BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25220.2
Length=1573
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481379 jgi|Araly1|481379|fgenesh2_kg.4__439__AT2G25220.1 1580 0.0
Ahg491535 jgi|Araly1|491535|fgenesh2_kg.7__968__AT4G32000.1 894 0.0
Ahg932655 jgi|Araly1|932655|scaffold_400643.1 117 3e-25
> Ahg481379 jgi|Araly1|481379|fgenesh2_kg.4__439__AT2G25220.1
Length=1302
Score = 1580 bits (855), Expect = 0.0
Identities = 959/1009 (95%), Gaps = 7/1009 (1%)
Strand=Plus/Plus
Query 385 AATTCA-TTTTCCTTGTTAATGAGACGACTTGGCTCGATTAAAACTCAGAGAAGAACTTC 443
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 168 AATTCATTTTTCCTTGTTAATGAGACGACTCGGCTCGATTAAAACTCAGAGAAGAACTTC 227
Query 444 TATCCAA-AAGGGTTACGTGCAATTTTTCGATATCAAGACCCTCGAGAAAGCGACAGGCG 502
|| |||| |||||||||||||| |||||||||||||| || ||||||||||| |||||||
Sbjct 228 TA-CCAACAAGGGTTACGTGCAGTTTTTCGATATCAAAACGCTCGAGAAAGCAACAGGCG 286
Query 503 GTTTTAAAGAAAGTAGTGTAATCGGACAAGGCGGTTTCGGATGCGTTTACAAGGGTTGTT 562
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 287 GTTTTAAAGACAGTAGTGTAATCGGACAAGGCGGTTTCGGTTGCGTTTACAAGGCTTGTT 346
Query 563 TGGACAATAACGTTAAAGCAGCGGTCAAGAAGATCGAGAACGTTAGCCAAGAAGCAAAAC 622
||||||| || || ||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 347 TGGACAACAATGTGAAAGCAGCGATCAAGAAGATCGAAAACGTTAGCCAAGAAGCAAAAC 406
Query 623 GAGAATTTCAGAATGAAGTTGACTTGTTGAGCAAGATCCATCACTCGAACGTTATATCAT 682
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 407 GAGAATTTCAGAATGAAGTTGACTTGTTGAGCAAGATCCATCACCCGAACGTTATTTCAT 466
Query 683 TGTTGGGCTCTGCAAGCGAAATCAACTCGAGTTTCATCGTTTATGAGCTTATGGAGAAAG 742
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 467 TGTTGGGCTCCGCAAGCGAAATCAACTCGAGTTTCATCGTTTATGAGCTTATGGAGAAAG 526
Query 743 GATCATTAGATGAACAGTTACATGGGCCTTCTCGTGGATCAGCTCTAACATGGCACATGC 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 527 GATCATTAGATGAACAGTTACATGGGCCTTCTCGTGGATCAGCTCTAACATGGCACATGC 586
Query 803 GTATGAAGATTGCTCTTGATACAGCTAGAGGACTAGAGTATCTCCATGAGCATTGTCGTC 862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 587 GTATGAAGATTGCTCTTGATACAGCTAGAGGACTAGAGTATCTCCATGAGCATTGTCATC 646
Query 863 CACCAGTTATCCACAGAGATTTGAAATCTTCGAATATTCTTCTTGATTCTTCCTTCAACG 922
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 647 CACCAGTTATCCACAGGGATTTGAAATCTTCGAATATTCTTCTTGATTCTTCCTTCAATG 706
Query 923 CCAAGATTTCAGATTTCGGTCTTGCTGTATCGCTGGATGAACATGGCAAGAACAACATTA 982
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 707 CCAAGATTTCAGATTTCGGTCTTGCTGTATCGCTTGATGAGCATGGCAAGAACAACATTA 766
Query 983 AACTCTCTGGGACACTTGGTTATGTTGCCCCGGAATACCTCCTTGAC---GGAAAACTGA 1039
|||| ||||| || ||||||||||||||||||||||| ||||||||| || |||||||
Sbjct 767 AACTATCTGGTACGCTTGGTTATGTTGCCCCGGAATATCTCCTTGACCATGGGAAACTGA 826
Query 1040 CGGATAAGAGTGATGTTTATGCATTTGGGGTAGTTCTGCTTGAACTCTTGTTGGGTAGAC 1099
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 827 CGGATAAGAGTGATGTTTATGCATTTGGAGTGGTTCTGCTTGAACTCTTGTTGGGTAGAC 886
Query 1100 GACCAGTTGAAAAATTAACTCCAGCTCAATGCCAATCTCTTGTAACTTGGGCAATGCCAC 1159
| || ||||| ||||| || ||||||||||||||||||||||| ||||||||||||||||
