BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25170.1
Length=4402
Score E
Sequences producing significant alignments: (Bits) Value
Ahg344116 jgi|Araly1|344116|fgenesh1_pg.C_scaffold_4000458 3644 0.0
Ahg328538 jgi|Araly1|328538|fgenesh1_pm.C_scaffold_7000765 1110 0.0
> Ahg344116 jgi|Araly1|344116|fgenesh1_pg.C_scaffold_4000458
Length=4200
Score = 3644 bits (1973), Expect = 0.0
Identities = 2195/2304 (95%), Gaps = 8/2304 (0%)
Strand=Plus/Plus
Query 1880 AGTTTCAGCATATGCTGGACT-TACTTGAAGACTACTGTACCCATAAGAAATGGCAGTAC 1938
|||||||||| |||||||| | ||||||||||||||||| | ||||||||||| | |||
Sbjct 1901 AGTTTCAGCACATGCTGGA-TCTACTTGAAGACTACTGTTCTTATAAGAAATGGAACTAC 1959
Query 1939 GAGCGAATTGATGGAAAGGTTGGCGGAGCTGAGCGGCAAATACGCATAGATCGGTTCAAT 1998
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1960 GAGCGAATTGATGGAAAGGTTGGCGGAGCTGAGCGGCAAATACGCATAGATCGGTTCAAT 2019
Query 1999 GCCAAAAATTCTAACAAGTTTTGTTTTTTGCTCTCCACAAGAGCTGGTGGCTTAGGAATA 2058
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2020 GCCAAAAACTCTAACAAATTTTGTTTTTTGCTCTCCACAAGAGCTGGTGGCTTAGGAATA 2079
Query 2059 AATCTTGCAACGGCTGATACAGTAATCATTTATGACAGTGACTGGAATCCTCATGCTGAT 2118
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2080 AATCTTGCAACGGCTGATACAGTAATAATTTATGACAGTGACTGGAATCCTCATGCTGAT 2139
Query 2119 CTTCAAGCAATGGCTAGAGCTCATCGACTTGGCCAAACAAATAAGGTGATGATTTATAGG 2178
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2140 CTTCAGGCAATGGCTAGAGCTCATCGACTTGGCCAAACAAATAAGGTGATGATTTACCGA 2199
Query 2179 CTCATAAACCGAGGCACCATTGAAGAAAGGATGATGCAATTGACTAAAAAGAAAATGGTT 2238
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2200 CTCATAAACCGAGGCACCATTGAAGAAAGGATGATGCAATTAACTAAAAAGAAAATGGTT 2259
Query 2239 CTAGAGCATCTTGTTGTTGGGAAACTCAAAACACAAAACATTAATCAGGAAGAGTTAGAT 2298
|||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||
Sbjct 2260 CTAGAGCATCTTGTCGTCGGGAAACTAAAAACACAAAACATTAATCAGGAAGAGTTAGAT 2319
Query 2299 GACATCATCAGGTATGGATCAAAGGAGCTTTTTGCTAGTGAAGATGATGAAGCAGGAAAG 2358
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2320 GACATCATCAGGTATGGATCAAAGGAGCTTTTTGCTAGTGAAGATGACGAAGCAGGAAAG 2379
Query 2359 TCTGGAAAAATTCATTATGATGATGCGGCTATAGACAAATTGCTTGATCGTGATCTCGTG 2418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2380 TCTGGAAAAATTCATTATGATGATGCGGCTATAGACAAATTGCTTGATCGTGATCTCGTG 2439
Query 2419 GAGGCAGAGGAAGTCTCAGTGGATGATGAAGAGGAGAATGGATTCTTAAAGGCTTTCAAG 2478
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2440 GAGGCTGAGGAGGTCTCAGTGGATGATGAAGAGGAGAATGGATTCTTAAAGGCTTTCAAG 2499
Query 2479 GTGGCTAATTTTGAATATATAGATGAAAATGAGGCAGCAGCATTAGAGGCACAGAGAGTC 2538
