BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25090.1
Length=1528
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481363 jgi|Araly1|481363|fgenesh2_kg.4__423__AT2G25090.1 2211 0.0
> Ahg481363 jgi|Araly1|481363|fgenesh2_kg.4__423__AT2G25090.1
Length=1510
Score = 2211 bits (1197), Expect = 0.0
Identities = 1412/1515 (93%), Gaps = 17/1515 (1%)
Strand=Plus/Plus
Query 15 ATATACTTGTAACTAGTCAGAC--A----A-AGACAATGGAAGAATCAAACCGTAGTAGT 67
|||||||||||||||||||||| | | ||||||||||||||||||||| |||||
Sbjct 1 ATATACTTGTAACTAGTCAGACAAAGTCTAGAGACAATGGAAGAATCAAACC---GTAGT 57
Query 68 ACTGTCTTGTTCGACAAATACAACATCGGAAGACTTCTCGGAACCGGTAACTTCGCCAAA 127
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 58 ACTGTCTTGTTCGACAAATACAACATCGGAAGACTTCTCGGTACCGGTAACTTCGCGAAA 117
Query 128 GTGTATCACGGAACAGAGATCTCCACCGGCGATGACGTGGCAATCAAAGTCATCAAAAAA 187
|| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 118 GTCTATCACGGAACAGAGATCTCCACCGGTGATGACGTGGCAATCAAGGTCATCAAAAAA 177
Query 188 GACCACGTTTTCAAACGTCGTGGCATGATGGAGCAAATCGAACGAGAGATCGCCGTCATG 247
||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 GACCATGCATTCAGACGTCGTGGCATGATGGAGCAAATCGAACGAGAGATCGCCGTCATG 237
Query 248 CGTCTCCTCCGTCATCCAAACGTGGTCGAGCTCCGCGAAGTAATGGCTACAAAGAAGAAG 307
||||||||||||||||||||||| ||||||||||| ||||| ||||| |||||||| |||
Sbjct 238 CGTCTCCTCCGTCATCCAAACGTCGTCGAGCTCCGTGAAGTGATGGCAACAAAGAAAAAG 297
Query 308 ATTTTCTTCGTCATGGAGTACGTCAACGGCGGAGAGCTTTTCGAAATGATCGATAGAGAT 367
|| ||||||||||||||||| ||||||||||| ||||| ||||| |||||||| ||||||
Sbjct 298 ATCTTCTTCGTCATGGAGTATGTCAACGGCGGCGAGCTCTTCGAGATGATCGAAAGAGAT 357
Query 368 GGGAAGCTCCCGGAGGATCTAGCCAGAAAGTATTTCCAACAATTGATATCCGCGGTGGAT 427
||| |||||||||||||||||||| |||| |||||||||||||| |||||||||||||||
Sbjct 358 GGGCAGCTCCCGGAGGATCTAGCCCGAAAATATTTCCAACAATTAATATCCGCGGTGGAT 417
Query 428 TTTTGCCACAGCCGCGGTGTTTTCCACCGCGATATTAAACCCGAGAATCTGTTGCTTGAC 487
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 418 TTTTGCCACAGCCGCGGTGTTTTCCACCGCGATATTAAGCCGGAGAATCTGTTGCTTGAC 477
Query 488 GGAGAAGGTGATCTTAAGGTAACGGATTTCGGACTTTCCGCATTGATGATGCCAGAAGGG 547
|||||||| ||||||||||| |||||||| |||||||| || ||||||||||||||||||
Sbjct 478 GGAGAAGGCGATCTTAAGGTGACGGATTTTGGACTTTCGGCGTTGATGATGCCAGAAGGG 537
Query 548 CTAGGTGGCAGGCGTGGTAGCAGCGATGATCTTTTACATACGCGGTGCGGGACACCGGCT 607
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
Sbjct 538 CTAGGTGGCAGGCGTGGTAGTAGCGATGATCTTTTACATACGCGGTGCGGGACGCCGTAT 597
Query 608 TACGTGGCGCCGGAGGTTTTACGGAATAAAGGATACGACGGAGCTATGGCTGATATTTGG 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TACGTGGCGCCGGAGGTTTTACGGAATAAAGGATACGACGGAGCTATGGCTGATATTTGG 657
Query 668 TCGTGCGGGATTGTTTTGTATGCACTCCTTGCTGGCTTCTTGCCGTTTATCGACGAAAAC 727
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 TCGTGCGGGATTGTTTTGTATGCACTCCTTGCTGGCTTCTTGCCGTTTATCGACGAAAAT 717
Query 728 GTCATGACATTGTACACGAAGATCTTCAAGGCGGAATGCGAGTTCCCACCGTGGTTTTCC 787
