BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25190.1
Length=1237
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481377 jgi|Araly1|481377|fgenesh2_kg.4__437__AT2G25190.1 1668 0.0
Ahg888917 jgi|Araly1|888917|Al_scaffold_0007_903 433 2e-120
> Ahg481377 jgi|Araly1|481377|fgenesh2_kg.4__437__AT2G25190.1
Length=1185
Score = 1668 bits (903), Expect = 0.0
Identities = 1048/1114 (94%), Gaps = 26/1114 (2%)
Strand=Plus/Plus
Query 14 AAGTGCTAAAAGAACACAACATAACTCTTTTGCTTAAGCCTCAAAAAATTGTCATTAACC 73
||||||| ||||||||||||||||| |||||||||||| | | || | ||||| ||||||
Sbjct 1 AAGTGCTTAAAGAACACAACATAACACTTTTGCTTAAG-C-C-AATATTTGTCTTTAACC 57
Query 74 CAATTTCCCAGAAACTTCAAAAACAGTTGG-GG--GAAGAAGAAGAAGATGAAACGACGA 130
|| ||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 58 CACTTTCCCAGAAACTTCAAAAACAGTTGGAGGAAGAAGAAGAAGAAGATGAAACGACGA 117
Query 131 AGAACCCTTTTATAAAGTCTCAATCTTCT-AATCCAAGATCTGCCC-TTTTTCAGA-T-T 186
|||||||||||| |||||||||||||| | |||||||||||||||| ||||||||| | |
Sbjct 118 AGAACCCTTTTAAAAAGTCTCAATCTT-TAAATCCAAGATCTGCCCTTTTTTCAGATTCT 176
Query 187 CTATCTCAAAGCTTTCCTCGATCTTGTGATGTATTGAAGCCGGAGACTGAGAGAGATGTT 246
||||||| |||||| || ||||||||| ||||||||||||| | || | | |||||||||
Sbjct 177 CTATCTC-AAGCTTACC-CGATCTTGTCATGTATTGAAGCC-G-GA-T-ATAGAGATGTT 230
Query 247 GTGCTTCAAAGGCTCGGTTAAGCGGAAGAAGCAATCCGGTTCTGTTCCGGTTTATCTGAA 306
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 231 GTGCTTGAAAGGTTCGGTTAAGCGGAAGAAGCAATCCGGTTCTGTTCCGGTTTATCTGAA 290
Query 307 TGTCTACGATCTAACTCCTATGAATGCTTATGGTTATTGGCTTGGACTTGGTGTTTTTCA 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 TGTCTACGATCTAACTCCTATGAATGCTTATGGTTATTGGCTTGGACTTGGTGTTTTTCA 350
Query 367 TTCTGGTGTTGAAGTTCATGGAGTTGAATATGCATTTGGAGCACATGAATCATCAAGCAC 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 TTCTGGTGTTGAAGTTCATGGAGTTGAATATGCATTTGGAGCACATGAATCATCAAGCAC 410
Query 427 AGGTATTTTTGAAGTGGAACCAAAGAAGTGTCCTGGTTTCACGTTTAGGAAATCGATTCT 486
|||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 411 AGGTATATTTGAAGTGGAGCCAAAGAAGTGTCCCGGTTTCACGTTTAGGAAATCGATTCT 470
Query 487 TGTGGGGAAAACCGACTTGGTTGCGAAAGAAGTTCGTGTTTTTATGGAGAAATTAGCTGA 546
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 471 TGTGGGGAAAACCGACTTGGTTGCGAAAGAAGTTCGAGTCTTTATGGAGAAATTAGCTGA 530
Query 547 AGAGTATCAAGGAAACAAGTACCATCTCATCACAAGGAACTGCAACCATTTTTGCAATGA 606
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 531 AGAGTATCAAGGAAACAAGTACCATCTCATCACAAGAAACTGCAACCATTTTTGCAATGA 590
