BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25200.1
Length=1172
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481378 jgi|Araly1|481378|fgenesh2_kg.4__438__AT2G25200.1 1598 0.0
> Ahg481378 jgi|Araly1|481378|fgenesh2_kg.4__438__AT2G25200.1
Length=1170
Score = 1598 bits (865), Expect = 0.0
Identities = 1075/1177 (91%), Gaps = 12/1177 (1%)
Strand=Plus/Plus
Query 1 ATACCTAAAAATGAAAATCTCTGCTCTTGGTCGCGGTGGCTCCTCCCCTTTGTCCGCCTG 60
||||||||||||||||||||||||||||||||||||||| ||||| ||||| || |||||
Sbjct 1 ATACCTAAAAATGAAAATCTCTGCTCTTGGTCGCGGTGGTTCCTCTCCTTTATCAGCCTG 60
Query 61 TTTCCATCCTTCCGCCACCGCCATCAACGACGATCTACCGTCGGCTCTTCCATCCCCATC 120
|||||| ||||||||||||||||||||||||||||||||||| |||||||||| || ||
Sbjct 61 TTTCCACCCTTCCGCCACCGCCATCAACGACGATCTACCGTCTTCTCTTCCATCACCGTC 120
Query 121 AAATCCATCGTATATCTCCACCTCCGGCGACGCTACCACAACTTGTCAGTACCACACTAA 180
|||||||||||||| |||| ||||||||||| ||||| |||| ||||| |||||||||||
Sbjct 121 AAATCCATCGTATAGCTCCGCCTCCGGCGACCCTACCGCAACATGTCATTACCACACTAA 180
Query 181 CGTTGGTGTTTTCTTTCTTTCATGGTCTCGATCCTTCCTCCGACGCTCTCTCCACCTTCA 240
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 181 CGTTGGTGTTTTCTTTCTTTCATGGTCTCAATCCTTCCTCCGCCGCTCTCTCCACCTTCA 240
Query 241 TTTCTACTCATGCAACTCCACAAATTGCTATCTACACTCTCTAGATTGTTACCGTCACTC 300
||||||||||||||||||||||||||| ||||| ||||||| || ||||||||||||||
Sbjct 241 TTTCTACTCATGCAACTCCACAAATTGTTATCTCCACTCTCCGGAATGTTACCGTCACTC 300
Query 301 CATTCCCTTCGCCTTCCGGCTCGAAATCAAACCCTTGACATTCTGGAGAAAA-AATGGAT 359
|||||| ||||| ||||||||||||||||| |||||||| || ||||||||| || || |
Sbjct 301 CATTCCTTTCGCTTTCCGGCTCGAAATCAAGCCCTTGACCTTTTGGAGAAAACAA-GGGT 359
Query 360 CAAAGAAGTTATCTCGAAAGCCGGATATTCGGGTGGTATGGGACCTGACTCACGCAAAAT 419
| |||||| ||||||||||||||||||||||||| ||||||||||| |||||||||| ||
Sbjct 360 CCAAGAAGATATCTCGAAAGCCGGATATTCGGGTCGTATGGGACCTAACTCACGCAAGAT 419
Query 420 TTGGATCAGGACCCGATCCGGAATCCGGGTTTTACGTGGCAGTCTTTGTATCCGGCGAAG 479
||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 420 TTGGATCAGGACCTGACCCGGAATCCGGGTTTTACGTGGCTGTCTTTGTATCCGGCGAAG 479
Query 480 TAGGTCTTCTTGTCGGTGGAGGAAACTTGAAACAGAGACCGAGGAGACAAATCTTGGTGT 539
| |||||||| |||| | ||||||||||||||| || || || ||||||||||||||||
Sbjct 480 TGGGTCTTCTCATCGGCGAAGGAAACTTGAAACAAAGGCCTAGAAGACAAATCTTGGTGT 539
Query 540 CCAAGAAAGAGAATCTGTTTGGAAACAGAGTTTACTCTACGAAAATCATGATTCAAGGAA 599
