BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25060.1
Length=789
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481360 jgi|Araly1|481360|fgenesh2_kg.4__420__AT2G25060.1 1027 0.0
Ahg491553 jgi|Araly1|491553|fgenesh2_kg.7__986__AT4G31840.1 283 1e-75
> Ahg481360 jgi|Araly1|481360|fgenesh2_kg.4__420__AT2G25060.1
Length=725
Score = 1027 bits (556), Expect = 0.0
Identities = 657/704 (93%), Gaps = 13/704 (2%)
Strand=Plus/Plus
Query 81 CATCTATGGCTTCTTCTTCACTTCA-CGTTGCTATCTTCTCTTTAATCTTCTTATTCTCA 139
|||||||||||||| |||| ||| | |||| |||||||||| || ||||||||||||||
Sbjct 27 CATCTATGGCTTCTCCTTCGCTT-ATCGTTTCTATCTTCTCCTTCATCTTCTTATTCTCT 85
Query 140 CTCGCCGCTGCAAATGAAGTCACCGTCGGTGGAAAATCCGGCGACTGGAAGATCCCTCCT 199
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 86 CTCGCCGCTGCAAATGAAGTAACCGTCGGTGGAAAATCCGGTGACTGGAAGATCCCTCCT 145
Query 200 TCCTCTTCTTACTCATTCACTGAGTGGGCTCAAAAAGCTCGCTTCAAAGTCGGCGACTTT 259
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 146 TCCTCTTCTTACTCATTCACCGAGTGGGCTCAAAAAGCTCGCTTCAAAGTCGGCGACTTT 205
Query 260 ATTGTTTTCCGGTATGAATCTGGTAAAGACTCTGTTTTGGAAGTAACAAAAGAAGCTTAC 319
|||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 206 ATTGTTTTCCGGTACGAATCTGGTAAAGACTCGGTTTTGGAAGTAACTAAAGAAGCTTAC 265
Query 320 AACAGCTGCAACACCACGAACCCTTTGGCTAACTACACTGATGGAGAAACCAAGGTGAAA 379
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 266 AACAGCTGCAACACCACGAACCCTTTGGCTAACTACACAGATGGAGAAACCAAAGTGAAA 325
Query 380 TTGGACAGGTCTGGTCCTTTCTACTTCATTAGTGGAGCTAATGGTCACTGTGAGAAAGGT 439
|| ||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 326 TTAGACCGTTCTGGTCCATTCTACTTCATTAGTGGAGCTAATGGTCACTGTGAGAAAGGT 385
Query 440 CAGAAGCTGAGCCTTGTTGTGATCAGTCCTCGTCACAGTGTCATCTCTCCAGCTCCTTCT 499
|||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||
Sbjct 386 CAGAAGCTGAGCCTCGTCGTGATCAGTCCTCGTCACAGTGTCATCTCTCCGGCTCCTTCT 445
Query 500 CCGGTTGAATTCGAAGATGGTCCAGCTTTGGCTCCAGCTCCCATTAGCGGCTCAGTTAGG 559
|||||||| || ||||||||||||||||||||||||||||| | || ||||||||||||
Sbjct 446 CCGGTTGAGTTTGAAGATGGTCCAGCTTTGGCTCCAGCTCCAACCAGTGGCTCAGTTAGG 505
Query 560 CTTGGTGGTTGT-TAT--GTTGTGTTAGGTCTTGTTCTTGGTCTATGTG-CTTGGTTCTG 615
| ||||||| || ||| |||||||||||||||||||||||||||| || ||||||||||
Sbjct 506 CATGGTGGTGGTCTATATGTTGTGTTAGGTCTTGTTCTTGGTCTAT-TGGCTTGGTTCTG 564
Query 616 ATTTGGAACCATGTGATGAGTTTGCTTTTTAGAATGAGCTTTTT-GTTTCAAAAAGCTTT 674
