BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25130.1
Length=1509
Score E
Sequences producing significant alignments: (Bits) Value
Ahg344110 jgi|Araly1|344110|fgenesh1_pg.C_scaffold_4000452 1736 0.0
Ahg491546 jgi|Araly1|491546|fgenesh2_kg.7__979__AT4G31890.1 137 2e-31
> Ahg344110 jgi|Araly1|344110|fgenesh1_pg.C_scaffold_4000452
Length=1398
Score = 1736 bits (940), Expect = 0.0
Identities = 1274/1428 (89%), Gaps = 51/1428 (4%)
Strand=Plus/Plus
Query 42 ATGGCGAAGTGTCACCGGAACAATGTTGATCCTCTCATTCTCCATCGTATTCCCTCCGCT 101
||||| ||||||||||| |||||||| ||| |||| || || || ||||| |||||||||
Sbjct 1 ATGGCAAAGTGTCACCGTAACAATGTAGATTCTCTTATCCTTCACCGTATACCCTCCGCT 60
Query 102 TCTTCTTCCTCTT--T----ATCCGGAAACACCTTCTCCGGATCGTCATTGCGCAGGATC 155
|||||||| |||| | ||||||||||| ||||||||||| |||||||||||||||
Sbjct 61 TCTTCTTCTTCTTCCTCCGCCTCCGGAAACACTTTCTCCGGATCATCATTGCGCAGGATC 120
Query 156 ATCTTCGACGCCATTAGTTGCGGCGGTAGCTCTCGTTACCGACGTGAACTCCGAGAAGAA 215
||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 121 ATCTTCGACGCAATTAGCTGCGGCGGTAGCTCTCGTTACCAACGTGAACTCCGAGAAGAA 180
Query 216 GACGACGAAGGTTG-TTCGAAATCGACAATC-ATCGGAGAGGATTCAATGAGGAAACCGG 273
||||||||| | || ||| ||||||| || | ||||||||||||| | |||||| | |
Sbjct 181 GACGACGAA-GATGCTTCCAAATCGATAA-CAATCGGAGAGGATTTAGCAAGGAAATCAG 238
Query 274 AGAAGCTCAGCGATCTGTTAAACTTAGCAGTGATTGAGAGTGGTGTAGAGACCAAGAAGA 333
||||||| | ||||||||||||||||| ||||| ||||||| ||| ||||| |||||||
Sbjct 239 AGAAGCTTTGTGATCTGTTAAACTTAGCGGTGATAGAGAGTGTTGTTGAGACGAAGAAGA 298
Query 334 AGGAGGAAACACTTGAGATTCTAAAACGTGTTGTTAAAGATTTACAAgcggaggcggagg 393
|||||||||||||||||||||||||||||||||||| |||||||| | | | |||||
Sbjct 299 AGGAGGAAACACTTGAGATTCTAAAACGTGTTGTTAGAGATTTAC-A----A-GTGGAGG 352
Query 394 cggaggcggaggcggcggagaagaaaatagcggcggcTAGTGAGGTTAGGTTGTTAGCAA 453
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 CGGA----GA--CGGCGGAGAAGAAAATAGCGGCGGCTAGTGAGGTTAGGTTGTTAGCAA 406
Query 454 AAGATGATATAGAGGCGAGAGTAACACTTGCGATGCTTGGTGCGATCCCGCCGTTGGTTA 513
||||||||| ||||||||||| |||||||||||||| |||||||| || ||||||||||
Sbjct 407 AAGATGATACGGAGGCGAGAGTGACACTTGCGATGCTCGGTGCGATTCCACCGTTGGTTA 466
Query 514 GTATGATCGACGACGAGTCACAAAGCGAAGATGCGCTAATCGCTTCGCTTTACGCTCTTC 573
||||||| |||||| | | | | ||| | | |||||||||||||||||||||||
Sbjct 467 GTATGAT---CGACGA--C-C--A-C---GATTCACAAATCGCTTCGCTTTACGCTCTTC 514
Query 574 TCAACCTCGGAATCGGCAATGATGTGAACAAAGCAGCCATTGTAAAAGCAGGTGTTGTTC 633
|||| |||||||||||||| ||||||||||||||||||||||| ||||||| | |||||
Sbjct 515 TCAATCTCGGAATCGGCAACGATGTGAACAAAGCAGCCATTGTTAAAGCAGAAGCTGTTC 574
Query 634 ACAAAATGTTAAAGCTAGTTGAGTCATCAAAACCTCCTAATCAAGCAATCGCGGAGGCTA 693
|||||||| | |||||| ||||||||||||| ||||| |||||||| || |||||||||
Sbjct 575 ACAAAATGCTGAAGCTAATTGAGTCATCAAAGCCTCCAAATCAAGCGATTTCGGAGGCTA 634
Query 694 TTGTCGCTAATTTCCTAGGGTTAAGCGCGTTGGATTCCAACAAACCGATCATCGGTTCCT 753
||||||| |||||||||||| ||||||| || ||| |||| |||||||||||||||||||
Sbjct 635 TTGTCGCGAATTTCCTAGGGCTAAGCGCATTAGATGCCAATAAACCGATCATCGGTTCCT 694
Query 754 CGGGTGCAATCATCTTTCTAGTGAAAACGCTT-AAAAACTTCGAGGAAACTAGCAGCTCA 812
|||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 695 CGGGTGCAATTATCTTTCTAGTGAAAAC-TTTGAAAAACTTCGAGGAAACTAGCAGCTCA 753