Query 607 AGTTTGTCTTAAACTTGCTCAGAAATCAATCCCTAGATGGGTGAATCGACTTGCTCGCTT 666
|||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 591 AGTTTGTCTTAAACTTACTCAGAAATCAATACCTAGATGGGTGAACCGACTTGCTCGCTT 650
Query 667 AGGGGTTCTCTGCAACTGTGTGTTACCACCTCGTTTGAACGAGGCAAAAGTGAGACGAGT 726
||||||||||||||| |||||||||||||| ||||||||||||||||||||||| || ||
Sbjct 651 AGGGGTTCTCTGCAATTGTGTGTTACCACCGCGTTTGAACGAGGCAAAAGTGAGGCGGGT 710
Query 727 AGGAAAAGGAGAGCTTTCGGAAAGTGAGAAGAAGAAACTAAGAAACCGATCACGATCAGA 786
|||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||
Sbjct 711 AGGAAAAGGAGAGCTTACGGAGAGTGAGAAGAAGAAACTAAGAAACCGATCAAGATCAGG 770
Query 787 TCCTTTACTGTCTTCTTCTCCGTCTTCATCGACACCTGATAATCATCGTTCACACATTCG 846
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 771 TCCTTTACTGTCTTCTTCTTCGTCTTCATCGACACCTGATAATCATCGTTCACACATTCG 830
Query 847 AGCAAAATCAAGTGGTAATCA-TCcttcttcttcttcttcttcgtct---tcGGGTTCTA 902
||||||||||| |||||| || ||||||||||||||||||||| || ||||||||||
Sbjct 831 AGCAAAATCAACTGGTAA-CAATCCTTCTTCTTCTTCTTCTTCTTCGACATCGGGTTCTA 889
Query 903 AGAAAAATCGAAGACCTA-AAGCTCAAGACCAGAAGTCGCCAAGCGTAAGCATCAAGACT 961
||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 890 AGAAAAATCAAAGACCTAGAA-CTCAAGACCAGAAGTCGCCAAGCGTAAGCATCAAGACT 948
Query 962 TGATTGTTATCATCATTATTTGAACATTTAATTATTGTTTATGAAAAGGACAAAAAGTAA 1021
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 TGATTCTTATCATCATTATTTGAACATTTAATTATTGTTTATGAAAAGGACAAAAAGTAA 1008
Query 1022 AAAGACAAGAACAGAGGAACATGCCAAGCAAAGTATCAATCATATATGGGGCATGCTCGT 1081
|||||||||| |||| |||||||||||| ||||||||||||||| ||||| |||||||||
Sbjct 1009 AAAGACAAGA-CAGAAGAACATGCCAAGTAAAGTATCAATCATACATGGG-CATGCTCGT 1066
Query 1082 GCTTTGTTCTAAGGTTATTGAAAACCTTTTTGGG 1115
||||||||||||||||||| |||||||| |||||
Sbjct 1067 GCTTTGTTCTAAGGTTATTTAAAACCTTATTGGG 1100
Score = 122 bits (66), Expect = 4e-27
Identities = 85/94 (90%), Gaps = 1/94 (1%)
Strand=Plus/Plus
Query 1145 CTTA-TAGGAGAGAGAGAGGTCATGAGTATGTACAAAAAGAATATGATTCATATATTTTT 1203
|||| | |||||| ||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 1092 CTTATTGGGAGAGTGAGAGGTTATGATTATGTACAAAAAGAATATGATTCATATATTTTT 1151
Query 1204 CTATGTTTTATCTCTCATTTAAACTTCTTCATTT 1237
|||||||||||||| ||||| || ||||| ||||
Sbjct 1152 CTATGTTTTATCTCACATTTCAATTTCTTTATTT 1185
> Ahg888917 jgi|Araly1|888917|Al_scaffold_0007_903
Length=2034
Score = 433 bits (234), Expect = 2e-120
Identities = 526/661 (80%), Gaps = 43/661 (7%)
Strand=Plus/Plus
