BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25070.1
Length=1517
Score E
Sequences producing significant alignments: (Bits) Value
Ahg344104 jgi|Araly1|344104|fgenesh1_pg.C_scaffold_4000446 1696 0.0
Ahg491551 jgi|Araly1|491551|fgenesh2_kg.7__984__AT4G31860.1 972 0.0
> Ahg344104 jgi|Araly1|344104|fgenesh1_pg.C_scaffold_4000446
Length=1068
Score = 1696 bits (918), Expect = 0.0
Identities = 1019/1069 (95%), Gaps = 2/1069 (0%)
Strand=Plus/Plus
Query 173 ATGGGTACATACCTAAGTTCTCCGAAAACTGAAAAGTTATCAGAAGATGGTGAGAATGAT 232
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGGGTACATACCTAAGTTCTCCTAAAACTGATAAGTTATCAGAAGATGGTGAGAATGAT 60
Query 233 AAGCTCAGATTTGGTTTATCGTCTATGCAAGGTTGGCGCGCTACCATGGAAGACGCGCAT 292
|| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 AATCTCAGATATGGTTTATCGTCTATGCAAGGTTGGCGCGCTACCATGGAAGATGCGCAT 120
Query 293 GCTGCAATTCTTGATCTTGATGATAAGACATCGTTCTTCGGTGTGTATGATGGCCATGGA 352
||||||||||||||||| ||||||||||| ||||||||||| ||||| ||||| |||||
Sbjct 121 GCTGCAATTCTTGATCTGGATGATAAGACGTCGTTCTTCGGGGTGTACGATGGGCATGGG 180
Query 353 GGTAAAGTCGTTGCAAAGTTCTGTGCCAAGTATCTACACCAGCAGGTTATCAGTAATGAA 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GGTAAAGTCGTTGCAAAGTTCTGTGCCAAGTATCTACACCAGCAGGTTATCAGTAATGAA 240
Query 413 GCGTATAAAACTGGAGACGTCGAAACATCTCTTCGAAGAGCATTCTTTAGAATGGATGAC 472
|| |||||| |||||||| | |||||| |||||||||||||||| |||||||||||||||
Sbjct 241 GCATATAAAGCTGGAGACATAGAAACAGCTCTTCGAAGAGCATTTTTTAGAATGGATGAC 300
Query 473 ATGATGCAAGGACAAAGAGGATGGCGAGAGTTAGCTGTACTTGGCGACAAGATGAACAAA 532
||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||
Sbjct 301 ATGATGCAAGGACAAAGAGGATGGCGAGAGTTAGCTGTACTCGGTGACAAGATGAATAAA 360
Query 533 TTTAGCGGCATGATTGAAGGATTTATATGGTCACCAAGAAGCGGTGACACCAATAACCAA 592
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 361 TTTAGCGGCATGATTGAAGGATTTATATGGTCACCAAGAAGCGGTGACACTAATAAACAG 420
Query 593 CCCGATAGTTGGCCTCTTGAAGATGGTCCTCATTCTGATTTCACGGGACCTACCTCGGGG 652
||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 421 CCCGATAATTGGCCTCTTGAGGATGGTCCTCATTCTGATTTCACGGGACCTACTTCGGGG 480
Query 653 TGCACAGCGTGTGTAGCTCTTATTAAAGATAAGAAGCTCTTTGTTGCAAATGCCGGTGAC 712
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TGCACAGCATGCGTAGCTCTTATTAAAGATAAGAAGCTCTTTGTTGCAAATGCCGGTGAC 540
Query 713 TCACGTTGTGTGATATCAAGAAAGAGTCAGGCTTACAATCTTTCTAAAGATCACAAGCCT 772
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 541 TCACGTTGTGTGATATCAAGAAACAGTCAGGCTTACAATCTTTCTAAAGATCACAAGCCT 600
Query 773 GATCTTGAAGTTGAAAAAGAAAGGATATTGAAAGCTGGTGGCTTTATTCACGCTGGGAGA 832
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 601 GATCTTGAAGTTGAAAAAGAAAGGATATTGAAAGCTGGTGGCTTTATTCACGCTGGTAGA 660
