BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25240.1
Length=1262
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481380 jgi|Araly1|481380|fgenesh2_kg.4__440__AT2G25240.1 1864 0.0
Ahg937184 jgi|Araly1|937184|scaffold_501375.1 902 0.0
> Ahg481380 jgi|Araly1|481380|fgenesh2_kg.4__440__AT2G25240.1
Length=1261
Score = 1864 bits (1009), Expect = 0.0
Identities = 1185/1269 (93%), Gaps = 15/1269 (1%)
Strand=Plus/Plus
Query 1 ATGGAGTTGGGAAAATCGATTGAGAACCATAACGACGTTGTGGTAAGACTAACGAAGCAT 60
||||||||||||||||| ||||||||||| |||||||| |||||||||||||| ||||||
Sbjct 1 ATGGAGTTGGGAAAATCAATTGAGAACCAAAACGACGTGGTGGTAAGACTAACAAAGCAT 60
Query 61 GTCATCGCTACCGTCGCCAATGGCTCCAATCTTGTCTTCTCACCGATATCAATCAACGTT 120
|||||| ||||| | |||||||| ||||| |||||||||||||| | ||||||||||||
Sbjct 61 GTCATCTCTACCATTGCCAATGGTTCCAACCTTGTCTTCTCACCAACGTCAATCAACGTT 120
Query 121 TTGCTCAGCCTCATCGCGGCAGGTTCATGTTCAGTCACCAAAGAACAAATCCTCTCATTC 180
|||||||||||||||||||| |||||| ||| || ||||| ||| ||||||||||||||
Sbjct 121 TTGCTCAGCCTCATCGCGGCCGGTTCAAGTTGTGTGACCAATGAAAAAATCCTCTCATTC 180
Query 181 CTCATGTTACCGTCAACGGATCACCTCAACCTAGTCTTGGCTC-AGATCATCGACGGCGG 239
|||||||||||||||||||||||||||||| |||||||||| | | ||||| |||||||
Sbjct 181 CTCATGTTACCGTCAACGGATCACCTCAACATAGTCTTGGC-CAAAATCATAGACGGCGA 239
Query 240 CACCGAGAAAAGTGATTTGCGCTTGTCTATAGCCAATGGTGTTTGGATAGACAAGTTTTT 299
||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 240 CACGGAGACAAGTGATTTGCGCTTGTCTATAGCCAATGGTGTTTGGATCGACAAGTTTTT 299
Query 300 CTCCTTGAAGCTTTCCTTTAAAGAC-CTTTTGGAGAATTCTTACAAGGCAACTTGTAGTC 358
||||||||||| ||||||||||| | ||||||||||||||||||||||| ||||||| ||
Sbjct 300 CTCCTTGAAGCCTTCCTTTAAAG-CGCTTTTGGAGAATTCTTACAAGGCTACTTGTAATC 358
Query 359 AAGTTGACTTCGCAAGCAAGCCTTCTGAAGTGATTGATGAGGTGAATACATGGGCTGAAG 418
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 359 AAGTTGACTTCGCAACCAAGCCTTCTGAAGTGATTGATGAGGTGAATACATGGGTTGAAG 418
Query 419 TCCACACCAATGGACTCATCAAGCAGATTCTTTCACGCGATTCTATCGATACTATCCGTA 478
|||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 419 TCCAAACTAATGGACTCATCAAGGAGATTCTTTCACGCGATTCTATCGATACTATCCGTA 478
Query 479 GCAGCACACTCGTTCTTGCAAATGCTGTATATTTCAAAGGAGCGTGGAGCAGTAAATTTG 538
||||||||||||||||||||||||| || || ||||||||||| ||||||||||||||||
Sbjct 479 GCAGCACACTCGTTCTTGCAAATGCAGTCTACTTCAAAGGAGCATGGAGCAGTAAATTTG 538
Query 539 ATGCAAACATGACaaaaaaaaaCGATTTTCATCTTCTTGATGGTACCTCGGTGAAAGTCC 598
