BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25230.1
Length=705
Score E
Sequences producing significant alignments: (Bits) Value
Ahg330465 jgi|Araly1|330465|fgenesh1_pm.C_scaffold_7002692 859 0.0
> Ahg330465 jgi|Araly1|330465|fgenesh1_pm.C_scaffold_7002692
Length=789
Score = 859 bits (465), Expect = 0.0
Identities = 629/708 (89%), Gaps = 12/708 (2%)
Strand=Plus/Plus
Query 1 ATGaaaaaaaaTTATCAAAAGAAGAATATAAAGGTGGTGAGCACAAGCAAATATTTGAAG 60
|||||||||| ||||||||||||||| | ||||| |||||||||||||||||||||||||
Sbjct 91 ATGAAAAAAACTTATCAAAAGAAGAAAAAAAAGGCGGTGAGCACAAGCAAATATTTGAAG 150
Query 61 AAAAGTGACATCGA-CAAAGTAAACTGGACAGAATCTGAGGACATAAAATTGAAAGAGAT 119
|| ||||||||| | ||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 151 AACAGTGACATC-ATCAAAGTAAAATGGACAGAATCTGAGGACATAAAATTGAAAGAGCT 209
Query 120 AATGGCGCTTGGAC-CCAAAAACAAATGGACAAAGGTCGCaaaaaaaTTCGAAGGAAGAA 178
|||||||||||| | || || |||||||||| | |||||||||| || |||||| |||
Sbjct 210 AATGGCGCTTGGGCTCC---AA-AAATGGACAACGATCGCAAAAAAGTTTGAAGGACGAA 265
Query 179 CAGGAAAACAATGCAGAGAGAGGTGGTATAACCATGCTCGTCCTAACATTAAGAAAACTG 238
|||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct 266 CAGGAAAACAATGCAGAGAGAGGTGGCATAACCATGCTGGTCCTGACATTAAGAAAACTA 325
Query 239 CTTGGAGTGAAGAAGAAGATCAAATTTTGATTGAAGCACACAAAGTACTTGGTACCAAAT 298
||||||||||||||||| ||||| |||||||||| |||||||||| |||||||| |||
Sbjct 326 AATGGAGTGAAGAAGAAGAACAAATATTGATTGAAGAACACAAAGTAGTTGGTACCCAAT 385
Query 299 GGGTCGAGATCGCACAGCAACTTCCGGGGAGGAGCGATAACAATATTAAGAACCATTGGA 358
|| || ||||||||||| ||||||||||||||||| |||||||| |||||||||||||||
Sbjct 386 GGATCAAGATCGCACAGAAACTTCCGGGGAGGAGCTATAACAATGTTAAGAACCATTGGA 445
Query 359 ACACCACAAAGCGTCGGGTGCAAAATAAAAGAGGTGGAACTGTCAACCCTGTCGGCAATA 418
||| |||||||||| |||||||||| |||| |||||||||||||| |||||||||||||
Sbjct 446 ACAGCACAAAGCGTAAGGTGCAAAATCAAAGTGGTGGAACTGTCAAACCTGTCGGCAATA 505
Query 419 ACATCCTTGAAAACTACATAAGGTGTATCACAATCAACAACGAAGATTTTCTTAAGACCG 478
|||||||||||||||||||||||| | |||||||||||||||| |||||||| |||||||
Sbjct 506 ACATCCTTGAAAACTACATAAGGTATGTCACAATCAACAACGATGATTTTCTCAAGACCG 565
Query 479 ATGGATCTTATGGTGAACCGACAAACATTGAGAGTGATGATGACTCTAAAGATATGTTAT 538
|| ||| |||||||| | ||||||| ||||| |||||||||||||| |||||||||||
Sbjct 566 CTGAATCCGATGGTGAAACAACAAACAGTGAGAATGATGATGACTCTATAGATATGTTAT 625
Query 539 ACGGGGAGATGAATTTGAGTCTAGAGACTATAACGACGCAGACCACCAAACCATTGACCA 598
| |||||||||||||||||||| ||| ||| | || | ||||||||||||||||||||
Sbjct 626 ATGGGGAGATGAATTTGAGTCTGGAGGCTACAGCG--G-AGACCACCAAACCATTGACCG 682
Query 599 ATGCTTCTACAACATCACCTTATGTTCAGATGCCAGAAGATAATTATACTATGGAGGATT 658
|||||||||||| || ||||||| ||| |||||||||||| |||| |||| |||||| ||
Sbjct 683 ATGCTTCTACAATATTACCTTATATTCCGATGCCAGAAGAGAATTCTACTGTGGAGGTTT 742
Query 659 GTGAATCACTGGAGGACATTCTAGAGCTGCTGC-GTTGGTGGGAATAA 705
|| || || |||||||||| || |||||||| | ||||||||||||||
Sbjct 743 GTAAAACAATGGAGGACATACTGGAGCTGCT-CAGTTGGTGGGAATAA 789
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25923583560
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5