Query 833 ATCAATGGAAGCTTGAATCTGACAAGAGCCATTGGTGATATGGAGTTCAAGCAGAATAAG 892
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 661 ATCAATGGAAGCTTGAATCTGACAAGAGCCATTGGTGATATGGAATTCAAGCAGAACAAA 720
Query 893 TTTTTACCATCTGAAAAGCAAATGGTTACTGCTGATCCAGATATAAACACTATTGACCTA 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TTTTTACCATCTGAAAAGCAAATGGTTACTGCTGATCCAGATATAAACACTATTGACCTA 780
Query 953 TGTGATGATGATGACTTTCTTGTTGTTGCTTGCGATGGAATATGGGATTGTATGTCAAGC 1012
|||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||
Sbjct 781 TGTGATGATGATGATTTTCTTGTTGTTGCATGTGATGGAATATGGGATTGTATGTCAAGC 840
Query 1013 CAGGAACTAGTTGATTTTATCCATGAACAGTTAAAATCTGAAACAAAACTTTCAACAGTA 1072
||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 841 CAGGAACTAGTGGATTTTATCCATGAACAGTTAAAATCTGAAACAAAACTTTCCACGGTA 900
Query 1073 TGTGAAAAGGTTGTTGATAGATGTTTGGCTCCAGATAC-AGCGACTGGTGAAGGTTGTGA 1131
|| ||||| |||||||||| ||||||||||||||| || | ||| ||| |||||||||||
Sbjct 901 TGCGAAAAAGTTGTTGATAAATGTTTGGCTCCAGACACTA-CGAGTGGAGAAGGTTGTGA 959
Query 1132 TAATATGACCATCATCTTGGTTCAGTTCAAGAAGCCTAACCCATCTGAGACTGAACCAGA 1191
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 960 TAATATGACCATCATCTTGGTTCAGTTCAAGAAGCCTAACCCATCCGAGACTGAACCAGA 1019
Query 1192 AGATTCCAAACCAGAACCAAGCGAAGATGAGCCGAGCTCATCAAGCTAG 1240
||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1020 AGAATCCAAACCAGAACCAAGCGAAGATGAGCCGAGCTCTTCAAGCTAG 1068
> Ahg491551 jgi|Araly1|491551|fgenesh2_kg.7__984__AT4G31860.1
Length=1556
Score = 972 bits (526), Expect = 0.0
Identities = 851/1008 (84%), Gaps = 22/1008 (2%)
Strand=Plus/Plus
Query 172 GATGGGTACATACCTAAGTTCTCCGAAAACTGAAAAGTTATCAGAAGATGGTGAGAATGA 231
|||||||| ||| |||||| |||| ||||| |||||||| ||||||||||| || |||||
Sbjct 207 GATGGGTATATATCTAAGTACTCCTAAAACAGAAAAGTTCTCAGAAGATGGCGAAAATGA 266
Query 232 TAAGCTCAGATTTGGTTTATCGTCTATGCAAGGTTGGCGCGC-TACCATGGAAGACGCGC 290
||| ||||||| ||||||||| ||||||||||||||||| || | |||||||||| ||||
Sbjct 267 TAAACTCAGATATGGTTTATCCTCTATGCAAGGTTGGCGTGCGT-CCATGGAAGATGCGC 325
Query 291 ATGCTGCAATTCTTGATCTTGATGATAAGACATCGTTCTTCGGTGTGTATGATGGCCATG 350
||||||||||||||||||| |||||||| || || || || ||||| |||||||| ||||
Sbjct 326 ATGCTGCAATTCTTGATCTCGATGATAACACTTCCTTTTTGGGTGTCTATGATGGTCATG 385
Query 351 GAGGTAAAGTCGTTGCAAAGTTCTGTGCCAAGTATCTACACCAGCAGGTTATCAGTAATG 410
|||||||||| ||| |||||||||| |||||||||||||| ||||||||| |||||||||
Sbjct 386 GAGGTAAAGTTGTTTCAAAGTTCTGCGCCAAGTATCTACATCAGCAGGTTCTCAGTAATG 445
Query 411 AAGCGTATAAAACTGGAGACGTCGAAACATCTCTTCGAAGAGCATTCTTT-AGAATGGAT 469
| || ||| | |||||||||| | ||| ||||||| || |||||| ||| |||||||||
Sbjct 446 AGGCATATGCAGCTGGAGACGTAGGAACTTCTCTTCAAAAAGCATT-TTTCAGAATGGAT 504
