BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25180.1
Length=1980
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481375 jgi|Araly1|481375|fgenesh2_kg.4__435__AT2G25180.1 2665 0.0
Ahg888921 jgi|Araly1|888921|Al_scaffold_0007_907 148 1e-34
> Ahg481375 jgi|Araly1|481375|fgenesh2_kg.4__435__AT2G25180.1
Length=1992
Score = 2665 bits (1443), Expect = 0.0
Identities = 1826/2000 (91%), Gaps = 69/2000 (3%)
Strand=Plus/Plus
Query 1 ATGACTGTTGAACAAAATTTAGAAGCTTTGGATCAGTTTCCTGTAGGAATGAGAGTTCTT 60
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGACTGTGGAACAAAATTTTGAAGCTTTGGATCAGTTTCCTGTAGGAATGAGAGTTCTT 60
Query 61 GCTGTTGATGATGACCAAACTTGTCTCAAAATCCTTGAATCTCTCCTTCGTCACTGCCAA 120
||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||
Sbjct 61 GCTGTTGATGATGACCAAACTTGTCTCAAAATCCTTGAAACTCTTCTTCGTCTCTGCCAA 120
Query 121 TACCATGTAACAACGACGAACCAAGCACAAAAGGCTTTAGAGTTATTGAGAGAGAACAAG 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TACCATGTTACAACGACGAACCAAGCACAAAAGGCTTTAGAGTTATTGAGAGAGAACAAG 180
Query 181 AACAAGTTTGATCTGGTTATTAGTGATGTTGACATGCCTGACATGGATGGTTTCAAACTC 240
|||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 181 AACAAGTTTGATCTTGTTATTAGCGATGTCGACATGCCTGACATGGATGGTTTCAAACTT 240
Query 241 CTTGAGCTTGTTGGTCTTGAAATGGACCTACCTGTCATAATGTTGTCTGCGCATAGTGAT 300
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 241 CTTGAGCTTGTTGGTCTTGAAATGGACCTACCTGTCATAATGTTGTCTGCTCATAGTGAT 300
Query 301 CCAAAGTATGTGATGAAGGGAGTTACTCATGGTGCTTGTGATTATCTACTGAAGCCGGTT 360
||||||||||||||||| |||||||| |||||||||||||| ||| | |||||||||||
Sbjct 301 CCAAAGTATGTGATGAAAGGAGTTACCCATGGTGCTTGTGACTATTTGTTGAAGCCGGTT 360
Query 361 CGTATTGAGGAGTTGAAGAACATATGGCAACATGTCGTGAGAAGTAGATTTGATAAGAAC 420
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 361 CGTATTGAGGAGCTGAAGAACATATGGCAACATGTGGTGAGAAGTAGATTTGATAAGAAC 420
Query 421 CGTGGGAGTAATAATAATGGTGATAAGAGAGATGGATCAGGTAATGAAGGTGTTGGGAAT 480
|||||||| |||||| ||||| |||||||||||||| ||||||||||||||||| |||
Sbjct 421 CGTGGGAG---TAATAACGGTGACAAGAGAGATGGATCGGGTAATGAAGGTGTTGGAAAT 477
Query 481 TCTGATCAGAACAATGGGAAAGGTAATAGAAAACGTAAAGATCAGTATAATGAAGATGAG 540
||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||
Sbjct 478 TCTGATCAGAACAATGGGAGAGCTAATAGAAAACGTAAAGATCAGTATAATGAAGAGGAT 537
Query 541 GATGAGGATAGAGATGATAATGATGATTCGT-GTGCTCAAAAGAAGCAACGTGTTGTTTG 599
|||||||| ||||||||||| |||||||||| | ||||||||||||||||||||||||||
Sbjct 538 GATGAGGAAAGAGATGATAACGATGATTCGTCG-GCTCAAAAGAAGCAACGTGTTGTTTG 596
Query 600 GACTGTTGAGCTGCATAAGAAATTTGTTGCAGCTGTTAACCAATTGGGATATGAGAAGGC 659
||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 597 GACCGTCGAGCTGCATAAGAAATTTGTTGCAGCGGTTAACCAATTGGGATATGAGAAGGC 656
Query 660 TATGCCTAAAAAGATTTTGGATCTGATGAATGTTGAGAAGCTCACTAGAGAAAATGTGGC 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 TATGCCTAAAAAGATTTTGGATCTGATGAATGTTGAGAAGCTCACTAGAGAAAATGTGGC 716