|||||||| |||||||| | |||||||||||||| ||||| |||||||||||||||||||
Sbjct 539 ATGCAAACCTGACAAAAGATAACGATTTTCATCTGCTTGACGGTACCTCGGTGAAAGTCC 598
Query 599 CCTTTATGACCAATTACGAGGACCAGTACCTAAGAAGCTATGATGGTTTCAAAGTTTTGC 658
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 CCTTCATGACCAATTACGAGGACCAGTACCTAAGAAGCTATGATGGTTTCAAAGTTTTGC 658
Query 659 GCCTCCCTTATATAGAGGATCAACGTCAATTCTCCATGTACATTTATCTGCCTAATGATA 718
||||||||||||||||||||| |||||||||||| |||||||||||||| ||||| ||||
Sbjct 659 GCCTCCCTTATATAGAGGATCTACGTCAATTCTCTATGTACATTTATCTTCCTAACGATA 718
Query 719 AAGAAGGATTAGCTCCTCTGCTTGAGAAGATAGGCTCCGAACCA-AGTTTCTTCGATAAC 777
|||| ||||||||| |||||||||||| |||||||||||||||| | ||| ||||||||
Sbjct 719 AAGACGGATTAGCTGCTCTGCTTGAGATGATAGGCTCCGAACCAGAATTT-ATCGATAAC 777
Query 778 CATATTCCGCTCCACTGTATATCAGTTGGTGCTTTTAGAATCCCAAAGTTTAAATTCTCT 837
||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||
Sbjct 778 CATATTCCGCTCCACCGTATATCAGTTGGTGCTTTCCGGATCCCAAAGTTTAAATTCTCT 837
Query 838 TTCGAGTTTAATGCTTCAGAAGTTCTGAAAGATATGGGGCTGACTTCACCATTTAATAAT 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 TTCGAGTTTAATGCTTCAGAAGTTCTGAAAGATATGGGGCTGACTTCACCATTTAATAAT 897
Query 898 GGAGGTGGTTTAACTGAGATGGTTGATTCACCTTCCAATGGTG-ACGATCTATACGTCTC 956
|||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||
Sbjct 898 GGAGGTGGTTTAACTGAGATGGTTGATTCACCTTCCAACGGTGGA-GATCTATACGTCTC 956
Query 957 AAGCATTCTTCATAAAGCTTGTATTGAAGTGGATGAAGAGGGAACCGAAGCTGCAGCCGT 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 AAGCATTCTTCATAAAGCTTGTATTGAAGTGGATGAAGAGGGAACCGAAGCTGCAGCCGT 1016
Query 1017 CTCTGTTGGCGTCGTAA-GTTGCACTTCTTTTAGGCGGAATCCCGATTTCGTAGCTGACC 1075
||| ||||||||| ||| || |||||||||| ||||||||||| ||||||||||||||||
Sbjct 1017 CTCCGTTGGCGTCATAATGT-GCACTTCTTTGAGGCGGAATCCGGATTTCGTAGCTGACC 1075
Query 1076 GTCCATTTCTGTTCACTGTCAGAGAAGACAAGAGTGGAGTGATTTTGTTCATGGGTCAAG 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 GTCCATTTCTGTTCACTGTCAGAGAAGACAAGAGTGGAGTGATTTTGTTCATGGGTCAAG 1135
Query 1136 TTCTTGATCCTTCAAAACATTGATTGAACTGGGATGTG-GA-AGAAAACATTAAGCCACC 1193
||||||||||||||||||||| |||||||| ||||||| | ||||||||||||||||||
Sbjct 1136 TTCTTGATCCTTCAAAACATTAATTGAACTTGGATGTGTGGGAGAAAACATTAAGCCACC 1195
Query 1194 ATATGTTATGTTGTTGTATTTTGTTTATATTCATGGTTTGATGGAAGTGGGTTCCTCTTT 1253