Query 813 CAAGCTAGAGAAGACGCTCTTCGAGCTCTTTACAACCTTTCAAT-ATATCACCAAAACGT 871
|||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||
Sbjct 754 CAAGCTAGAGAAGACGCTCTTCGAGCTCTTTACAACCTTTCAATCA-ATCAACAAAACGT 812
Query 872 TTCCTTCATACTCGAAACCGATCTGATTCCTTTTCTCTTGAACACGTTGGGAGACATGGA 931
|| |||||| || ||||| ||| ||||||| | |||||||||||| ||||||||||||||
Sbjct 813 TTTCTTCATCCTTGAAACAGATTTGATTCCATATCTCTTGAACACATTGGGAGACATGGA 872
Query 932 AGTGAGCGAGAGGATTCTCGCCATCTTAACCAATGTAGTATCAGTCCCCGAAGGAAGGAA 991
||| |||||||||||||||||||||||||||||||| ||||| ||||| |||||| ||||
Sbjct 873 AGTAAGCGAGAGGATTCTCGCCATCTTAACCAATGTGGTATCCGTCCCTGAAGGACGGAA 932
Query 992 AGCGATCGGGGAG-GTGGTTGAAGCGTTTCCCATATTGGTAGATGTATTGAACTGGAATG 1050
|||||| |||| | |||||||||||| |||||||||||||||||||| |||| |||||||
Sbjct 933 AGCGATAGGGG-GTGTGGTTGAAGCGCTTCCCATATTGGTAGATGTACTGAATTGGAATG 991
Query 1051 ATTCAATAAAATGTCAAGAGAAAGCGGTTTACATCCTTATGTTAATGGCTCATAAAGGTT 1110
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 992 ATTCGGTAAAATGTCAAGAGAAAGCGGTTTACATCCTTATGTTAATGGCTCATAAAGGGT 1051
Query 1111 ATGGAGATCGTAATGCGATGATTGAAGCGGGTATTGAATCTTCATTGCTTGAACTAACAC 1170
|||||||||| || || ||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 1052 ATGGAGATCGGAAAGCAATGATCGAAGCGGGTATTGAATCTTCATTGCTTGAACTAATAC 1111
Query 1171 TTGTAGGAAGTCCATTGGCGCAAAAGCGAGCCTCGAGGGTACTAGAGTGTTTGAGAGTGG 1230
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
Sbjct 1112 TTGTAGGAAGTCCATTGGCGCAAAAGCGAGCCTCAAGGGTACTAGAGTGTTTGAGAATTG 1171
Query 1231 TGGATAAAGGGAAGCAAGTCTCAGCTCCGATTTACGGAA---CTTCTTC------ATTGG 1281
|||| |||||||||||||||||||||||| |||| |||| ||||||| |||||
Sbjct 1172 TGGACAAAGGGAAGCAAGTCTCAGCTCCGGTTTATGGAATATCTTCTTCTTCTTCATTGG 1231
Query 1282 GAAGAGAGAGAGGTCATGATCTTAGGATGACG-GATGAGAGAAAAGCAGTGAAGCAGTTA 1340
| ||||||||||| |||||||| ||||||| | |||||||||||||||||||||||||||
Sbjct 1232 GTAGAGAGAGAGGGCATGATCTAAGGATGA-GTGATGAGAGAAAAGCAGTGAAGCAGTTA 1290
Query 1341 GTGCAACAGAGTTTACAGAGTAACATGAAGAGGATTGTGAAGAGAGCTAATTTGCCACAT 1400
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1291 GTGCAACAGAGTTTACAGAGCAACATGAAGAGGATTGTGAAGAGAGCTAATTTACCACAT 1350
Query 1401 GACTTTGTTACTACTTCACAGCATTTCTCAAAGAGCTTAACTTTCTGA 1448
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1351 GACTTTGTTACTACTTCACAGCATTTCTCAAAGAGCTTAACTTTCTGA 1398
> Ahg491546 jgi|Araly1|491546|fgenesh2_kg.7__979__AT4G31890.1
Length=1945
Score = 137 bits (74), Expect = 2e-31
Identities = 107/122 (88%), Gaps = 5/122 (4%)
Strand=Plus/Plus
Query 1307 GATGACG-GATGAGAGAAAAGCAGTGAAGCAGTTAGTGCAACAGAGTTTACAGAGTAACA 1365
||||| | || ||||| ||||| |||||||||||||||||||||||||||||||| || |
Sbjct 1418 GATGA-GCGAAGAGAGGAAAGCCGTGAAGCAGTTAGTGCAACAGAGTTTACAGAGCAATA 1476
Query 1366 TGAAGAGGATTGTGAAGAGAGCTAATTTGCCACATGACTTTGTTACTACTTCACAGCATT 1425
||||||| || ||||||||||||||||||||||| | ||||||| | ||||| ||||||
Sbjct 1477 TGAAGAGAATCGTGAAGAGAGCTAATTTGCCACAAGGCTTTGTT-C--CTTCAGAGCATT 1533
Query 1426 TC 1427
||
Sbjct 1534 TC 1535
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56487833335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5