||||| |||||||| ||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 2500 GTGGCAAATTTTGAGTATATTGATGAAAACGAGGCAGCAGCATTAGAGGCACAGAGAGTC 2559
Query 2539 GCTGCTGAAAGCAAATCTTCAGCAGGCAATTCTGATAGAGCAAGTTATTGGGAAGAGTTG 2598
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2560 GCTGCTGAAAGCAAATCTTCAGCAGGCAGTTCTGATAGAGCAAGTTATTGGGAAGAGTTG 2619
Query 2599 TTAAAAGATAAATTTGAGCTGCACCAGGCTGAGGAGCTTAATGCTCTTGGAAAAAGGAAG 2658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2620 TTAAAAGATAAATTTGAGCTGCACCAGGCTGAGGAGCTTAATGCTCTTGGAAAAAGGAAG 2679
Query 2659 AGAAGTCGCAAGCAGTTGGTATCCATTGAAGAAGATGATCTTGCTGGTTTGGAAGATGTG 2718
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2680 AGAAGTCGCAAGCAGTTGGTATCCATTAAAGAAGATGATCTTGCTGGTTTGGAAGATGTG 2739
Query 2719 AGCTCTGATGGAGATGAAAGTTATGAAGCTGAGTCAACAGATGGTGAAGCAGCAGGACAA 2778
||||||||||||||||||||||||||||| ||||||||||||| |||| |||| ||||||
Sbjct 2740 AGCTCTGATGGAGATGAAAGTTATGAAGCCGAGTCAACAGATGCTGAAACAGCGGGACAA 2799
Query 2779 GGAGTTCAGACGGGTCGACGGCCGTACAGAAGAAAGGGTCGCGATAATTTGGAACCAACT 2838
| ||||||||||||||||||||| || |||||||||||||||||||| | ||| |||| |
Sbjct 2800 GAAGTTCAGACGGGTCGACGGCCATATAGAAGAAAGGGTCGCGATAACTCGGAGCCAATT 2859
Query 2839 CCGTTGATGGAAGGTGAGGGGAGATCTTTCAGAGTACTGGGTTTCAACCAGAGTCAAAGG 2898
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2860 CCTTTGATGGAAGGCGAGGGGAGATCTTTCAGAGTACTGGGTTTCAACCAGAGTCAAAGG 2919
Query 2899 GCCATTTTTGTACAGACTTTGATGAGGTATGGAGCTGGCAATTTTGATTGGAAGGAGTTT 2958
||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||
Sbjct 2920 GCCATTTTTGTACAGACGTTGATGAGGTATGGAGCTGGTAATTTCGATTGGAAGGAGTTT 2979
Query 2959 GTTCCTCGCTTAAAGCAGAAGACCTTTGAAGAAATAAATGAATATGGAATACTCTTCTTG 3018
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 2980 GTTCCTCGCTTAAAGCAGAAGACCTATGACGAAATAAATGAATATGGAATACTCTTCTTG 3039
Query 3019 AAGCACATTGCTGAAGAAATAGACGAGAATTCTCCAACCTTTTCAGATGGTGTGCCCAAG 3078
||||||||||||||||| || |||||||| |||||||| ||||||||||||||||| |||
Sbjct 3040 AAGCACATTGCTGAAGATATTGACGAGAACTCTCCAACATTTTCAGATGGTGTGCCAAAG 3099
Query 3079 GAAGGACTTAGAATAGAAGATGTTCTAGTCAGAATTGCTCTTCTGATACTAGTTCAGGAG 3138
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 3100 GAAGGACTTAGAATAGAAGATGTTCTAGTCAGAATTGCTCTTCTGATACTAGTACAGGAG 3159
Query 3139 AAGGTGAAATTTGTAGAAGATCATCCAGGGAAACCTGTTTTCCCCTCTCGCATTCTTGAA 3198
||| ||||||||||||||||||||||| ||||||||||||| | || ||||||||||||
Sbjct 3160 AAGACGAAATTTGTAGAAGATCATCCAGCGAAACCTGTTTTCACGTCCCGCATTCTTGAA 3219
Query 3199 AGATTCCCCGGACTGAGAAGTGGAAAAATTTGGAAGGAGGAACATGACAAGATAATGATA 3258
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 3220 AGATTCCCCGGATTGAGAAGTGGAAAAGTTTGGAAGGAGGAACATGACAAGATAATGATA 3279
