BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25080.1
Length=987
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932631 jgi|Araly1|932631|scaffold_400619.1 1216 0.0
Ahg328542 jgi|Araly1|328542|fgenesh1_pm.C_scaffold_7000769 451 4e-126
> Ahg932631 jgi|Araly1|932631|scaffold_400619.1
Length=751
Score = 1216 bits (658), Expect = 0.0
Identities = 720/750 (96%), Gaps = 3/750 (0%)
Strand=Plus/Plus
Query 65 ACTCGTCTCCGGTAACCAAAAATGGTTTCCATGACTACTTCATCTTCTTCGTACGGAACA 124
||||||||||||||||| ||||||||||| || |||| ||| |||||||| |||| | ||
Sbjct 1 ACTCGTCTCCGGTAACC-AAAATGGTTTCGATAACTATTTCGTCTTCTTCATACGCACCA 59
Query 125 TTCTCTACAGTCGTCAACAGTTCTAGACCTAATTCCTCAGCAACCTTTCTCGTCCCTTCC 184
|||||||||||| |||||| ||| ||||||||||| || ||||||||||||||||||||
Sbjct 60 TTCTCTACAGTCTTCAACACTTCCAGACCTAATTCATCTTCAACCTTTCTCGTCCCTTCC 119
Query 185 TTGAAATTCTCCACCGGAATATCGAATTTCGCGAATCTGAGTAATGGGTTTTCTCTAAAA 244
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TTCAAATTCTCCACCGGAATATCGAATTTCGCGAATCTGAGTAATGGGTTTTCTCTAAAA 179
Query 245 TCTCCAATTAATCCTGGGTTTCTCTTCAAGTCTCGTCCTTTCACTGTCCAAGCTAGAGCT 304
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 180 TCTCCAATTAATCCTGGGTTTCTCTTCAAGTCCCGTCCTTTCACTGTTCAAGCTAGAGCT 239
Query 305 GCTGCAGAAAAAACCGTTCACGATTTCACCGTTAAGGACATTGATGGGAAGGATGTTGCT 364
||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 240 GCTGCAGAAAAGACCGTTCACGACTTCACCGTTAAGGACATTGATGGGAAAGATGTTGCT 299
Query 365 TTGAACAAATTCAAGGGGAAAGTTATGTTGATTGTCAATGTTGCTTCAAGATGTGGTTTG 424
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TTGAACAAATTTAAGGGGAAAGTTATGTTGATTGTCAATGTTGCTTCAAGATGTGGTTTG 359
Query 425 ACATCATCAAATTACTCAGAGCTTTCACATCTGTACGAGAAATACAAAA-CTCAAGGATT 483
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 360 ACATCATCAAATTACTCAGAGCTTTCACATCTGTACGAGAAATACAAAAGC-CAAGGATT 418
Query 484 TGAGATTCTAGCTTTTCCCTGCAATCAGTTTGGTTTCCAAGAGCCCGGGTCAAACTCCGA 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 419 TGAGATTCTAGCTTTTCCCTGCAATCAGTTTGGTTTCCAAGAGCCCGGGTCAAACTCGGA 478
Query 544 GATCAAACAATTCGCTTGCACCCGGTTTAAAGCAGAGTTCCCTATATTTGATAAGGTTGA 603
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GATCAAACAATTTGCTTGCACCCGGTTTAAAGCAGAGTTCCCTATATTTGATAAGGTTGA 538
Query 604 CGTGAATGGACCAAGCACAGCGCCGATCTACGAGTTCTTGAAATCAAACGCAGGAGGATT 663
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 539 CGTGAATGGACCAAGCACAGCGCCCATCTACGAATTCTTGAAATCAAACGCAGGAGGATT 598
Query 664 CTTGGGTGGTCTCATTAAATGGAACTTTGAGAAGTTCTTGATTGATAAAAAGGGAAAGGT 723
|||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||
Sbjct 599 CTTGGGTGGTCTCATTAAATGGAACTTTGAAAAGTTTTTGATCGATAAAAAGGGAAAGGT 658