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 GTCATGACCTTGTACACGAAGATCTTCAAGGCGGAATGCGAGTTCCCACCGTGGTTTTCC 777
Query 788 TTAGAATCCAAGGAACTACTCTCAAGATTGCTTGTGCCGGATCCTGAACAAAGAATTTCA 847
||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 778 TTAGAGTCCAAGGAACTACTCTCAAGATTGCTTGTGCCAGATCCTGAACAACGAATTTCA 837
Query 848 ATGTCAGAGATCAAAATGATTCCATGGTTCCGAAAGAACTTTACACCATCAGTAGCCTTT 907
||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 838 ATGTCGGAGATCAAAATGATTCCATGGTTCCGAAAGAACTTTACACCGCCGGTAGCCTTT 897
Query 908 TCGATAGACGAAACGATCCCATCTCCACCGGAGCCACCAACaaagaaaaagaagaaagac 967
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 898 TCGATAGACGAAACGATCCCATCTCCACCAGAGCCACCAGCAAAGAAAAAGAAGAAAGAC 957
Query 968 ctaaacgagaaagaagaCGACGGAGCT-TCACCAAGATCCTTCAACGCCTTCCAATTCAT 1026
|||||| || | ||||||||||||| | || ||||||||||||||||| || ||||||||
Sbjct 958 CTAAACAAGGAGGAAGACGACGGAG-TGTCTCCAAGATCCTTCAACGCATTTCAATTCAT 1016
Query 1027 CACATCAATGTCTTCAGGTTTCGATCTCTCTAACCTATTCGAGATAAAACGAAAGCCAAA 1086
||||||||||||||| ||||| || |||||||||||||||||||||||||| ||||||||
Sbjct 1017 CACATCAATGTCTTCTGGTTTTGACCTCTCTAACCTATTCGAGATAAAACGGAAGCCAAA 1076
Query 1087 GCGGATGTTCACATCGAAGTT-CCCGGCGAAATCTGTTAAAGAGAGGCTGGAGACGGCGG 1145
||||||||||||||||||||| |||| ||||||||||||| |||||||| ||||||||||
Sbjct 1077 GCGGATGTTCACATCGAAGTTGCCCG-CGAAATCTGTTAAGGAGAGGCTAGAGACGGCGG 1135
Query 1146 CGCGTGAGATGGATATGAGAGTGAAACATGTAAAAGACTGCAAGATGAAGCTGCAAAGAA 1205
||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1136 CGCGTGAGATGAACATGAGAGTGAAACATGTAAAAGACTGCAAGATGAAGCTACAAAGAA 1195
Query 1206 GAACAGAAGGTCGTAAAGGAAGGCTCTCGGTGACGGCGGAAGTATTCGAAGTCGCTCCTG 1265
|||||||||| || ||||| |||||||| |||||||||||||| ||||||||||||||||
Sbjct 1196 GAACAGAAGGCCGCAAAGGGAGGCTCTCAGTGACGGCGGAAGTTTTCGAAGTCGCTCCTG 1255
Query 1266 AAGTCTCTGTCGTGGAGTTCTGCAAAACCTCGGGGGATACGTTGGAGTATTACCTCTTCT 1325
|||||||||| || |||||||||||| |||| || ||||| |||||||||||||||||||
Sbjct 1256 AAGTCTCTGTTGTCGAGTTCTGCAAATCCTCCGGCGATACATTGGAGTATTACCTCTTCT 1315
Query 1326 GTGAGGATGACGTCAGACCAGCTCTTAAAGACATTGTATGGTCATGGCAAGGTGATGATG 1385
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 GTGAGGATGACGTCAGGCCAGCTCTTAAAGACATTGTATGGTCATGGCAAGGTGATGATG 1375
Query 1386 ATGAAGACGATGTTACCACTAATGATAATGTTGACACAAATGATAACAAAATAAATAATG 1445
|||||||||| ||||||||||||||||||||| |||| |||||||||||||||| ||||
Sbjct 1376 ATGAAGACGACGTTACCACTAATGATAATGTTAACACTAATGATAACAAAATAACTAATA 1435
Query 1446 TTTCATGAGCTGTAATAATTCACTTTTTGG--AATTGGATGTGCGAG-GCGAGACTGTCT 1502
||||||||||||||||| || | ||||| |||||||||||| || |||||||| |||
Sbjct 1436 TTTCATGAGCTGTAATATTTAAATTTTTTTTTAATTGGATGTGCAAGAGCGAGACTATCT 1495
Query 1503 TATTGTGAAATTGCA 1517
||| |||||||||||
Sbjct 1496 TATAGTGAAATTGCA 1510
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57211547990
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5