Query 470 GACATGATGCAAGGACAAAGAGGATGGCGAGAGTTAGCTGTACTTGGCGACAAGATGAAC 529
|| ||||||||||||||||||||||||||||||||||| ||||| || ||||| || ||
Sbjct 505 GAGATGATGCAAGGACAAAGAGGATGGCGAGAGTTAGCAGTACTCGGTGACAAAATCAAT 564
Query 530 AAATTTAGCGGCATGATTGAAGGATTTATATGGTCACCAAGAAGCGGTGACACCAATAAC 589
|| || ||||| ||||||||||| |||||||||||||||||||||| || | | |||
Sbjct 565 AAGTTCAGCGGGATGATTGAAGGGCTTATATGGTCACCAAGAAGCGGGGATAACGCTAAT 624
Query 590 CAACCCGATAG-TTGGCC-TCTTGAAGATGGTCCTCATTCTGATTTCAC-GGGACCTACC 646
|||| ||| | |||| | | |||| || ||||||||||||||||| | ||| ||||
Sbjct 625 AAACCTGAT-GCTTGGGCGT-TTGAGGAAGGTCCTCATTCTGATTTTGCTGGG-CCTAAT 681
Query 647 TCGGGGT-GCACAGCGTGTGTAGCTCTTATTAAAGATAAGA-AGCTCTTTGTTGCAAATG 704
|| || | |||| || || |||||| |||||| ||| || | |||| |||||||||||||
Sbjct 682 TCTGG-TAGCACGGCATGCGTAGCTGTTATTAGAGACAA-ACAGCTATTTGTTGCAAATG 739
Query 705 CCGGTGACTCACGTTGTGTGATATCAAGAAAGAGTCAGGCTTACAATCTTTCTAAAGATC 764
| ||||||||||||||||||||||| ||||| | |||||||||||||||||||| |||||
Sbjct 740 CAGGTGACTCACGTTGTGTGATATCCAGAAAAAATCAGGCTTACAATCTTTCTAGAGATC 799
Query 765 ACAAGCCTGATCTTGAAGTTGAAAAAGAAAGGATATTGAAAGCTGGTGGCTTTATTCACG 824
|||| || |||||||||| ||| |||||||||||||||||||||||||||||||| || |
Sbjct 800 ACAAACCAGATCTTGAAGCTGAGAAAGAAAGGATATTGAAAGCTGGTGGCTTTATACATG 859
Query 825 CTGGGAGAATCAATGGAAGCTTGAATCTGA-CAAGAGCCATTGGTGATATGGAGTTCAAG 883
| ||| || ||||||||||||| ||||| | || |||| || ||||| ||||| ||||||
Sbjct 860 CAGGGCGAGTCAATGGAAGCTTAAATCT-ATCACGAGCTATCGGTGACATGGAATTCAAG 918
Query 884 CAGAATAAGTTTTTACCATCTGAAAAGCAAATGGTTACTGCT-GATCCAGATATAAACAC 942
|||||||||||||| ||| |||||||||||| ||||| || | ||||||| |||||||
Sbjct 919 CAGAATAAGTTTTTGTCATTTGAAAAGCAAATAGTTACCGCCAG-TCCAGATGTAAACAC 977
Query 943 TATTGACCTATGTGATGATGATGACTTTC-TTGTTGTTGCTTGCGATGGAATATGGGATT 1001
| |||| || || ||||||||||| |||| ||||| |||| ||||||||||| |||||||
Sbjct 978 TGTTGAACTCTGCGATGATGATGA-TTTCCTTGTTCTTGCCTGCGATGGAATTTGGGATT 1036
Query 1002 GTATGTCAAGCCAGGAACTAGTTGATTTTATCCATGAACAGTTAAAATCTGAAACAAAAC 1061
| ||| ||||||| |||| |||||||| || |||||||| || || || || || ||||
Sbjct 1037 GCATGACAAGCCAACAACTCGTTGATTTCATACATGAACAATTGAATTCAGAGACCAAAC 1096
Query 1062 TTTCAACAGTATGTGAAAAGGTTGTTGATAGATGTTTGGCTCCAGATACAGC-GACTGGT 1120
| || ||||||||||| ||| | ||||||||| |||||||| | || || | ||||
Sbjct 1097 TCTCCGTGGTATGTGAAAAAGTTCTCGATAGATGTCTGGCTCCAAACACCGCAGG-TGGT 1155
Query 1121 GAAGGTTGTGATAATATGACCATCATCTTGGTTCAGTTCAAGAAGCCT 1168
||||| |||||||| |||||||| ||||||||||| ||||||||||||
Sbjct 1156 GAAGGCTGTGATAACATGACCATGATCTTGGTTCAATTCAAGAAGCCT 1203
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56792555295
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5