Query 3259 CGTGCTGTTTTAAAGCATGGGTACGGACGGTGGCAAGCTATTGTTGATGACAAAGAGTTG 3318
||||||||||||||||||||||| || || |||||||||||||||||||||||||||||
Sbjct 3280 CGTGCTGTTTTAAAGCATGGGTATGGGCGATGGCAAGCTATTGTTGATGACAAAGAGTTA 3339
Query 3319 GGGATCCAAGAGCTTATCTGCAAAGAATTGAATTTCCCTCACATAAGTTTGTCTGCTGCT 3378
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 3340 GGGATCCAAGAGCTTATCTGCAAGGAATTGAACTTCCCTCACATAAGTTTGTCTGCTGCT 3399
Query 3379 GAACAAGCTGGTTTGCAGGGGCAGAATGGTAGTGGGGGCTCTAATCCGGGAGCACAGACT 3438
||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 3400 GAACAAGCTGGCTTGCAGGGGCAGAATGGTAGTGGGGGCTCCAATTTGGGAGCACAGACT 3459
Query 3439 AACCAGAATCCTGGAAGCGTTATTACTGGGAACAATAATGCTTCTGCTGATGGGGCTC-A 3497
||||||||| ||||||| | |||||||||||||||||||||||||| |||||||| || |
Sbjct 3460 AACCAGAATTCTGGAAGTGGTATTACTGGGAACAATAATGCTTCTGGTGATGGGG-TCCA 3518
Query 3498 AGTAAACTCGATGTTCTATTATCGGGACATGCAGAGACGACTTGTTGAGTTTGTGAAAAA 3557
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 3519 AGTAAACTCGATGTTCTACTATCGGGACATGCAGAGACGACTTGTTGAGTTTGTGAAAAA 3578
Query 3558 GCGAGTTCTGCTTTTGGAGAAGGCGATGAATTATGAATACGCAGAGGAATATTATGGACT 3617
||||||||||||||||||||| ||| ||||||||||||| |||||||| |||||||||||
Sbjct 3579 GCGAGTTCTGCTTTTGGAGAAAGCGTTGAATTATGAATATGCAGAGGATTATTATGGACT 3638
Query 3618 TGGTGGCTCATCATCTATCCCTACTGAAGAACCAGAAGCTGAACCAAAGATCGCTGACAC 3677
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3639 TGGTGGCTCGTCATCTATCCCTACTGAAGAACCAGAAGCTGAACCAAAGATCGCTGACAC 3698
Query 3678 AGTGGGAGTGAGCTTTATTGAGGTTGATGATGAAATGCTTGATGGACTTCCTAAGACTGA 3737
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 3699 AGTGGGAGTGAGCTTTATTGAGGTCGATGATGAAATGCTTGATGGACTTCCTAAGACTGA 3758
Query 3738 TCCTATCACTTCAGAAGAAATTATGGGGGCTGCTGTTGACAACAACCAAGCGCGGGTCGA 3797
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 3759 TCCCATCACTTCAGAAGAAATTATGGTGGCTGCTGTTGACAACAACCAAGCGCGGGTCGA 3818
Query 3798 AATAGCTCAACATTATAACCAGATGTGCAAACTTCTTGATGAGAACGCTCGGGAATCAGT 3857
||||||||| ||||||||||||||||||||| || || ||||||||||||| |||||| |
Sbjct 3819 AATAGCTCAGCATTATAACCAGATGTGCAAAGTTTTTAATGAGAACGCTCGTGAATCACT 3878
Query 3858 CCAAGCATATGTAAACAACCAACCACCGAGTACCAAGGTGAATGAGAGCTTCCGTGCACT 3917
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 3879 CCAAGCATATGTAAACAACCAACCACCAAGTACCAAGGTGAATGAGAGCTTCCGTGCACT 3938
Query 3918 CAAATCTATCAATGGTAACATTA-ACACAATCCTTTCGATTACATCT-GATCAATCCAAG 3975
| ||||||||||||||||||||| | || |||||||||| | || || || ||||| |||
Sbjct 3939 CGAATCTATCAATGGTAACATTAGA-ACGATCCTTTCGACTCCA-CTTGACCAATCAAAG 3996
Query 3976 TCACATGAAGACGACACCAAGCCAGACCTAAACAATGTTGAGATGAAGGACACGGCCGAA 4035
