BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25185.1
Length=309
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320322 jgi|Araly1|320322|fgenesh1_pm.C_scaffold_4000379 466 4e-131
> Ahg320322 jgi|Araly1|320322|fgenesh1_pm.C_scaffold_4000379
Length=309
Score = 466 bits (252), Expect = 4e-131
Identities = 291/310 (94%), Gaps = 2/310 (1%)
Strand=Plus/Plus
Query 1 ATGTCGGCATCAAAAGCAACAATGCTCATTTTGTTCGCTCTCTTTCTTTCCGACATATTG 60
|||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 ATGTTGACATCAAAAGCAACAATGCTCATTTTGTTCGCTCTCTTTCTTTCCGGCATATTG 60
Query 61 TTGGTGAGCATTCCTAGAGCTGAAGCTCAGTTGATAGTTCCATGCAAGACATCAGAACAA 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTGGAGAGCATTCCTAGAGCTGAAGCTCAGTTGATAGTTCCATGCAAGACATCAGAACAA 120
Query 121 TGTAAATCGATTCGATGTTCTAATGGAAGCGCACAATGTGTGAACAAACAATGCCAATGT 180
||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||
Sbjct 121 TGTAAATCGATTCGATGTTCTAACGGAAGCGCGCAATGTGTGAACAAACAATGTCAATGT 180
Query 181 CCAAGCCTCAAACAGATTTACTCGGTGACGGA-TGTGTCGTGCAAGACGGTCTCTGATTG 239
|| || |||||||||||| | ||| ||| | | |||||||||||||||||||||||||||
Sbjct 181 CCGAGTCTCAAACAGATTAATTCGATGATG-ACTGTGTCGTGCAAGACGGTCTCTGATTG 239
Query 240 TGTTGCTTCTCATCAATGCCCGACTGGTTTATCTGCTTGTATTGAAGGAAAATGTATTTG 299
|| ||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||
Sbjct 240 TGCTGCTTCTCATCAATGCCCGCCTGGTTTATATGCTTGTGTTGAAGGAAAATGTATTTG 299
Query 300 TTTGCCTTAG 309
||||||||||
Sbjct 300 TTTGCCTTAG 309
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10874342865
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5