|||| ||||||||| ||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 1196 ATATATTATGTTGT---ATTTTGTGTATATTCATGGTTTGATGGAATTGGGTTCCTCTTT 1252
Query 1254 CTACTGCTT 1262
||||||||
Sbjct 1253 TTACTGCTT 1261
> Ahg937184 jgi|Araly1|937184|scaffold_501375.1
Length=1225
Score = 902 bits (488), Expect = 0.0
Identities = 982/1211 (81%), Gaps = 72/1211 (6%)
Strand=Plus/Plus
Query 1 ATGGAGTTGGGAAAATCGATTGAGAACCATAACGACGTTGTGGTAAGACTAACGAAGCAT 60
||||||||||||||||| | ||||| || |||||||| ||||| |||| | ||||||
Sbjct 21 ATGGAGTTGGGAAAATCAACGGAGAATCAAAACGACGTCATGGTATTACTAGCAAAGCAT 80
Query 61 GTCATCGCTACCGTCGCCAATGGCTCCAATCTTGTCTTCTCACCGATATCAATCAACGTT 120
|||||||||||||| ||||| |||||||| || ||||||||||| || ||||||||| ||
Sbjct 81 GTCATCGCTACCGTTGCCAACGGCTCCAACCTCGTCTTCTCACCAATGTCAATCAACATT 140
Query 121 TTGCTCAGCCTCATCGCGGCAGGTT-CATGTTCAGTCACCAAAGAACAAATCCTCTCATT 179
|||||| |||| || || || |||| || | | |||||||||||||||||||| |||||
Sbjct 141 TTGCTCTGCCTGATTGCCGCTGGTTCCAACTGC-GTCACCAAAGAACAAATCCTATCATT 199
Query 180 CCTCATGTTACCGTCAACGGATCACCTCAAC-CTAGTCTTGGCTC-AGATC--ATC---- 231
||||| |||||| ||| |||||||||||||| | |||||||| | ||| | |||
Sbjct 200 CCTCACGTTACCCTCATCGGATCACCTCAACGC-GGTCTTGGC-CAAGACCGTATCTGTT 257
Query 232 GAC--GGC-G--GCA-CCGAGA-AAAGTGATTTGCGCTTGTCTATAGCCAATGGTGTTTG 284
| | || | | | |||| ||| ||| |||| ||| |||| || ||||||| ||
Sbjct 258 GCCTTCGCTGATGGATTGGAGAGAAA-TGACTTGCACTTATCTACGGCTTATGGTGTATG 316
Query 285 GATAGACAAGTTTTTCTCCTTGAAGCTTTCCTTTAAAGACCTTTTGGAGAATTCTTACAA 344
||| ||||| | ||| ||||| |||| |||||||||||| ||||||||||| || || ||
Sbjct 317 GATTGACAAATCTTTATCCTTCAAGCCTTCCTTTAAAGATCTTTTGGAGAACTCCTATAA 376
Query 345 GGCAACTTGTAGTCAAGTTGACTTCGCAAGCAAGCCTTCTGAAGTGATTGATGAGGTGAA 404
|| ||||||||||||| ||||||||||| ||| ||| ||||||||||| |||| |||||
Sbjct 377 CGCTACTTGTAGTCAAGCTGACTTCGCAACCAAACCTGCTGAAGTGATTAATGAAGTGAA 436
Query 405 TACATGGGCTGAAGTCCACACCAATGGACTCATC-AAGCAGATTCTTTCACGCGATTCTA 463
|||||||||||||| ||||||||||||||||||| ||| |||||||||||| ||||||||
Sbjct 437 TACATGGGCTGAAGCCCACACCAATGGACTCATCAAAG-AGATTCTTTCACACGATTCTA 495
Query 464 TCGATACTATCCGTAG-CAGCACACTCGT-TCTTGCAAATGCTGTATATTTCAAAGGAGC 521
|| | ||||||||| | || || || || | |||||||||| || || |||||||||||
Sbjct 496 TCAAGACTATCCGT-GAAAGTACGCTAGTAT-TTGCAAATGCAGTGTACTTCAAAGGAGC 553
Query 522 GTGGAGCAGTAAATTTGATGCAAACATGACaaaaaaaaaCGATTTTCATCTTCTTGATGG 581
||||||| |||||||||||||| | |||||||| |||||||| ||||||||||| ||