||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 3997 TCACATGAAAACGACACCAAGCCAAACCTAAACAATGTTGACATGAAGGACACGGCCGAA 4056
Query 4036 GAAACAAAACCGTTAAGAGGTGGCGTCGTCGATCTGAATGTGGTGGAGGGAGAGGAGAAC 4095
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 4057 GAAACAAAACCGTTAAGAGGTGGCGTCGTCGATCTGAATGTGATGGAGGGAGAGGAGAAC 4116
Query 4096 ATTGCTGAAGCTAGTGGAAGTGTTGATGTAAAAATGGAAGAAGCCAAAGAAGAAGAGAAG 4155
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 4117 ATTTCTGAAGCTAGTGGAAGTGTTGATGTGAAAATGGAAGAAGCCAAAGAAGAAGAGAAG 4176
Query 4156 CCAAAGAACATGGTCGTTGATTGA 4179
||||||||||||||||| ||||||
Sbjct 4177 CCAAAGAACATGGTCGTGGATTGA 4200
Score = 3186 bits (1725), Expect = 0.0
Identities = 1844/1903 (97%), Gaps = 2/1903 (0%)
Strand=Plus/Plus
Query 25 ATGAGTAGTTTGGTGGAGAGGCTTCGCATACGATCTGATAGGAAACCAGTTTATAACCTA 84
|||||||||||||||||| ||||||| |||||||| ||||||||||| |||||||| |||
Sbjct 1 ATGAGTAGTTTGGTGGAGCGGCTTCGTATACGATCAGATAGGAAACCGGTTTATAATCTA 60
Query 85 GATGATTCTGATGATGACGACTTCGTTCCTAAAAAAGATCGAACCTTTGAGCAAGTCGAG 144
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 61 GATGATTCTGATGATGACGACTTCGTTCCTAAAAAAGATCGGACCTTGGAGCAAGTCGAG 120
Query 145 GCTATTGTCAGAACTGATGCGAAAGAAAATGCATGTCAGGCTTGTGGGGAAAGTACTAAT 204
||||||||||||||||||||||||||||||||||| ||||||||||| |||||| | |||
Sbjct 121 GCTATTGTCAGAACTGATGCGAAAGAAAATGCATGCCAGGCTTGTGGAGAAAGTGCAAAT 180
Query 205 CTTGTAAGCTGCAATACATGCACTTATGCGTTCCATGCTAAATGCTTAGTTCCACCTCTT 264
|||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||
Sbjct 181 CTTGTAAGCTGCAATACATGTACGTATGCGTTCCATGCTAAATGCTTAGTTCCGCCTCTT 240
Query 265 AAAGATGCTTCCGTGGAAAATTGGAGATGCCCTGAATGTGTTAGTCCTCTTAACGAGATA 324
||||| || || |||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 241 AAAGACGCGTCAGTGGAAAATTGGAGATGCCCTGAATGCGTTAGTCCTCTTAATGAGATA 300
Query 325 GATAAGATATTGGATTGTGAAATGCGTCCTACAAAATCTAGTGAACAAGGTTCCTCCGAT 384
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GATAAGATATTGGACTGTGAAATGCGTCCTACAAAATCTAGTGAACAAGGTTCCTCCGAT 360
Query 385 GCGGAACCGAAGCCAATTTTTGTGAAACAGTATCTCGTGAAGTGGAAGGGATTATCATAC 444
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GCGGCACCAAAGCCAATTTTTGTGAAACAGTATCTCGTGAAGTGGAAGGGATTATCATAC 420
Query 445 CTTCACTGCTCTTGGGTGCCTGAGAAGGAGTTCCAGAAGGCTTATAAGTCAAATCATCGT 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CTTCACTGCTCTTGGGTGCCTGAGAAGGAGTTCCAGAAGGCTTATAAGTCAAATCATCGT 480
Query 505 TTAAAAACCAGAGTGAACAATTTTCACCGTCAAATGGAGTCAT-TCAATAACAGCGAAGA 563
||||||||||| |||||||||||||||||||||||||| || | ||||||||||||||||
Sbjct 481 TTAAAAACCAGGGTGAACAATTTTCACCGTCAAATGGAATC-TGTCAATAACAGCGAAGA 539
Query 564 TGATTTTGTTGCCATACGTCCTGAGTGGACCACTGTTGATCGGATTCTTGCCTGCAGAGA 623
