BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25100.1
Length=1231
Score E
Sequences producing significant alignments: (Bits) Value
Ahg899927 jgi|Araly1|899927|Al_scaffold_0004_577 1469 0.0
> Ahg899927 jgi|Araly1|899927|Al_scaffold_0004_577
Length=891
Score = 1469 bits (795), Expect = 0.0
Identities = 859/891 (96%), Gaps = 0/891 (0%)
Strand=Plus/Plus
Query 98 ATGGAATCTGAATGTTTGACACCAGAATGGGCATCTCAACCTTGTCTAATGGGTATCGAT 157
||||||||||| |||||||||||||||||| | ||||| ||||||||||||||||| ||
Sbjct 1 ATGGAATCTGATTGTTTGACACCAGAATGGTCTTCTCAGCCTTGTCTAATGGGTATTGAC 60
Query 158 GAAGCCGGAAGGGGTCCTGTTCTAGGTCCTATGGTTTATGGATGTATGTATTGTCCCATT 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAAGCCGGAAGGGGTCCTGTTCTAGGTCCTATGGTTTATGGATGTATGTATTGTCCCATT 120
Query 218 TCCTATCAGTCGTCTCTTGCTTCTCTCCATTTTGCAGATTCGAAGACTCTAAAAGAGGAG 277
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 TCCTATCAGTCTTCTCTTGCTTCTCTCCATTTTGCAGATTCAAAGACTCTAAAAGAGGAG 180
Query 278 AAAAGAGAAGAGTTATATGAAAGCTTAAAGCTTGACAAGTCACTTGGATGGGCTGTTGAT 337
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 181 AAAAGAGAAGAGTTATATGAAAACTTAAAGCTTGACAAGTCACTTGGATGGGCTGTTGAT 240
Query 338 GTCATTGATCCTAGGGAACTCTCAGCCAAGATGCTCGCAAAAAACAAGACTAATTTAAAT 397
||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 GTCATTGATCCCAGAGAACTCTCAGCAAAGATGCTCGCAAAAAACAAGACTAATTTAAAT 300
Query 398 GAGATTTCACATAACTCTGCAATGGGGCTTATCAAAAGGGTACTAGACATGGGAGTTCTT 457
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 301 GAGATTTCACATAACTCTGCAATGGGGCTAATCAAAAGGGTACTAGACATGGGAGTTCTT 360
Query 458 CTGACAGAGGCTTATCTGGATACCGTGGGAGATCCCGACAAGTACAGAATAAAATTGTCT 517
|| |||||||||||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct 361 CTAACAGAGGCTTATCTGGATACCGTGGGAGATCCTGAGAAGTACAGGATAAAATTGTCT 420
Query 518 GAGAGGTTTCCTTCGATCAAGTTCGTCGTTTCAAAGAAAGCTGACAGTCTATTTCCGATT 577
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 421 GAGAGGTTTCCTTCGATCAAGTTTGTCGTTTCAAAGAAAGCTGACAGTCTATTTCCTATT 480
Query 578 GTTAGTGGGGCAAGTATTGTGGCTAAGGTGACAAGAGACAGAGCGTTGAAAGAATGGTTG 637
|||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 481 GTTAGTGGAGCAAGTATTGTGGCCAAGGTGACAAGAGACAGAGCGTTGAGAGAATGGTTG 540
Query 638 GTAGAGGAAACCGGAGAAGATATAAATAGAAACTTTGGTTCTGGATATCCTGGAGATCCT 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GTAGAGGAAACCGGAGAAGATATAAATAGAAACTTTGGTTCTGGATATCCTGGAGATCCT 600
Query 698 GAGACAAAGGCGTGGTTAGTGCAACACAAACATTCTGTGTTTGGATTCCCATCACTGGTC 757
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 601 GAGACAAAGGCATGGTTAGTGCAACACAAACATTCTGTATTTGGATTCCCATCACTGGTC 660
Query 758 CGCTTCAGTTGGGGAACTTGCACTACACATTTGAAGGGCGAGGTTGAAGTTGCATGGGAA 817
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 661 CGCTTCAGTTGGGGAACTTGCACTGCACATTTGAAGGGCGAGGTTGCAGTTGCATGGGAA 720
Query 818 GCAGATGAAAATGAAGAGAGTGGTAATGGAAGTAGCAGCAAACGACAAGCGAAACTAAGC 877
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GCAGATGAAACCGAAGAGAGTGGTAATGGAAGTAGCAGCAAACGACAAGCGAAACTAAGC 780
Query 878 AGTTTTGGGTTCAAAACATGCGAGAAAAGAAGCGAAGAAATCGAGTCGAGTGGAAAAGGA 937
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 781 AGTTTTGGGTTCAAAACATGCGAGAAAAGGAGCGAAGAAATCGAATCGAGTGGAAAAGGG 840
Query 938 CGCTGCAAATTTCTCCAAGCTCGCAAAATCCAACAACTCACTCAGTTTTAG 988
|||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 841 CGCTGCAAATTTTTCCAAGCTCGCAAAATCCAACAACTCACTCAGTTTTAG 891
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45976237902
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5