BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G25210.1

Length=402
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg932651 jgi|Araly1|932651|scaffold_400639.1                        320    4e-87
  Ahg944771 jgi|Araly1|944771|scaffold_701000.1                        231    2e-60
  Ahg477452 jgi|Araly1|477452|fgenesh2_kg.3__153__AT3G02190.1          180    8e-45


> Ahg932651 jgi|Araly1|932651|scaffold_400639.1
Length=197

 Score =  320 bits (173),  Expect = 4e-87
 Identities = 190/198 (96%), Gaps = 1/198 (1%)
 Strand=Plus/Plus

Query  54   CAAGATCGCAAGACTTCAAGATGCCGTCGCACAAGTCGTTCATGATTAAGAAGAAATTGG  113
            |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| | |
Sbjct  1    CAAGATCGCAAGGCTTGAAGATGCCGTCGCACAAGTCGTTCATGATTAAGAAGAAACTAG  60

Query  114  GGAAGAAAATGAGGCAAAACAGGCCTATTCCTCACTGGATTCGTCTTCGTACCGACAACA  173
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   CGAAGAAAATGAGGCAAAACAGGCCTATTCCTCACTGGATTCGTCTTCGTACCGACAACA  120

Query  174  CCATCAGGTACAATGCTAAGCGTAGGCATTGGCGCAGAACCAAGCTTGGATTCTAAGAGG  233
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  CCATCAGGTACAATGCTAAGCGTAGGCATTGGCGCAGAACCAAGCTTGGATTCTAAGAGG  180

Query  234  TTTACTTTTGCTTATTGT  251
            || |||||| | ||||||
Sbjct  181  TT-ACTTTTACCTATTGT  197


> Ahg944771 jgi|Araly1|944771|scaffold_701000.1
Length=225

 Score =  231 bits (125),  Expect = 2e-60
 Identities = 160/177 (90%), Gaps = 1/177 (1%)
 Strand=Plus/Plus

Query  54   CAAGATCGCAAGACTTCAAGATGCCGTCGCACAAGTCGTTCATGATTAAGAAGAAATTGG  113
            ||| ||| || ||||||||||||||||||||||||||||| ||||| ||||||||  |||
Sbjct  2    CAA-ATCTCACGACTTCAAGATGCCGTCGCACAAGTCGTTTATGATCAAGAAGAAGCTGG  60

Query  114  GGAAGAAAATGAGGCAAAACAGGCCTATTCCTCACTGGATTCGTCTTCGTACCGACAACA  173
             |||||| ||||| || |||||||||||||| ||||||||||||||||||||||||||||
Sbjct  61   CGAAGAAGATGAGACAGAACAGGCCTATTCCCCACTGGATTCGTCTTCGTACCGACAACA  120

Query  174  CCATCAGGTACAATGCTAAGCGTAGGCATTGGCGCAGAACCAAGCTTGGATTCTAAG  230
            |||||||||||||||| ||||| ||||| ||||| ||||||||||| ||||||||||
Sbjct  121  CCATCAGGTACAATGCCAAGCGCAGGCACTGGCGTAGAACCAAGCTCGGATTCTAAG  177


> Ahg477452 jgi|Araly1|477452|fgenesh2_kg.3__153__AT3G02190.1
Length=406

 Score =  180 bits (97),  Expect = 8e-45
 Identities = 142/164 (87%), Gaps = 1/164 (1%)
 Strand=Plus/Plus

Query  69   TCAAGATGCCGTCGCACAAGTCGTTCATGATTAAGAAGAAATTGGGGAAGAAAATGAGGC  128
            ||||||||||||||||||||||||||||||||||||||||  | |||||||| ||||| |
Sbjct  55   TCAAGATGCCGTCGCACAAGTCGTTCATGATTAAGAAGAAGCTAGGGAAGAAGATGAGAC  114

Query  129  AAAACAGGCCTATTCCTCACTGGATTCGTCTTCGTACCGACAACACCATCAGGTACAATG  188
            | |||||||| || ||| | ||||| ||||| |||||||| ||||  ||||||||||| |
Sbjct  115  AGAACAGGCCGATCCCTAATTGGATCCGTCTCCGTACCGATAACAGAATCAGGTACAACG  174

Query  189  CTAAGCGTAGGCATTGGCGCAGAACCAAGCTTGGATTCTAAGAG  232
            ||||||||||||| |||||| | |||||||| || ||||| |||
Sbjct  175  CTAAGCGTAGGCACTGGCGCCGTACCAAGCTAGGGTTCTA-GAG  217



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14422812642


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5