Sbjct 887 GGCCGGTTGAGAAATTGACACCAGCTCAATGCCAATCTCTTGTGACTTGGGCAATGCCAC 946
Query 1160 AACTTACCGATAGATCCAAGCTTCCAAACATTGTGGATGCCGTTATAAAAGATACAATGG 1219
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 947 AACTTACCGATAGATCCAAGCTTCCAAACATTGTGGATGCGGTTATAAAAGATACAATGG 1006
Query 1220 ATCTCAAACACTTATACCAGGTAGCAGCCATGGCTGTGTTGTGCGTGCAGCCAGAACCAA 1279
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1007 ATCTCAAGCACTTATACCAGGTAGCAGCCATGGCTGTGTTGTGCGTGCAGCCAGAACCGA 1066
Query 1280 GTTACCGGCCGTTGATAACCGATGTTCTTCACTCACTTGTTCCACTGGTTCCGGTAGAGC 1339
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1067 GTTACCGGCCGTTAATAACCGATGTTCTTCACTCACTTGTTCCATTGGTTCCGGTAGAGC 1126
Query 1340 TAGGAGGGACTCTCCGGTTAACAAGATGATTCACAGAAACACGCCAAAA 1388
||||||||||||||||||||||| ||| ||| ||| || ||||||||||
Sbjct 1127 TAGGAGGGACTCTCCGGTTAACACGATAATTGACATAA-CACGCCAAAA 1174
Score = 276 bits (149), Expect = 4e-73
Identities = 164/171 (96%), Gaps = 1/171 (1%)
Strand=Plus/Plus
Query 148 ATGGGAAGTGGTGAAGAAGATAGATTTGATGCTCATAAGAAACTTCTGATTGGTCTCATA 207
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGGAAGTGGTGAAGAAGACAGATTTGATGCTCATAAGAAACTTCTGATTGGTCTTATA 60
Query 208 ATCAGTTTCTCTTCTCTTGGCCTTATAATCTTGTTCTGTTTTGGCTTTTGGGTTTATCGC 267
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATCAGTTTCTCTTCTCTTAGCCTTATAATCTTGTTCTGTTTTGGCTTTTGGGTTTATCGC 120
Query 268 AAGAACCAATCTCCAAAATCCATCAACAACTCAGGTACTTTCATCAGTAAT 318
|||||||||||||| |||||||||||||| ||||||||||||| ||| |||
Sbjct 121 AAGAACCAATCTCCCAAATCCATCAACAATTCAGGTACTTTCA-CAGAAAT 170
Score = 209 bits (113), Expect = 4e-53
Identities = 125/130 (96%), Gaps = 3/130 (2%)
Strand=Plus/Plus
Query 1441 tttGTATAGGGTTATGATCCACTCATCTGAAAGTTTGGGGGTAAGAATGTGAGAATATAA 1500
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 1175 TTTGTATAGGGTTATGATCCGCTCATCTCAAAGTTTGGGGGTAAGAATGTGAGAATATAA 1234
Query 1501 GTTTT-CAGGGTTGTTGAGTTCTATATAATTATATTTGTTTCTTTTTATTGTCAAATATA 1559
||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1235 GTTTTCCAGGGTTGTTGAGTTC--TATAATTATATTTGTTTCTTTTTATTGTCAAATATA 1292
Query 1560 ATTATATTTT 1569
||||||||||
Sbjct 1293 ATTATATTTT 1302
> Ahg491535 jgi|Araly1|491535|fgenesh2_kg.7__968__AT4G32000.1
Length=1255
Score = 894 bits (484), Expect = 0.0
Identities = 785/930 (84%), Gaps = 22/930 (2%)
Strand=Plus/Plus
Query 444 TATCCAA-AAGGGTTACGTGCAATTTTTCGA-TATCAAGACCCTCGAGAAAGCGACAGGC 501
||||||| ||||||| ||||| | ||||| || |||||| || |||||||| ||||||
Sbjct 320 TATCCAAGAAGGGTTTTGTGCAGTCCTTCGATTA-CAAGACACTAGAGAAAGCAACAGGC 378
Query 502 GGTTTTAAAGAAAGTAGTGTAATCGGACAAGGCGGTTTCGGATG-CGTTTACAAGGGTTG 560
||||| ||||| ||| | | | |||| |||||| |||||| | |||||||||| ||
Sbjct 379 GGTTTCAAAGACGGTAATCTTGTAGGACGAGGCGGATTCGGA-GATGTTTACAAGGCCTG 437
Query 561 TTT-GG--ACAATAACGTTAAAGCAGCGGTCAAGAAGATCGAGAACGTTAGCCAAGAAGC 617
||| || |||| ||| | |||||| ||||| |||||||| |||||||| ||||||||
Sbjct 438 TTTAGGCAACAAAAACACTCTAGCAGCAGTCAAAAAGATCGAAAACGTTAGTCAAGAAGC 497
Query 618 AAAACGAGAATTTCAGAATGAAGTTGACTTGTTGAGCAAGATCCATCACTCGAACGTTAT 677
|||||||||||||||||| |||||||| |||||||||||||| || ||| ||||| | ||