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 565 ATTTGGAACCATGTGATGAGTTTGCTTTTTAGAATGAGCTTTTTTGTTTTAAAAAGCTTT 624
Query 675 CTTTCTTA--TGATTACATGTTGTGTTGTTGTTAGCTAAGAGATCTTTGTCCTTTGGCTC 732
||| ||| |||||||||| ||||||||| | |||||||||||||||||| ||||||||
Sbjct 625 TTTTTTTAAATGATTACATGCTGTGTTGTT-T-AGCTAAGAGATCTTTGTC-TTTGGCTC 681
Query 733 CTTGCTACTATTTTGTTATAAATTCAATTTATTATTATTTCTCA 776
|||||||||||||| |||||||||||||||||||||||||||||
Sbjct 682 CTTGCTACTATTTTATTATAAATTCAATTTATTATTATTTCTCA 725
> Ahg491553 jgi|Araly1|491553|fgenesh2_kg.7__986__AT4G31840.1
Length=832
Score = 283 bits (153), Expect = 1e-75
Identities = 342/431 (79%), Gaps = 22/431 (5%)
Strand=Plus/Plus
Query 82 ATCTATGGCTTCTTCTTCACTTC-ACGTTGCTATCTT-CTCTTTA-ATC-TTCTTATTC- 136
||| |||||||||||||| |||| | ||| | ||||| |||| | || ||||| |||
Sbjct 104 ATCAATGGCTTCTTCTTCTCTTCTA-GTTACCATCTTCCTCTGCATTTCTTTCTTCTTCT 162
Query 137 TC-ACT-CGCCGCTGCAAATGAAGTCACCGTCGGTGGAAAATCCGGCGACTGGAAGATCC 194
|| | || | ||||||||| || |||||||| ||||||||||| |||||||||||||
Sbjct 163 TCTTGTCCGTGGATGCAAATGAGGTTACCGTCGGAGGAAAATCCGGTGACTGGAAGATCC 222
Query 195 CTCCTTCCTCTTCTTACTCATTCA-CTGAGTGGGCTCAAAAAGCTCGCTTCAAAGTCGGC 253
||||||||||||||| ||| |||| | || ||||||||||| ||||||||||||||||||
Sbjct 223 CTCCTTCCTCTTCTTTCTCTTTCAAC-GAATGGGCTCAAAAGGCTCGCTTCAAAGTCGGC 281
Query 254 GACTTTATTGTTTTCCGGTATGAATCTGGTAAAGACTCTGTTTTGGAAGTAACAAAAGAA 313
|||||||| |||||| |||| ||| | ||||||||||| ||| || |||| ||| |||
Sbjct 282 GACTTTATCGTTTTCAGGTACGAAGCCGGTAAAGACTCGGTTCTGCAAGTGACACGAGAG 341
Query 314 GCTTACAACAGCTGCAACACCACGAACCCTTTGGCTAACTACACTGATGGAGAA-ACCAA 372
|||||| | | ||||||||||| | |||| || | |||||| || || ||| || ||
Sbjct 342 GCTTACGAGAAATGCAACACCACTAGCCCTAAAGCCAGCTACACCGACGG-GAACACAAA 400
Query 373 GGTGAAATTGGAC-AGGTCTGGTCCTTTCTACTTCATTAGTGGAGCTA-ATGGTCACTGT 430
|||||| | ||| | | | ||||| |||||||||| |||||| | | | ||||| |||
Sbjct 401 GGTGAAGCTAGACCAAGCC-GGTCCGGTCTACTTCATCAGTGGAAC-AGAGGGTCATTGT 458
Query 431 GAGAAAGG-TCAGAAGCTGA-GCCTTGTTGTGATCAGTCCTCGTCACAGTGTCAT-CTCT 487
| ||||| ||||||||| | |||| || || |||| ||||||| || || | | ||||
Sbjct 459 CA-AAAGGGTCAGAAGCT-ACGCCTAGTCGTCATCACTCCTCGTAACTCTG-CTTTCTCT 515
Query 488 CCAGCTCCTTC 498
|||||||||||
Sbjct 516 CCAGCTCCTTC 526
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29125908588
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5