BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25110.1
Length=1197
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932635 jgi|Araly1|932635|scaffold_400623.1 1208 0.0
> Ahg932635 jgi|Araly1|932635|scaffold_400623.1
Length=714
Score = 1208 bits (654), Expect = 0.0
Identities = 694/714 (97%), Gaps = 0/714 (0%)
Strand=Plus/Plus
Query 270 TGGTTTATCGGTCTGCTATTCGTGATGGCTTTAGGATTCTTCTGTCTCGCTATCTTCCTT 329
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TGGTTTATCGGTCTGCTCTTCGTGATGGCTTTAGGATTCTTCTGTCTCGCTATCTTCCTT 60
Query 330 TACCTAAGTCTCGATCCTGATTCCGGTTACACGTCTGCCTCCGCCGCTGCTTCTGGTAAA 389
|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 61 TACCTAAGTCTCGATCCTGATTCCGGTTACACAACTGCCTCCGCCGCCGCTTCTGGTAAA 120
Query 390 GAAGGTGTCGAGATTACTTATGGAAGTGCGATCAAGTTGATGCACGAGAAAACTAAATTT 449
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 121 GAAGGTGTCGAGATTACTTATGGAAGTGCGATTAAGCTGATGCACGAGAAAACTAAATTT 180
Query 450 CGATTACATTCTCACGATGTGCCGTATGGATCCGGCAGTGGTCAGCAATCAGTCACTGGT 509
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 181 CGATTGCATTCTCACGATGTGCCGTATGGATCCGGTAGTGGTCAGCAATCAGTCACTGGT 240
Query 510 TTTCCAGGCGTCGTTGATTCCAACAGCTATTGGATTGTTAAACCTGTGCCTGGGACAACA 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTTCCAGGCGTCGTTGATTCCAACAGCTATTGGATTGTTAAACCTGTGCCTGGGACAACA 300
Query 570 GAAAAGCAAGGTGATGCTGTCAAGAGTGGAGCAACCATTAGGTTGCAGCATATGAAGACC 629
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 301 GAAAAGCAAGGTGATGCTGTCAAGAGTGGAGCAACCATTAGATTGCAGCATATGAAGACC 360
Query 630 AGAAAATGGCTTCACAGTCACTTGCATGCATCTCCTATATCAGGGAACTTAGAGGTTAGC 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGAAAATGGCTTCACAGTCACTTGCATGCATCTCCTATATCAGGGAACTTAGAGGTTAGC 420
Query 690 TGCTTTGGAGATGATACAAATTCCGATACTGGGGATCACTGGAAGCTTATAATTGAAGGA 749
||||| ||||||||||||||||||||||| || |||||||||||||||||||| ||||||
Sbjct 421 TGCTTCGGAGATGATACAAATTCCGATACCGGTGATCACTGGAAGCTTATAATCGAAGGA 480
Query 750 AGTGGGAAGACATGGAAACAGGACCAAAGAGTCCGTCTTCAACACATAGACACTAGTGGC 809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AGTGGGAAGACATGGAAACAGGACCAAAGAGTCCGTCTTCAACACATAGACACTAGTGGC 540
Query 810 TACCTCCATAGCCATGACAAGAAGTACCAACGTATAGCTGGTGGTCAGCAAGAGGTGTGT 869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TACCTCCATAGCCATGACAAGAAGTACCAACGTATAGCTGGTGGTCAGCAAGAGGTGTGT 600
Query 870 GGAATTCGGGAGAAGAAGGCGGATAACATTTGGTTGGCAGCAGAAGGAGTCTACCTTCCC 929
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 601 GGAATTCGGGAGAAGAAGGCGGATAATGTTTGGTTGGCAGCAGAAGGAGTCTACATTCCC 660
Query 930 CTTAATGAGAGCAGCAAGTAAGGTTAAGAGTGAAAAAACTTCTCTGGAGGACTT 983
|||||||||||||||||||||||| ||||||| | ||||||||||||||||||
Sbjct 661 CTTAATGAGAGCAGCAAGTAAGGTGAAGAGTGTGATAACTTCTCTGGAGGACTT 714
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44680058724
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5