Sbjct 554 TTGGAGCAAAAAATTTGATGCAAAGTTAACAAAAAATAACGATTTCCATCTTCTTGACGG 613
Query 582 TACCTCGGTGAAAGTCCCCTTTATGACCAATTACGAGGACCAGTACCTAAGAA-GCTATG 640
||| |||||||||||||||| |||||||||||| || | || ||||| |||| ||||
Sbjct 614 CACCACGGTGAAAGTCCCCTTCATGACCAATTACAAGAAGCAATACCT-AGAATATTATG 672
Query 641 ATGGTTTCAAAGTTTTGCGCCTCCCTTATATAGAGGATCAACGTCAATTCTCCATGTACA 700
|||||| ||||||||||||||| |||||| |||||||||||||||||||| |||||||||
Sbjct 673 ATGGTTACAAAGTTTTGCGCCTTCCTTATGTAGAGGATCAACGTCAATTCGCCATGTACA 732
Query 701 TTTATCTGCCTAATGATAAAGAAGGATTAGCTCCTCTGCTTGA-GAAGATAGGCTCCGAA 759
||||||| |||||||| ||||| |||||| || |||||||||| ||| ||| ||||| ||
Sbjct 733 TTTATCTTCCTAATGACAAAGATGGATTACCTACTCTGCTTGACGAA-ATAAGCTCCAAA 791
Query 760 CCAAG-TTTCTTCGATAACCATATTCCGCTCCA-CTGTATATCAGTTGG-TGCTTTTAGA 816
|| | |||||| |||||||||||||||| ||| | |||||| || ||| | || ||
Sbjct 792 CCCGGATTTCTT-GATAACCATATTCCGCGCCAGC-GTATATTAG-TGGAACCGTTCGGA 848
Query 817 -ATCCCAAAGTTTAAATTCTCTTTCGAGTTTAATGCTTCAGAAGTTCTGAAAGATATGGG 875
|||| |||||||| |||||||| || ||||| |||||||| ||| |||| || |||||
Sbjct 849 GTTCCC-AAGTTTAAGTTCTCTTTTGAATTTAAAGCTTCAGATGTTTTGAAGGAAATGGG 907
Query 876 GCTGACTTCACCATTTAATA-ATGGAGGTGGTTTAACTGAGATGGTTGA-T--TC-ACC- 929
|||||||| ||||||| | | || ||| || |||| ||||||||||| | | ||
Sbjct 908 GCTGACTTTACCATTT-ACACAT---GGTAGTCTAACCGAGATGGTTGAGTCGCCTTCCA 963
Query 930 TT-CC----A---ATG-G-TGAC--G-ATCTATACGTCTCAAGCATTCTTCATAAAGCTT 976
|| || | ||| | || | | || | |||||||||| || |||| |||||||
Sbjct 964 TTCCCGAGAATCTATGTGTTGCCGAGAATTTGTACGTCTCAAATTTTTTTCACAAAGCTT 1023
Query 977 GTATTGAAGTGGATGAAGAGGGAACCGAAGCTGCAGCCGTCTCTGTTGGC-GTCGT-A-A 1033
| ||||| ||||||||||||||||| ||||||| ||||| ||||||| | | | | | |
Sbjct 1024 GCATTGAGGTGGATGAAGAGGGAACTGAAGCTGTTGCCGTTTCTGTTGCCAG-CATGACA 1082
Query 1034 GTTGCACTTCTT-TTAGGCGGAATCCCGATTTCGTAGCTGACCGTCCATTTCTGTTCACT 1092
| || | || || | || | |||||||||||||||| ||||||||| |||||
Sbjct 1083 -AAGGACATGTTGTT-GATGGGA----GATTTCGTAGCTGACCATCCATTTCTATTCACA 1136
Query 1093 GTCAGAGAAGACAAGAGTGGAGTGATTTTGTTCATGGGTCAAGTTCTTGATCCTTCAAAA 1152
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 GTGAGAGAAGAGAAGAGTGGAGTGATTTTGTTCATGGGTCAAGTTCTTGATCCTTCAAAA 1196
Query 1153 CATTGATTGAA 1163
|||||||||||
Sbjct 1197 CATTGATTGAA 1207
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47158048329
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5