Query 720 CAGTCATCTTCAGAAATTCCGCCTTTACTTGAAGAGGATCAGTGGTGTGGCTAATCAGCA 779
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 717 TAGTCATCTTCAGAAATTCCGCCTTTACTTGAAGAGGATCAGCGGTGTGGCTAATCAACA 776
Query 780 AGCTATTATGGCAAACTCTGAGTTACATTTTATGCAAATGA---------A---TGGACT 827
|||||||||||||||| |||| ||||||||| ||||||||| | ||||||
Sbjct 777 AGCTATTATGGCAAACCCTGATTTACATTTTTTGCAAATGAGTTCTTCTCACAATGGACT 836
Query 828 TGATGGTTTCCATCACCGCCCAATCCCTGTTGGATCTGGTCAGTACCATGGTGGGGCTCC 887
||| |||||| | ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 837 TGACGGTTTCAACCACCGCCCAATCCCTGTTGGATCTGGTCAGTTCCATGGTGGGGCTCC 896
Query 888 TGCAATGAGATCTTTCCCTCCAAACGGGATTCTTGGCAGACTCAATACTCCTTCGGGGAT 947
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 897 TGCAATGAGATCTTTCCCTCCAAATGGGATTCTTGGCCGACTCAATACTCCTTCGGGGAT 956
Query 948 CGGTGTCCGCAGCCTTTCTTCTCCTCCTGCAGGAATGTTCTTGCAAAACCAGACCGATAT 1007
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 957 CGGTGTCCACAACCTTTCTTCTCCTCCTGCAGGAATGTTCTTGCAAAACCAGACCGATCT 1016
Query 1008 CGGAAAGTTTCACCATGTCTCATCACTTCCTCTTAACCACAGTGATGGAGGAAACATACT 1067
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1017 CGGAAAGTTACACCATGTCTCATCACTTCCTCTTAACCACAATGATGGAGGAAACATACT 1076
Query 1068 TCAAGGGTTGCCAATGCCTTTAGAGTTCGACCAGCTT----CAGACAA-A-CAACAACAA 1121
|| |||||||||| ||||||||||||||||||||||| || |||| | |||||||||
Sbjct 1077 TCCAGGGTTGCCACTGCCTTTAGAGTTCGACCAGCTTTATACAAACAACAACAACAACAA 1136
Query 1122 -AAG----T-AGAAACATGAACAGTAACAAGAGCATTGCTGGGACCTCCATGGCTTTTCC 1175
|| | ||||||||||||| |||||||||||| || ||||| ||||||||||||||
Sbjct 1137 CAACAACATTAGAAACATGAACAATAACAAGAGCATCGCCGGGACTTCCATGGCTTTTCC 1196
Query 1176 TAGCTTCTCTACGCAACAAAACTCGCTCATCAGTGCTCCTAATAACAATGTCGTGGTTCT 1235
|||||||||||| ||||| |||||| ||||| ||||||||||||||||| ||||||||||
Sbjct 1197 TAGCTTCTCTACACAACAGAACTCGATCATCGGTGCTCCTAATAACAATCTCGTGGTTCT 1256
Query 1236 AGAAGGTCACCCACAAGCAACTCCTCCAGGCTTCCCAGGACACCAGATCAATAAACGTTT 1295
||||||||| |||||| || |||||||||||||||| |||||||||||||||||||||||
Sbjct 1257 AGAAGGTCATCCACAATCATCTCCTCCAGGCTTCCCGGGACACCAGATCAATAAACGTTT 1316
Query 1296 GGAGCATTGGTCAAATGCTGTATCCTCTTCGACTCACCCTCCTCCCCCGGCACATAACAG 1355
||||||||||||||| ||||||||||| ||||||| |||||||| | | || |||||
Sbjct 1317 GGAGCATTGGTCAAACGCTGTATCCTCATCGACTCTTCCTCCTCCTGC--C-CAGAACAG 1373
Query 1356 TAATAGTATCAATCATCAGTTCGATGTCTCTCCATTACCGCATTCTAGACCCGACCCCTT 1415
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||
Sbjct 1374 TAATAGTATCAATCATCAGTTTGATGTCTCTCCATTACCGCATTCTAGACCCGACACTTT 1433
Query 1416 GGAATGGAACAATGTGTCATCAAGCTACTCTATACCATTCTGTGACTCTGCCAATACATT 1475
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1434 GGAATGGAACAATGTGTCATCAAGCTACTCTATACCATTCTGTGACTCTGCCACTACATT 1493