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TGATTTTGTTGCCATTCGTCCTGAGTGGACCACTGTTGATCGGATTCTTGCCTGCAGAGA 599
Query 624 GGAAGATGGGGAGCTGGAATATCTTGTCAAATATAAAGAGCTATCCTATGATGAATGTTA 683
||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 600 GGAAGATGGTGAGCTGGAATATCTTGTGAAATATAAAGAGCTATCTTATGATGAATGTTA 659
Query 684 TTGGGAGTCAGAATCAGACATCTCAACCTTCCAGAATGAAATTCAAAGGTTCAAGGATGT 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TTGGGAGTCAGAATCAGACATCTCAACCTTCCAGAATGAAATTCAAAGGTTCAAGGATGT 719
Query 744 AAATTCTAGAACTCGCAGAAGTAAAGATGTTGACCATAAAAGAAATCCCAGAGACTTTCA 803
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AAATTCTAGAACTCGCAGGGGTAAAGATGTTGACCATAAAAGAAATCCCAGAGACTTTCA 779
Query 804 ACAGTTTGATCATACTCCTGAATTCCTCAAAGGCTTGTTACATCCATACCAGCTTGAGGG 863
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 780 ACAGTTTGATCATACTCCTGAATTCCTCAAAGGCTTGTTGCATCCATACCAGCTTGAGGG 839
Query 864 ACTTAATTTTTTGCGGTTCTCGTGGTCAAAACAGACGCATGTAATCCTTGCTGATGAAAT 923
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 ACTTAATTTTTTGCGGTTCTCGTGGTCAAAACAGACGCATGTAATCCTTGCTGATGAAAT 899
Query 924 GGGACTAGGCAAGACAATTCAAAGCATTGCCCTTTTAGCTTCACTTTTTGAGGAGAACCT 983
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GGGACTAGGCAAAACAATTCAAAGCATTGCCCTTTTAGCTTCACTTTTTGAGGAGAACCT 959
Query 984 CATTCCGCATTTGGTAATTGCTCCTCTATCGACTCTGCGTAACTGGGAGAGAGAGTTTGC 1043
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 CATTCCGCATTTGGTAATTGCTCCTCTATCGACTCTGCGTAACTGGGAGAGAGAGTTTGC 1019
Query 1044 CACATGGGCCCCACAGATGAACGTGGTTATGTATTTTGGCACTGCGCAAGCTCGAGCAGT 1103
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 1020 CACATGGGCCCCACAGATGAATGTGGTTATGTATTTTGGCACTTCGCAAGCTCGAGCAGT 1079
Query 1104 TATCAGAGAACATGAGTTTTACTTATCgaaagatcaaaaaaagatcaagaaaaagaaatc 1163
|||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||
Sbjct 1080 TATCAGAGAACATGAGTTTTACTTTTCGAAAGATAAAAAAAAAATCAAGAAAAAGAAATC 1139
Query 1164 tggacaaataagtagcgaaagcaagcaaaaaagaatcaagTTTGATGTCCTCCTCACATC 1223
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1140 TGGACAAATCAGTAGCGAAAGCAAGCAAAAAAGAATCAAGTTTGACGTCCTCCTCACATC 1199
Query 1224 GTATGAGATGATCAACCTAGATTCAGCAGTTCTAAAACCAATTAAGTGGGAGTGCATGAT 1283
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 1200 GTATGAGATGATCAACCTAGATACAGCAGTTCTGAAACCAATTAAGTGGGAGTGCATGAT 1259
Query 1284 TGTTGATGAAGGTCATCGACTGAAAAATAAGGATTCAAAGCTGTTCTCTTCATTGACACA 1343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 TGTTGATGAAGGTCATCGACTGAAAAATAAGGATTCAAAGCTGTTCTCTTCATTGACACA 1319
Query 1344 GTATTCAAGTAACCACCGTATTCTTCTGACAGGAACACCACTTCAGAACAACTTGGATGA 1403