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 540 CCAAGAAAGAGAATCTGTTTGGAAACAGAGTTTACTCTACGAAAATCAAGATTCAAGGAA 599
Query 600 AACTTAGAGAGATTAGTATCGACGTTAAGGTTGTTAACGACGATGCTAGTCTCCGGTTTA 659
|||| ||||||||||| || ||| | |||||||||||| ||||||||| |||||||||||
Sbjct 600 AACTAAGAGAGATTAGCATAGACATCAAGGTTGTTAACAACGATGCTAATCTCCGGTTTA 659
Query 660 GCGTAGACGATAAGAGTGTCCTAAAGATTAGTCAGCTTCAATGGAAATTCAGAGGAAACA 719
||||||| || |||||||| ||||||||| |||||||||||||||||| |||||||||
Sbjct 660 GCGTAGAAGACAAGAGTGTTTTAAAGATTAATCAGCTTCAATGGAAATTTAGAGGAAACT 719
Query 720 CAAAGATCGTGATCGATGGTGTGACAATACAGAT-ATCATGGGATGTTT-TCAACTGGCT 777
|||||||||||||||||||||| || |||||||| || ||||||||||| | |||||| |
Sbjct 720 CAAAGATCGTGATCGATGGTGTTACGATACAGATAAT-ATGGGATGTTTAT-AACTGGTT 777
Query 778 GTTTGGTGGCAAGGATAAGGTTAAACCGGAT-AAGATTCCCGCCGTGTTCTTACTCCGGT 836
|||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||| |
Sbjct 778 GTTTGGTGACAAGGATAAGGTTAAACCGGATAAAG-TTCCCGCCGTGTTCTTACTCCGAT 836
Query 837 TTGAGAACCAAGAGGTTGAAGGAAACGACGTTTTGATGATGAACAAGCGTGTAAGAGACG 896
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 837 TTGAGAACCAAGATGTTGAAGGAAACGACGTGTTGATGATGAACAAGCGTGTAAGAGACG 896
Query 897 ATGTCA-TTTTACGGAAGGAGAATTGTCGAACACCGTCGTTTTGGGCGAGTACGTATAGT 955
|||| | |||| ||||||||||| |||||| |||||||||||||||| | | ||| ||
Sbjct 897 ATGT-AGTTTTGCGGAAGGAGAACACTCGAACGCCGTCGTTTTGGGCGAATTCATATGGT 955
Query 956 CATTGGTCTTCTTCTAGGATGTCTTCTGTGATGGAGTGGTCTAGTTGTAGGGAAGAAGAT 1015
||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||
Sbjct 956 CATTGGTCTTCTTCTAGGATGTCTTCTGTGATGGAGTGGCCTAGTTGTAGGGAGGTAGAT 1015
Query 1016 GAGAGGAGCTTCGGGTCTAAGAGTTGGTTCTCTTTGATTATCTATGCTTGGAGGAAGTAA 1075
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 GAGAGGAGTTTTGGGTCTAAGAGTTGGTTCTCTTTGATTATCTATGCTTGGAGGAAGTAA 1075
Query 1076 AAACACACTCAACTTATCTTTATCAAAAAATTTTATTTGTATATAAAGCAACCAATTGGC 1135
||||||||||||||||| |||||||| |||| |||||||||||||||| |||||||
Sbjct 1076 AAACACACTCAACTTAT-TTTATCAATTTTTTTT-TTTGTATATAAAGCAAACAATTGGA 1133
Query 1136 TTTGAGGATATATGAAAGTGTGTAAGAATCAGAGTTT 1172
|||||||||||| ||||||| |||||||||||||||
Sbjct 1134 TTTGAGGATATACCAAAGTGTATAAGAATCAGAGTTT 1170
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43726985799
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5