BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25120.1
Length=1143
Score E
Sequences producing significant alignments: (Bits) Value
Ahg899929 jgi|Araly1|899929|Al_scaffold_0004_579 1290 0.0
> Ahg899929 jgi|Araly1|899929|Al_scaffold_0004_579
Length=1353
Score = 1290 bits (698), Expect = 0.0
Identities = 986/1115 (88%), Gaps = 60/1115 (5%)
Strand=Plus/Plus
Query 55 TCGAACACCaaagaaacggagaagaagcagaggaagcggaagaaggattgcgaggaaaag 114
||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 61 TCGAACACCAAAGAAACAGAGAAGAAGCAGATGAAGCGGAAGAAGGATTGCAAGGAAAAG 120
Query 115 aataagaagaagcgaaagaaggattgcgaggaaaagCATGAGACGAAGGAAATGGAGTTA 174
|| |||||||||| ||| || | | || || ||| |||||||||||||||
Sbjct 121 CATGAGAAGAAGCG---GAA-GA-T-----G--AA--TTG-GACAAAGGAAATGGAGTTA 165
Query 175 GCGTGGAAACCTGAGGATTGTGCTAAGCCATTAGGCGAAGTGAGTAAGGTTACTGGGAAG 234
| ||||| ||||||||||||||| ||||||| || |||||||||||||||||||| |||
Sbjct 166 GAGTGGAGACCTGAGGATTGTGCGCAGCCATTCGGGGAAGTGAGTAAGGTTACTGGTAAG 225
Query 235 GGaaaaaagaaaaaaaGTCATTTCAAAACATTC-ACGTTTCGAGGCAAC-CAATATGCG- 291
|| ||||||||||||||||| ||| |||||| || ||||| ||| || ||||||| |
Sbjct 226 GGTGCAAAGAAAAAAAGTCATTACAAGACATTCAAC-TTTCGTGGC-ACACAATATG-GA 282
Query 292 CTGGAGGATTCAGTGCAATTGGTTCCAGACGACCCAAACAGCAAGCCCTATTGTGCCATT 351
|||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 283 CTGGAGGATTCAGTGCTATTGGTTCCAGACGACCCTAACAGCAAGCCCTATGGTGCCATT 342
Query 352 ATAAAGGATATTTATATACCAAACAAAGAAAAATACGTGAAACTTGCAGTCCATTGGTTT 411
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 343 ATAAAGGATATTTATATACCAAACAAAGAAAAATACGTGAAACTTTCAGTCCAGTGGTTT 402
Query 412 TATCGTCCAGAGGATGTGGATAAAAAACATGTTGGAAAATGGGAATCCAAAGATTCAAGA 471
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 403 TATCGCCCAGAGGATGTGGATAAAAAACATGTTGGAAAATGGGAATCAAAAGATTCAAGA 462
Query 472 AACCTGTTCTACAGTTTCCATCGTGATGAGGTGTTTGCTGAATCTGTGAAGCACAAGTGT 531
| ||| ||||||||||||||| | ||||| ||||||||||||||||||||| ||||||||
Sbjct 463 AGCCTATTCTACAGTTTCCATTGCGATGAAGTGTTTGCTGAATCTGTGAAGTACAAGTGT 522
Query 532 GTTGTGAATTTCGTGCCGGAAAATAAGCAAATCCCAAACCGTAGAGAGCATCCTTGCTTC 591
||||||||||||||||| || ||||||||||||||||||||||| ||||| ||| |||||
Sbjct 523 GTTGTGAATTTCGTGCCAGAGAATAAGCAAATCCCAAACCGTAGTGAGCAACCTGGCTTC 582
Query 592 ATCGTGCAAAATGTTTATGATTTTGTTAAGAAGAAGGTGAGGAAGTTCACTGATAA-GAA 650
||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 583 ATCGTGCAACATGTTTATGATTTTGTTAAGAAGAAGCTGAGGAAGTTCACTGATAATGT- 641
Query 651 CTTTGACGTGCACCAAAAGAATGAGATTGATCGTCTTGTGGCAAAGACGAGTTTACGCCT 710
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
Sbjct 642 CTTTGACGTGCACCAAAAGGATGAGATTGATCGTCTTGTGGCAAAGACGATTTTACGAGT 701
Query 711 TGGTGATCTTCCTGACATTGAGAAAGACCAAGTGACTAAGACTTCAA-AGGGTAAAAGAA 769
||||||||||||||||||||||||||| ||| |||||||| ||||| | | ||||||||
Sbjct 702 TGGTGATCTTCCTGACATTGAGAAAGATCAAAAGACTAAGAATTCAAGAAG-TAAAAGAA 760
Query 770 CTGTTCAGA--GA--A-A-G--A-GTCCTAA-A-A------CC-A--GT----ACGGTTT 805
|||||||| || | | | | | |||| | | || | | |||||||
Sbjct 761 TTGTTCAGAAAGAGTATATGGGAAGAGCTAAGAGAAGGAGTCCTAAAGCCGGGACGGTTT 820
Query 806 ATAAGTCGATCTTGGAGGATTTTGATTTGTTAACCGGTGATTCGGATCGTGACAAGCGAT 865
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 821 ATAAGTCGATCTTGGAGGATTTTGATTTGTTAACCGGTGATTCGGATCGTGACAAGGGAT 880
Query 866 TGGGGGAGCTCCTGGAAGCAGTTAAGCACGAGTGTCGTACAAGTAAGAAGAAAGGGGCTC 925
||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 881 TGGAGGAGCTCCTGGAAGCAGTTAAGCACGAGTGTCGTACAACTAAGAAGAAACAAGCTC 940
Query 926 GTGAT-GATGATTCTTACTGGCCAGATGATGTTGTTCCGGTGGTTCGAGCTCTTGAGCAT 984
||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 941 GTGATAG-TGATTTTTACTGGCCAGATGATGTTGTTCCGGTGGTTCGAGCTCTTGAGCAG 999
Query 985 GTCTTT-TATGATTCTATGGCAGAAGATATGTCAAAGTATCA-TCACAAGTTGGAGATTC 1042
|| ||| ||||||||| |||||||||||||||||||||| || ||||||||||||||||
Sbjct 1000 GT-TTTATATGATTCTTTGGCAGAAGATATGTCAAAGTA-CAATCACAAGTTGGAGATTA 1057
Query 1043 TGGTTGATGAA-CTCAAGGTTAGTTTAATTCCTTTCA-CTCATCCATCCTAtatttttat 1100
|||| ||| || |||||||||||||| |||||||| | ||| |||||||||||||||| |
Sbjct 1058 TGGTCGAT-AATCTCAAGGTTAGTTTTATTCCTTT-ATCTCCTCCATCCTATATTTTTCT 1115
Query 1101 ttttgttttgcatgttcttgatttctatttatttt 1135
|||||||||||||||||||| ||||||||| ||||
Sbjct 1116 TTTTGTTTTGCATGTTCTTGTTTTCTATTT-TTTT 1149
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42621421206
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5