCAAACGA 2143
Query 2222 GAAAGGCCAACTTGAAACCGTATCATTGGTTAAAGCTTACTAGGGCAGTGCAAGGAAGTT 2281
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 2144 GAAAGGCCAACTTGAAACCGTATCATTGGTTAAAGCTTACAAGGGCGGTGCAAGGAAGTT 2203
Query 2282 TATGGGCTGAAGCGCAGAAATCTGATGAAGCTGCAACTGCTCCAGATTTTGACATCTCTG 2341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2204 TATGGGCTGAAGCGCAGAAATCTGATGAAGCTGCAACTGCTCCAGATTTTGACATCTCTG 2263
Query 2342 AGCTTGAGAAACTCTTCTCAGCAGTGAATCTTAGCTCTGACAGTGAAAACAATGGTGGGA 2401
|||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||
Sbjct 2264 AGCTTGAGAAACTCTTCTCAGCAGTGAATCTTAGCTCTGACAATGAAAGTAAAGGTGGGA 2323
Query 2402 AATCAGGTCGACGTGCCCGACCTAAAGTTGAGAAAGTGCAGCTGATTGAGCTCAGACGAG 2461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2324 AATCAGGTCGACGTGCCCGACCTAAAGTTGAGAAAGTGCAGCTGATTGAGCTCAGACGAG 2383
Query 2462 CATACAACTGTGAGATCATGCTCTCTAAAGTTAAAATACCTTTGCCTGATTTGATGAGTT 2521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2384 CATACAACTGTGAGATCATGCTCTCTAAAGTTAAAATACCTTTGCCTGATTTGATGAGTT 2443
Query 2522 CTGTTCTTGCTTTGGATGAGTCAGTGATAGATGTTGATCAAGTTGACAATCTAATAAAGT 2581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2444 CTGTTCTTGCTTTGGATGAGTCAGTGATAGATGTTGATCAAGTTGACAATCTAATAAAGT 2503
Query 2582 TTTGTCCAACAAAAGAAGAAGCAGAATTGCTCAAGGGCTTCACTGGAAATAAAGAAACTT 2641
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2504 TTTGTCCAACAAAAGAAGAAGCAGAATTGCTCAAGGGCTTCACTGGAAATAAGGAAACTT 2563
Query 2642 TGGGGCGGTGTGAGCAGTTCTTTTTAGAACTGCTGAAAGTTCCTCGAGTGGAGACTAAGC 2701
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2564 TGGGACGGTGTGAGCAGTTCTTTTTAGAACTGCTGAAAGTTCCTCGAGTGGAGACCAAGC 2623
Query 2702 TAAGGGTTTTCTCATTCAAGATTCAGTTTCACTCCCAAGTTACTGATCTTAGAAGAGGTT 2761
||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||
Sbjct 2624 TAAGGGTTTTCTCATTCAAGATTCAATTTCACTCCCAGGTTACTGATCTAAGAAGAGGTT 2683
Query 2762 TGAATACCATACATAGTGCAGCCAATGAGG----T---T--------AGAGGCTCGGCTA 2806
|||||||||||||| ||||||||||||||| | | |||||||||||||
Sbjct 2684 TGAATACCATACATCGTGCAGCCAATGAGGCAAGTCGATTTTTCGTTAGAGGCTCGGCTA 2743
Query 2807 AACTAAAAAGAATCATGCAAACTATACTTTCCTTGGGCAATGCATTGAACCACGGGACTG 2866
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2744 AACTAAAAAGAATCATGCAAACTATACTTTCCTTGGGAAATGCATTGAACCACGGGACTG 2803
Query 2867 CAAGGG 2872
||||||
Sbjct 2804 CAAGGG 2809
Score = 948 bits (513), Expect = 0.0
Identities = 547/564 (97%), Gaps = 0/564 (0%)
Strand=Plus/Plus
Query 2944 GGCTCAGCTATCGGATTTCGCCTGGATAGTCTTCTGAAACTCACTGACACTAGATCCCGT 3003
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2809 GGCTCAGCTATCGGGTTTCGCCTGGATAGTCTTCTGAAACTTACTGACACTAGATCCCGT 2868
Query 3004 AACAGTAAGATGACTCTGATGCACTATCTCTGTAAGGTGCTTGCCGAGAAACTTCCAGAG 3063
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2869 AACAGTAAGATGACTCTGATGCACTATCTCTGTAAGGTGCTTGCGGAGAAACTTCCAGAG 2928
Query 3064 CTACTTAATTTTCCAAAAGACTTGGTGAGCTTGGAGGCTGCGACAAAGATTCAACTAAAA 3123
|||||| |||||||||||||| | ||||||||||||||||| ||||||||||||||||||
Sbjct 2929 CTACTTGATTTTCCAAAAGACCTAGTGAGCTTGGAGGCTGCAACAAAGATTCAACTAAAA 2988
Query 3124 TACCTGGCAGAGGAGATGCAAGCAATTAGCAAAGGGTTGGAGAAAGTTGTACAAGAGTTT 3183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2989 TACCTGGCAGAGGAGATGCAAGCAATTAGCAAAGGGTTGGAGAAAGTTGTACAAGAGTTT 3048
Query 3184 ACTGCATCTGAAACTGATGGTCAAATATCAAAACACTTTCGAATGAACTTGAAAGAGTTT 3243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3049 ACTGCATCTGAAACTGATGGTCAAATATCAAAACACTTTCGAATGAACTTGAAAGAGTTT 3108
Query 3244 CTTAGCGTTGCTGAAGGAGAAGTAAGGTCCTTGGCTTCTCTCTATTCGACTGTGGGTGGA 3303
|||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 3109 CTTAGCTTTGCTGAAGGAGAAGTAAGGTCCTTGGCTTCTCTCTATTCAACTGTCGGTGGA 3168
Query 3304 AGCGCCGATGCTTTGGCGTTATACTTCGGAGAAGATCCAGCTCGTGTCCCATTTGAGCAA 3363
|||||||| ||||||||||||||||| ||||||||||| ||||||||||| |||||||||
Sbjct 3169 AGCGCCGACGCTTTGGCGTTATACTTTGGAGAAGATCCTGCTCGTGTCCCCTTTGAGCAA 3228
Query 3364 GTTGTATCCACTCTGCAAAACTTTGTTAGAATATTTGTGCGATCACACGAGGAAAACTGC 3423
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 3229 GTTGTATCCACTCTGCAAAACTTTGTTAGAATATTTGTGCGGTCACACGAGGAAAACTGC 3288
Query 3424 AAGCAAGTTGAGTTTGAGAAGAAGAGAGCACAGAAGGAAGCAGAGAATGAAAAACTTAAG 3483
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 3289 AAGCAAGTCGAGTTTGAGAAGAAGAGAGCACAGAAGGAAGCAGAGAACGAAAAACTTAAG 3348
Query 3484 AAAGGTGTGTACAATGAGAATTGA 3507
||||||||||||||||||||||||
Sbjct 3349 AAAGGTGTGTACAATGAGAATTGA 3372
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 147625325667
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5