Query 724 CGTTGAGAGGTACCCTCCCACCACATCCCCTTTCCAAATCGAGAAAGACATCCAGAAGTT 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 CGTTGAGAGGTACCCTCCCACCACATCCCCTTTCCAAATCGAGAAAGACATCCAGAAGTT 718
Query 784 GCTTGCCGCTTAAAAACTTTTGCTCATGAG 813
||||||||||||||||||||||||||||||
Sbjct 719 GCTTGCCGCTTAAAAACTTTTGCTCATGAG 748
> Ahg328542 jgi|Araly1|328542|fgenesh1_pm.C_scaffold_7000769
Length=723
Score = 451 bits (244), Expect = 4e-126
Identities = 501/621 (81%), Gaps = 34/621 (5%)
Strand=Plus/Plus
Query 171 TTCTCGTCCCTTCCTTGAAATTCTCCACCGGAATATC-GAATTTC-G-CGA-ATCT--G- 223
|||||||||||| |||| |||||||||||||| ||| || || | | |||| |
Sbjct 77 TTCTCGTCCCTTAATTGAGATTCTCCACCGGAACATCAAAAACTCGGAATATATCTGGGT 136
Query 224 -A-GTAATGGGTTTTCTCTAAAATC-TCCAATTAATCCTGGGTTTCTCTTCAAGTCTC-G 279
| |||||||| |||| || ||||| || || ||||| | ||||||| |||| || | |
Sbjct 137 TAGGTAATGGGGTTTCCCTGAAATCGTCGAA-TAATCATAGGTTTCTAGTCAAATC-CAG 194
Query 280 TCCTTTCACTGTCCAAGCTAGAGCTGCTGCAGAAAAAACCGTTCACGATTTCACCGTTAA 339
||| ||| | || |||||||||||||| || || |||||||||||||| || ||
Sbjct 195 AAATTTTGGTGTTTATGCAAGAGCTGCTGCAGAGAAGACTGTTCACGATTTCACTGTAAA 254
Query 340 GGACATTGATGGGAAGGATGTTGCTTTGAACAAATTCAAGGGGAAAGTTATGTTGAT-TG 398
|||||| |||||||| |||||| || || |||||||||| || ||| | ||||||| |
Sbjct 255 GGACATAGATGGGAATGATGTTTCTCTGGACAAATTCAAAGGAAAACCTCTGTTGATCT- 313
Query 399 TCAATGTTGCTTCAAGATGTGGTTTGACATCATCAAATTACTCAGAGCTTTCACATCTGT 458
| || || ||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 314 TTAACGTCGCTTCAAGATGTGGTTTGACATCATCAAATTACTCGGAGCTTTCTCATCTGT 373
Query 459 ACGAGAAATACAA-AACTCAAGG--ATTTGAGATTCTAGCTTTTCCCT-GCAATCAGTTT 514
|||| |||||||| ||| ||||| |||||||||||| ||||| |||| ||||||| |||
Sbjct 374 ACGAAAAATACAAGAAC-CAAGGTGATTTGAGATTCTTGCTTT-CCCTTGCAATCAATTT 431
Query 515 GGTT-TCCAAGAGCCCGGGTCAAACTCC-GAGATCAAACAATTCGCTTGCACCCGGTTTA 572
|| || |||| ||||| |||||| || |||||||| ||||| ||||||||||| || |
Sbjct 432 GGAGGTC-AAGAACCCGGTTCAAAC-CCTGAGATCAAGCAATTTGCTTGCACCCGATTCA 489
Query 573 AAGCAGAGTTCCCTATATTTGATAAGGT-TGACG-TG--AATGGACCAAGCACAGCGCCG 628
||| |||||||||||||| || ||||| || | || ||||||||||||||||| ||
Sbjct 490 AAGTGGAGTTCCCTATATTCGACAAGGTATGTTGATGTCAATGGACCAAGCACAGCTCCA 549
Query 629 ATCTACGAGTTCTTGAAATCAAACGCAGGAGGATT-CTTGGGTGGTCTCATTAAATGGAA 687
|||||| ||||||||||||| || || || || || ||||| || | |||| ||||||||
Sbjct 550 ATCTACAAGTTCTTGAAATCTAATGCTGGTGGTTTTCTTGG-TGATATCATCAAATGGAA 608
Query 688 CTTTGAGAAGTTCTTGATTGATAAAAAGGG-AAAGGTCGTTGAGAGGTACCCTCCCACCA 746
||||||||| |||||| ||||||| ||| | |||| | || ||||| ||||||||||| |
Sbjct 609 CTTTGAGAAATTCTTGGTTGATAAGAAGTGCAAAGTT-GTCGAGAGATACCCTCCCACGA 667
Query 747 CATCCCCTTTCCAAA-TCGAG 766
| || |||||||||| |||||
Sbjct 668 CTTCTCCTTTCCAAAATCGAG 688
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36674246154
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5