Query 1476 GAGTTCTCCAGCCTTGGATACAACAAATCCCCGAGCTTTCTGTAGAAACACGGACTTCGA 1535
|||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1494 GAGTCCTCCTGCCTTGGATACAACAAATCCCCGAGCTTTCTGCAGAAACACGGACTTCGA 1553
Query 1536 TTCAAACACAAATGTGCAACCTGGAGTCTTTTATGGT-CCATCCA--C--GG-A-T--G- 1585
||||| |||||||| ||||||||||| |||||||| | || | || | || | | |
Sbjct 1554 TTCAAGCACAAATGCGCAACCTGGAGGCTTTTATGATACCTTGCAGACTCGGCAATCAGG 1613
Query 1586 C--T-ATGG-CT--C------TG-T-TG---AGTAGTAGTAACCCGAAAGAAGGGTTCGT 1628
| | || | | | || | || |||||||||||||||||||||||||||||
Sbjct 1614 CAATTATTGTCCAACCACGGATGCTATGTTGAGTAGTAGTAACCCGAAAGAAGGGTTCGT 1673
Query 1629 CGTAGGCCAACAGAAGTTACAGAGTGGTGGATTCATG-GTTGCAGATGCTGGTTCCTTAG 1687
||||| || ||||||||||||||||||||||||||| || ||||| |||||||||||||
Sbjct 1674 TGTAGGACAGCAGAAGTTACAGAGTGGTGGATTCATGAGT-GCAGAAGCTGGTTCCTTAG 1732
Query 1688 ATGATATAGTCAACTCCACGATGAAGCAGGAACAGAGCCAGGGAGATTTGTCTGGAGGAG 1747
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1733 ATGATATAGTCAACTCCACAATGAAGCAGGAACAGAGCCAGGGAGATTTGTCTGGAGGAG 1792
Query 1748 ATTTGGGATATGGAGGGTTTAGTTCACTCAGAACATGCATATGAGAGA-A-CAAACATTT 1805
||||||| |||||||| ||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1793 ATTTGGGTTATGGAGGCTTTAGTTCACTCAGAACATGCATATGAGAGAGAACAAACATTT 1852
Query 1806 AGACATAAATCAAATATCATCATCTTGT--TTG-TCT---CTTTTTCTCGCTAATCTTTT 1859
|||||||||||||||||||||||||||| ||| | | |||||||| || |||||||
Sbjct 1853 AGACATAAATCAAATATCATCATCTTGTGATTGCTTTTGTCTTTTTCTTTCTTATCTTTT 1912
Query 1860 GTGTATTAAAATTGTAAACTATTTGTTTTCCCACTGGTTCTAGCAATTTAGGACTCCATT 1919
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1913 GTGTATTGAAACTGTAAACTATTTGTTTTCCCACTGGTTCTAGCAATTTAGGACTTCATA 1972
Query 1920 AAAGAAAACAACAAAGAAAA 1939
|||||||| || ||||||||
Sbjct 1973 AAAGAAAATAATAAAGAAAA 1992
> Ahg888921 jgi|Araly1|888921|Al_scaffold_0007_907
Length=1653
Score = 148 bits (80), Expect = 1e-34
Identities = 167/207 (81%), Gaps = 13/207 (6%)
Strand=Plus/Plus
Query 1595 TGTTGAGTAGTAGTAACCCGAAA-GAAGGGTT-CGTCGTAGGCCAACAGAAGTTACAGAG 1652
|||| || ||||| || || ||| ||||| || | || | || ||||||||| |||||||
Sbjct 1427 TGTTTAGAAGTAGCAATCC-AAACGAAGGTTTAC-TCATGGGACAACAGAAGCTACAGAG 1484
Query 1653 TGGTGGATTCATGG-TTGCAGATGCTGGTTCCTTAGATGATATAGTCAACTCCACGATGA 1711
|||| ||||||| || | |||||||||||||||||||||||||||||||| ||||
Sbjct 1485 TGGT---TTCATGGCTT-CTGATGCTGGTTCCTTAGATGATATAGTCAACTCTTTAATGA 1540
Query 1712 -AGCAGGAACAGAGCCAGGGAGATTTGTCTGGAGGAGATTTGGGATATGGAGGGTTTAGT 1770
| |||||||||| ||| ||||| || | ||| |||| ||||| |||| |||||||
Sbjct 1541 CA-CAGGAACAGAACCAATCTGATTTCTCAGAAGGTGATT-GGGATTTGGATGGTTTAGC 1598
Query 1771 TCACTCAGAACATGCATATGAGAGAAC 1797
|||||| |||||||||||||||| |||
Sbjct 1599 TCACTCTGAACATGCATATGAGA-AAC 1624
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74428338730
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5