||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 GTATTTAAGTAATCATCGTATTCTTCTGACAGGAACACCACTTCAGAACAACTTGGATGA 1379
Query 1404 ACTTTTCATGCTCATGCATTTTCTTGATGCGGGGAAGTTTGGAAGTTTGGAGGAGTTCCA 1463
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 ACTTTTCATGCTAATGCATTTTCTTGATGCGGGGAAGTTTGGAAGTTTGGAGGAGTTCCA 1439
Query 1464 GGAGGAGTTCAAAGATATTAATCAAGAGGAGCAGATCTCAAGGTTGCACAAAATGTTGGC 1523
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1440 GGAGGAGTTCAAAGATATTAATCAAGAGGAACAGATCTCAAGATTGCACAAAATGTTGGC 1499
Query 1524 TCCACATTTGCTCAGAAGGGTaaaaaaaGACGTAATGAAAGACATGCCCCCCAAAAAGGA 1583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 TCCACATTTGCTCAGAAGGGTAAAAAAAGACGTAATGAAAGACATGCCCCCCAAAAAGGA 1559
Query 1584 GCTCATTTTGCGTGTTGATCTGAGCAGTCTGCAGAAAGAATATTACAAAGCTATTTTTAC 1643
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1560 ACTCATTTTGCGTGTTGATCTGAGCAGCCTGCAGAAAGAATATTACAAAGCTATTTTTAC 1619
Query 1644 CCGTAATTATCAAGTATTGACAAAAAAGGGAGGTGCTCAAATTTCCCTTAATAACATTAT 1703
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1620 CCGTAATTATCAAGTATTGACTAAAAAGGGAGGTGCTCAAATTTCCCTTAATAACATTAT 1679
Query 1704 GATGGAATTACGAAAAGTATGCTGCCATCCTTATATGCTAGAGGGTGTTGAGCCAGTTAT 1763
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 1680 GATGGAATTACGAAAAGTATGCTGCCATCCTTATATGCTGGAGGGTGTTGAGCCAGCTAT 1739
Query 1764 TCACGACGCAAATGAAGCTTTCAAACAACTTTTGGAGTCTTGTGGAAAGCTGCAACTTCT 1823
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1740 TCACGACGCTAATGAAGCTTTCAAACAACTTTTGGAATCTTGTGGAAAGCTGCAACTTCT 1799
Query 1824 AGATAAAATGATGGTCAAACTGAAAGAGCAAGGACACAGAGTCCTAATATACACACAGTT 1883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1800 AGATAAAATGATGGTCAAACTGAAAGAGCAAGGACACAGAGTCCTAATATACACACAGTT 1859
Query 1884 TCAGCATATGCTGGACTTACTTGAAGACTACTGTACCCATAAG 1926
|||||| ||||||||||||||||||||||||||| || |||||
Sbjct 1860 TCAGCACATGCTGGACTTACTTGAAGACTACTGTTCCTATAAG 1902
> Ahg328538 jgi|Araly1|328538|fgenesh1_pm.C_scaffold_7000765
Length=3666
Score = 1110 bits (601), Expect = 0.0
Identities = 1268/1576 (80%), Gaps = 102/1576 (6%)
Strand=Plus/Plus
Query 1197 aatcaagTTTGATGTCCTCCTCACATCGTATGAGATGATCAACCTAGATTCAGCAGTTCT 1256
||| |||||||||||||||||||| || ||||||||||| |||| ||| || |||||||
Sbjct 969 AATTAAGTTTGATGTCCTCCTCACGTCATATGAGATGATTAACCAAGACACATCAGTTCT 1028
Query 1257 AAAACCAATTAAGTGGGA-GTGCATGATTGTTGATGAAGGTCATCGACTGAAAAATAAGG 1315
|||||||| |||| ||| ||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1029 GAAACCAATCAAGT-GGACGTGCATGATTGTTGATGAAGGCCATCGGTTGAAAAATAAGG 1087
Query 1316 ATTCAAAGCTGTTCTCTTCATTGACA-CAGTATT-CAAGTAACCACCGTATTCT-TCTGA 1372
