BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G25250.1

Length=879
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg932662 jgi|Araly1|932662|scaffold_400650.1                        425    2e-118


> Ahg932662 jgi|Araly1|932662|scaffold_400650.1
Length=455

 Score =  425 bits (230),  Expect = 2e-118
 Identities = 360/419 (86%), Gaps = 23/419 (5%)
 Strand=Plus/Plus

Query  180  TCATAAAAAACCGATCACCAATCGCCGTCGCCGGAGTCCGTCAAGTCACCAATCCCAGAT  239
            |||||||||| || | || ||||||||||||||||||||| || |||||||| ||| |||
Sbjct  56   TCATAAAAAATCGGTAACAAATCGCCGTCGCCGGAGTCCGCCACGTCACCAAACCCCGAT  115

Query  240  CTCTCATCCTCCTCCGTCTCCTCAT-AACCACACCAATCATGTACGAATTCTGAAGCGTG  298
            |||||||||||||||| |||||| | |||||||||||||  |||||||||||||| ||||
Sbjct  116  CTCTCATCCTCCTCCGCCTCCTC-TCAACCACACCAATCCGGTACGAATTCTGAAACGTG  174

Query  299  GCGAAGATATCAACGTTAAGATACCGATTGAAAAACCAGATCTGAAATC-TAATCGTCAG  357
            |||||||||||| |||||||||||| |||||||| |||||||||||| | ||| ||||| 
Sbjct  175  GCGAAGATATCACCGTTAAGATACCAATTGAAAAGCCAGATCTGAAA-CTTAACCGTCAA  233

Query  358  ATCGGATCAGATCCGATGAAAATTTC-GACTCCGATCAGAATTTCAAATCGGAAATCC-A  415
            ||||| ||||||||| | || ||||| || |||||| |||||| |||| |||||| || |
Sbjct  234  ATCGGTTCAGATCCGGTTAAGATTTCGGA-TCCGATTAGAATTCCAAACCGGAAA-CCGA  291

Query  416  TGCCGGCTTTGTTTTACGCTGGTCCAGTCACATCAACATCTCCGCCGCCGAGTGAAGTCC  475
            ||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||
Sbjct  292  TGCCGGCTTTGTTTTACGCTGGTCCAGTCACATCAACCTCTCCGCCGCCTAGCGAAGTCC  351

Query  476  CTTTACCGGCTTTCTTCGCTAATAAAACCGTCGCCGGATTCAAACCGACCGATGCAACCA  535
            |||||||||| ||||||||||| |||| ||||      | |   | ||    |||||| |
Sbjct  352  CTTTACCGGCGTTCTTCGCTAAGAAAAACGTC------T-C---C-GA----TGCAACTA  396

Query  536  ACGATCTGATCAAAATCCTGCGATTAGATATCGCATGATTCATTTCTTTCTCCGATCAT  594
            | ||||| |||| ||||||||| || |||||||||||||||||||||||||||||||||
Sbjct  397  ATGATCTCATCAGAATCCTGCGTTTGGATATCGCATGATTCATTTCTTTCTCCGATCAT  455



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32556971118


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5