Sbjct 498 AAAACGAGAATTTCAGAACGAAGTTGATTTGTTGAGCAAGATTCACCACCCGAACATAAT 557
Query 678 ATCATTGTTGGGCTCTGCAAGCGAAATCAACTCGAGTTTCATCGTTTATGAGCTTATGGA 737
|||||||| || | || || ||||||| ||||||||| ||||| || ||||| |||||
Sbjct 558 CTCATTGTTTGGATATGGAAATGAAATCAGCTCGAGTTTTATCGTCTACGAGCTGATGGA 617
Query 738 GAAA-GGATCATTAGATGAACAGTTACATGGGCCTTCTCGTGGATCAGCTCTAACATGGC 796
||| ||||| || |||| ||||||||| || |||||||| ||||| ||| |||| ||||
Sbjct 618 -AAATGGATCCTTGGATGCACAGTTACACGGACCTTCTCGGGGATCGGCTTTAACGTGGC 676
Query 797 ACATGCGTATGAAGATTGCTCTTGATACAGCTAGAGGACTAGAGTATCTCCATGAGCATT 856
||||||| ||||||||||||||||||||||| |||| | ||||||||||| |||| ||
Sbjct 677 ACATGCGGATGAAGATTGCTCTTGATACAGCAAGAGCTGTTGAGTATCTCCACGAGCGTT 736
Query 857 GTCGTCCACCAGTTATCCACAGAGAT-TTGAAATCTTCGAATATTCTTCTTGATTCTTCC 915
||||||| || ||||||||||||||| || || || || |||||||| ||||||||||||
Sbjct 737 GTCGTCCTCCGGTTATCCACAGAGATATT-AAGTCGTCAAATATTCTCCTTGATTCTTCC 795
Query 916 TTCAACGCCAAGATTTCAGATTTCGGTCTTGCTGT-ATCGCTGGATGA-ACATGGCAAGA 973
||||||||||||||||| ||||| |||||||| || || | ||| || || |||||||
Sbjct 796 TTCAACGCCAAGATTTCGGATTTTGGTCTTGCGGTAAT-GGTGG-GGACTCACGGCAAGA 853
Query 974 ACAACATTAAACTCTCTGGGACACTTGGTTATGTTGCCCCGGAATACCTCCTTGACGGAA 1033
||||||||||||| || |||||||||||||||||||| || ||||| || || || ||||
Sbjct 854 ACAACATTAAACTATCAGGGACACTTGGTTATGTTGCTCCAGAATATCTACTAGATGGAA 913
Query 1034 AACTGACGGATAAGAGTGATGTTTATGCATTTGGGGTAGTTCTGCTTGAACTCTTGTTGG 1093
|| |||| ||||||||||||||||| || |||||||| ||||| |||||||||||| | |
Sbjct 914 AATTGACCGATAAGAGTGATGTTTACGCGTTTGGGGTGGTTCTACTTGAACTCTTGCTAG 973
Query 1094 GTAGACGACCAGTTGAAAAATTAACTCCAGCTCAATGCCAATCTCTTGTAACTTGGGCAA 1153
| ||||| || ||||| ||||| | | | | ||| |||||||||||||| ||||||||||
Sbjct 974 GAAGACGGCCGGTTGAGAAATTGAGTTCGGTTCAGTGCCAATCTCTTGTCACTTGGGCAA 1033
Query 1154 TGCCACAACTTACCGATAGATCCAAGCTTCCAAACATTGTGGATGCC-GTTATAAAAGAT 1212
|||| |||||||| |||||||| ||||||||||| || |||||| || ||||| ||||||
Sbjct 1034 TGCCTCAACTTACGGATAGATCAAAGCTTCCAAAAATCGTGGAT-CCGGTTATCAAAGAT 1092
Query 1213 ACAATGGATC-TCAAACACTTATACCAGGTAGCAGCCATGGCTGTG-TTGTGCGTGCAGC 1270
|||||||||| | || |||||||||||||||||||| |||| ||| || ||||| || |
Sbjct 1093 ACAATGGATCAT-AAGCACTTATACCAGGTAGCAGCGGTGGCAGTGCTT-TGCGTACAAC 1150
Query 1271 CAGAACCAAGTTACCGGCCGTTGATAACCGATGTTCTTCACTCACTTGTTCCACTGGTTC 1330
||||||| ||||| || ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1151 CAGAACCGAGTTATCGACCGTTGATAACCGATGTTCTTCACTCACTTGTTCCGTTGGTTC 1210
Query 1331 CGGTAGAGCTAGGAGGGACTCTCCGGTTAA 1360
||||||||||||||||||||||||||||||
Sbjct 1211 CGGTAGAGCTAGGAGGGACTCTCCGGTTAA 1240
> Ahg932655 jgi|Araly1|932655|scaffold_400643.1
Length=206
Score = 117 bits (63), Expect = 3e-25
Identities = 65/66 (98%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 73 tctgcttcttctGCTTCAAATCCTTCTTTAGCTCCTGTTTACTCTTCCATGGCTACATTC 132
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 102 TCTTCTTCTTCTGCTTCAAATCCTTCTTTAGCTCCTGTTTACTCTTCCATGGCTACATTC 161
Query 133 TCTCCT 138
||||||
Sbjct 162 TCTCCT 167
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58925609015
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5