|||||||||| | ||||||||||| | |||| || | ||||| || || |||| | |||
Sbjct 1088 ATTCAAAGCTATACTCTTCATTGA-ATCAGT-TTACGAGTAAGCATCGCGTTCTGT-TGA 1144
Query 1373 CAGGAACACCACTTCAGAACAACTTGGATGAACTTTTCATGCTCATGCATTTTCTTGATG 1432
| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 1145 CCGGAACACCACTTCAGAACAACTTGGATGAACTTTTCGTTCTCATGCATTTTCTTGATG 1204
Query 1433 CGGGGAAGTTTG-GAAGTTTGGAGGAGTTCCAGGAGGAGTTCAAAGATATTAATCAAGAG 1491
| | ||||||| || || ||||| | || || ||||||| || ||||| |||||||||
Sbjct 1205 CCGTCAAGTTTGCGA-GTATGGAGAACTTTCAAAAGGAGTTTAAGGATATAAATCAAGAG 1263
Query 1492 GAGCAGATCTCAAGGTTGCACAAAATGTTGGCTCCACATTTGCTCAGAAGGGTaaaaaaa 1551
||||||| ||||| | ||| ||||||||||||||||| |||| |||||| |||| |||
Sbjct 1264 AAGCAGATTTCAAGACTCCACCAAATGTTGGCTCCACATCTGCTTAGAAGGTTAAAGAAA 1323
Query 1552 GACGT----AATGA-AAGACATGCCCCCCAAA-AAGGAGCTCATTTTGCGTGTTGATCTG 1605
||||| || || |||| ||||||| ||| |||||||||||||||||||||||||||
Sbjct 1324 GACGTGCTCAAGGATAAGA--TGCCCCC-AAAGAAGGAGCTCATTTTGCGTGTTGATCTG 1380
Query 1606 AGCAGTCTGCAGAAAGAA-TATTACAAAGCTATTTTTACCCGTAATTATCAAGTATTGAC 1664
||||| | ||| |||||| | | |||||||| || ||||| |||||||||||| |||||
Sbjct 1381 AGCAGCCAGCAAAAAGAAGTGT-ACAAAGCTGTTATTACCAATAATTATCAAGTCTTGAC 1439
Query 1665 AAA-AAAGGGAGGTGCTCAAATTTCCCTTAATAACATTATGATGGAAT-TACGAAAAGTA 1722
||| ||| | ||||||| |||| || | || | | | ||||| | |||| |||||
Sbjct 1440 AAAGAAACG-AGGTGCTAAAATATC--T-AA---CGTGCTAATGGA-TCTACGCAAAGTT 1491
Query 1723 TGCTGC-CATCCTTATATGCTAGAGGGTGTTGAGCCA-GTTATTCACGACGCAAATGAAG 1780
|||| | ||||| ||| || || | | ||||||||| | || | |||||||||||||
Sbjct 1492 TGCT-CTCATCCGTATCTGTTAAAAGACGTTGAGCCAAGAC-TTGAAGACGCAAATGAAG 1549
Query 1781 CTTTCA-AACAACTTTTGGA-GTCTTGTGGAAAGCTGCAACTTCT-AGATAAAATGATGG 1837
|||| | || |||| ||||| | ||| ||||||| ||||| || | ||| ||||||||||
Sbjct 1550 CTTTTACAA-AACTCTTGGAAG-CTTCTGGAAAGTTGCAA-TTGTTAGACAAAATGATGG 1606
Query 1838 TCAAACTGAAAGAGCAAGGACACAGAGTCCTAATATACACACAGTTTCAGCATATGCTGG 1897
||||||| ||||| || || |||||||| ||||| || |||| || || || | ||| |
Sbjct 1607 TCAAACTCAAAGAACAGGGGCACAGAGTGCTAATCTATTCACAATTCCAACACACGCTTG 1666
Query 1898 AC-TTACTTG-AAGACTACTGTACCCAT-AAGAAATGGCAGTACGAGCGAATTGATGGAA 1954
|| || || |||| ||||| | | |||| ||| | || || || ||||||||||
Sbjct 1667 ACCTT--TTCCAAGATTACTGCAGTT-TCAAGAGTTGGAAATATGAACGGATTGATGGAA 1723
Query 1955 AGGTTGGCGGAGCTGAGCGGCAAATACGCATAGATCGGTTCAATGCCA-AAAATTCTAAC 2013
|||| || ||||||||| ||||| | ||||||||||||| ||||| | |||| ||||||
Sbjct 1724 AGGTCGGTGGAGCTGAGAGGCAAGCAAGCATAGATCGGTTTAATGC-AGAAAAGTCTAAC 1782
Query 2014 AAGTTTTGTTTTTTGCTCTCCACAAGAGCTGGTGGCTTAGGAATAAATCTTGCAACGGCT 2073
||| |||||||||||| | |||||||||||||| |||||||||| |||||||| |||