Query 259 CTCGGTTAAGCGGAAGAAGCAATCCGGTTCTGTTCCGGTTTATCTGAATGTCTACGATCT 318
|||||| | |||||||||| |||| ||||| |||||||||||||||||||| ||||||||
Sbjct 18 CTCGGTGAGGCGGAAGAAGAAATCTGGTTCGGTTCCGGTTTATCTGAATGTGTACGATCT 77
Query 319 AACTCCTATGAATGCTTATGGTTATTGGCTTGGACTTGGTG-TTTTTCATTCTGGTGTTG 377
|| || ||||||| ||||||||| ||||| ||| |||| | | | ||| |||||| |||
Sbjct 78 TACCCCAATGAATGTTTATGGTTACTGGCTCGGAATTGG-GATCTATCACTCTGGTCTTG 136
Query 378 AAGTTCATGGAGTTGAATATGCATTTGGAGCACATGAATCA-TCAAGCACAGGTATTTTT 436
|||||||||| |||||||||| || || ||||| | | || || ||| | || || |||
Sbjct 137 AAGTTCATGGGGTTGAATATGGATACGGGGCACACG-AGCATTCGAGCTCGGGAATCTTT 195
Query 437 GAAGTGGAACCAAAGAAGTGTCCTGGTTTCACGTTTAGGAAATCGATTCTTGTGGG-GAA 495
||||| || |||||||||||||||||||||||||| |||||||||||||||||||| | |
Sbjct 196 GAAGTTGAGCCAAAGAAGTGTCCTGGTTTCACGTTCAGGAAATCGATTCTTGTGGGTG-A 254
Query 496 AACCGACTTG-GTTGCGAAAGAAGTTCGTGTTTTTATGGAGAAATTAGCTGAAGAGTATC 554
||| || || | || ||||||||| | ||||||||||||||| | ||||||||||
Sbjct 255 AACAGAGATGAG-GGCTAAAGAAGTTAGAACCTTTATGGAGAAATTATCAGAAGAGTATC 313
Query 555 AAGGAAACAAGTACCATCTCATCACAAGGAACTGCAACCATTTTTGCAATGAAGTTTGTC 614
| |||||||| |||||||||||||||||||||||||||||||| ||||| | ||||||
Sbjct 314 AGGGAAACAAATACCATCTCATCACAAGGAACTGCAACCATTTCTGCAACCATGTTTGT- 372
Query 615 TT-AAACTTGCTCAGAAA-TCAATCCCTAGATGGGTGAATCGACTTGCTCGCTTAGGGGT 672
|| ||||| |||| ||| ||||||||||| ||||| || || |||||||||||||| |
Sbjct 373 TTGAAACTAACTCA-AAACTCAATCCCTAGTTGGGTCAACCGTCTTGCTCGCTTAGGT-T 430
Query 673 TC-TCTGCAACTGTGTGTTACCACCTCGTTTGAACGAGGCAAAAGTGA-GACGAGTAGGA 730
|| |||||||||||||||| || || | ||||||||| | ||||||| || | ||||||
Sbjct 431 TCCTCTGCAACTGTGTGTTGCCGGCTTGCTTGAACGAGACTAAAGTGAAGAGG-GTAGGA 489
Query 731 AAAG--GAGA-GCT-TTCG--G-A-AA-GTGAGAAGAAGA-AACTAAGAA-AC--CGATC 777
|||| | || ||| || | | | || || ||||||||| || ||||| | |||
Sbjct 490 AAAGACGGGAAGCTCTTGGAAGGAGAAAGTAAGAAGAAGAGAAAGAAGAAGAAAGCGAGA 549
Query 778 A-C-GATCAGATCCTTTA-CTGTCTTCTTCTCCGTCTTCATCGACACCTGATAATCATCG 834
| | |||||| ||| ||| || || |||||| | |||| | | |||||| |||
Sbjct 550 AGCCGATCAGGTCCGTTATCT-TCGTCTTCTTCAAATTCAAGGTTA---GATAATAATCC 605
Query 835 TTCACACATTC-GAGCAAAATCAA-GTGGTAATCATCcttcttcttcttcttcttcgtct 892
| |||| | | || ||||||||| | ||||||| |||| ||| | |||||||| |||||
Sbjct 606 TACACATAA-CAGATCAAAATCAACG-GGTAATCCTCCT-CTT-T-CTTCTTCTCCGTCT 660
Query 893 t 893
|
Sbjct 661 T 661
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46204975404
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5