Sbjct 1783 CGGTTCTGTTTTTTGCTCACTACAAGAGCTGGTGGAATAGGAATAAACCTTGCAACAGCT 1842
Query 2074 GATACAGTAATCATTTATGACAGTGACTGGAATCCTCATGCTGATCTTCAAGCAATGGCT 2133
|||||||| ||||||||||||||||| |||||||||||||||||||| || || ||||||
Sbjct 1843 GATACAGTCATCATTTATGACAGTGATTGGAATCCTCATGCTGATCTCCAGGCTATGGCT 1902
Query 2134 AGAGCTCATCGACTTGGCCAAACAAATAAGGTGATGATTTATAGGCTCATAAACCGAGGC 2193
||||||||||| |||||||||||||||||||| |||||||| |||||||| |||||| |
Sbjct 1903 AGAGCTCATCGTCTTGGCCAAACAAATAAGGTCATGATTTACAGGCTCATTCACCGAG-C 1961
Query 2194 -ACCATTGAAGAAAGGATGATGCA-ATTGACTAAAAAGAAAATGGTTCTAGAGCATCTTG 2251
|| | ||||| ||||| || | ||| ||||| ||||| ||| ||||||||||||| |
Sbjct 1962 TACGGTGGAAGAGCGGATGGTGGAGATT-ACTAAGAAGAAGATGCTTCTAGAGCATCTCG 2020
Query 2252 TTGTTGGGAA-ACTC-AAAACACAAAACATTAATCAGGAAGAGTTAGATGACATCATCAG 2309
| || ||||| | | ||||| || | | || ||||| | |||||||||||||||||
Sbjct 2021 TAGTGGGGAATA-TGGAAAACCCACATC-TTCGGCAGGACGTGTTAGATGACATCATCAA 2078
Query 2310 GTATGGATCAAAGGAGCTTTT-TGCT-A-GTGAAGATGATGAAGCAGGAAAGTCTGGAAA 2366
||||| || ||||||||||| | || | | ||| |||||||||||| |||||||||||
Sbjct 2079 ATATGGTTCCAAGGAGCTTTTCT-CTGAAGAGAA--TGATGAAGCAGGGAAGTCTGGAAA 2135
Query 2367 AATTCATTATGATGATGCGGCTATAGACAAA-TTGCTTGATCGTGATC-TCGTGGAGGC- 2423
||| |||||||||||||| ||||| || ||| |||||||| ||||||| | || || ||
Sbjct 2136 AATCCATTATGATGATGCTGCTATTGA-AAAGTTGCTTGACCGTGATCAT-GTAGATGCT 2193
Query 2424 AGAGGAAGTCTCAGTGGATGATGAAGAGGAGAATGGATTCTTAAAGGCTTTCAAGGTGGC 2483
| |||| |||||| |||||||||| ||||| ||||| || |||||| ||||||||||||
Sbjct 2194 A-AGGAGGTCTCACTGGATGATGAGGAGGATAATGGTTTTTTAAAGAATTTCAAGGTGGC 2252
Query 2484 TAATTTTGAA-TATATAGATGAAAATGAGGCAGCAGCATTAGAGGCA--CAGAGAGTCGC 2540
| |||| || ||||||||||| |||||||| ||||||| ||||| | || | || |
Sbjct 2253 CACTTTT-AAGTATATAGATGACAATGAGGCTGCAGCATCAGAGG-AGGCACA-AG-CTA 2308
Query 2541 TGCTGAAAGCAAATCTTCAGCAGGCAATTCTGATAGAGCAAGTTATTGGGAAGAGTTGTT 2600
| ||||| ||| ||||||| | | || | ||||| ||||| |||||||| |
Sbjct 2309 T--TGAAAACAATTCTTCAG-AT--A-----GA-A---CAAGTCATTGGAAAGAGTTGCT 2354
Query 2601 AAAAGATAAATTTGA-GCTGCACCAGGCTGAGGAGCTTAATGCTCTTGGAAAAAGGAAGA 2659
|||||| |||| ||| | |||| || || || ||||| |||||||||||||| ||||||
Sbjct 2355 AAAAGACAAATATGAAG-TGCAACAAGCCGAAGAGCTCAATGCTCTTGGAAAGAGGAAGC 2413
Query 2660 GAAGTCG-CAAGCAGTTG--GTATCCATTGAAGAAGATGATCTTGCTGGTTTGGAAGATG 2716
||| || ||||||| || |||| | | |||||||||||||||| |||||| |||| ||
Sbjct 2414 GAAA-CGGCAAGCAGGTGATGTATGC-T-GAAGAAGATGATCTTGATGGTTTAGAAG-TG 2469
Query 2717 TGAGCTCTGATGGAGA 2732
| |||||||| |||
Sbjct 2470 --ACCTCTGATG-AGA 2482
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 166501881875
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5