BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25260.1
Length=1176
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481381 jgi|Araly1|481381|fgenesh2_kg.4__441__AT2G25260.1 1784 0.0
Ahg942084 jgi|Araly1|942084|scaffold_602628.1 411 8e-114
> Ahg481381 jgi|Araly1|481381|fgenesh2_kg.4__441__AT2G25260.1
Length=1130
Score = 1784 bits (966), Expect = 0.0
Identities = 1079/1133 (95%), Gaps = 9/1133 (1%)
Strand=Plus/Plus
Query 1 GAGAAAATGGGATTCCGTGGGAAGTACTTCTTCCCAATTCTCATGACTCTATCGTTATTT 60
|||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 GAGAAAATGGGATTTCGTGGGAAGTTTTTCTTCCCAATTCTCATGACTCTATCGTTATTT 60
Query 61 CTAATAATCAGATACAACTACATAGTCTCCGATGATCCTCCTCTCCGGCAAGAACTCCCC 120
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 61 CTAATAATTAGATACAACTACATAGTCTCCGATGATCCTCCTCTCCGGCAAGAATTCCCC 120
Query 121 GGTCGCCGATCAGCTTCTTCCGGAGATGACATCACATATACCGTCAAGACTCCGTCAAAG 180
||||||||| |||| |||||| ||||||| |||||||| ||||||||||||||||||||
Sbjct 121 GGTCGCCGAGCAGCCTCTTCCAGAGATGAGGTCACATATTCCGTCAAGACTCCGTCAAAG 180
Query 181 AAGACAAAGAGACTGTTTCACACGGCGGTGACAGCCACGGATTCCGTGTACAGCACGTGG 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 AAGACAAAGAGACTGTTTCACACGGCGGTGACAGCCACGGATTCCGTGTATAGCACGTGG 240
Query 241 CAGTGTCGGGTCATGTATTATTGGTACAACAGGTTCAGGGACGAACCCGGG-TCGGATAT 299
||||||||||||||||| ||||||||||||||||||||||| ||| ||||| ||||||||
Sbjct 241 CAGTGTCGGGTCATGTACTATTGGTACAACAGGTTCAGGGATGAA-CCGGGATCGGATAT 299
Query 300 GGGCGGGTATACCCGGATCTTGCATTCGGGTCGACCCGATGGACTCATGGATGAGATCCC 359
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GGGTGGGTATACCCGGATCTTGCATTCGGGTCGACCCGATGGACTCATGGATGAGATCCC 359
Query 360 TA-CTTTCGTTGCTGACCCTCTTCCCTCCGGTGTTGACAAGGGATATGTTGTTCTAAATA 418
|| |||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 360 TACCTTT-GTTGCTGACCCTCTTCCTTCCGGTGTTGACAAGGGATATGTAGTTCTAAATA 418
Query 419 GGCCTTGGGCCTTTGTTCAATGGCTTCAACAAGCACATATAGAGGAAGATTACATTCTCA 478
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GGCCTTGGGCGTTTGTACAATGGCTTCAACAAGCACATATAGAGGAAGATTACATTCTCA 478
Query 479 TGGCGGAACCTGATCATATCATAGTTAAACCGATACCAAACCTAGCTAGAGGCAATCTCG 538
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 479 TGGCGGAACCTGATCATATCATAGTTAAACCAATACCAAACCTAGCCAGAGGCAATCTCG 538
Query 539 CGGCTGCGTTTCCCTTTTTCTACATTGAACCAAAGAAATATGAATCGGTTCTCCGCAAAT 598
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 539 CGGCTGCGTTTCCCTTTTTCTACATTGAACCGAAGAAATATGAATCGGTTCTCCGCAAAT 598
Query 599 TCTTCCCCAAAGAGAATGGACCAATATCAAGAATCGATCCCATCGGGAATTCTCCAGTGA 658
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 599 TCTTCCCCAAAGAGAATGGACCGATATCAAGAATTGATCCCATCGGGAATTCTCCAGTGA 658
Query 659 TCGTCACTAAGAATGCATTAATGAAAATTGCTCCAACATGGATGAATGTTTCTTTGGCTA 718
| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 659 TTGTCACTAAGAATGCATTGATGAAAATTGCTCCAACATGGATGAACGTTTCTTTGGCTA 718
Query 719 TGAAGAATGACCCACAAACAGATAAAGCTTTTGGTTGGGTCCTTGAAATGTATGCATATG 778
|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 719 TGAAAAATGACCCACAAACAGATAAAGCTTTTGGTTGGGTTCTTGAAATGTATGCATACG 778
Query 779 CTGTTTCTTCTGCGTTACACGGCGTGAGCAACATTCTACACAAGGACTTCATGATTCAGC 838
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 779 CTGTTTCTTCTGCGTTACACGGCGTGAGCAACATTCTACACAAAGACTTCATGATTCAGC 838
Query 839 CTCCTTGGGACACTGAAACAAAGAAGACGTTCATAATACATTACACTTACGGCTGTGATT 898
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 839 CTCCTTGGGACACCGAAACAAAGAACACGTTCATAATACATTACACTTACGGCTGCGATT 898
Query 899 TCGACATGAAGGGGAAGATGATGGTAGGGAAGATTGGAGAATGGAGATTCGATAAACGGT 958
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 899 TCGACATGAAGGGGAAGATGATGGTAGGAAAGATTGGAGAATGGAGATTCGATAAACGGT 958
Query 959 CTTACGGG-GATAAACCACCCCCAAGAAATCTCACACTGCCTCCCCGAGGTGTTCCCGAG 1017
||||||| | |||||| ||||||||||||||| || ||||||| | |||||||||||||
Sbjct 959 CTTACGGTAG-TAAACCGCCCCCAAGAAATCTCCCATTGCCTCCACAAGGTGTTCCCGAG 1017
Query 1018 AGCGTGGTGACATTGGTGACAATGATAAACGAAGCTACTGCTAATATTCCCAACTGGGAA 1077
|||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||
Sbjct 1018 AGCGTGGTGACATTGGTGACAATGGTGAACGAAGCTACAGCTAATATTCCCAACTGGGAA 1077
Query 1078 TCTTGAAAAGAAATTCttttttt---CCTAAGCAAGACTCTATTCCTTTAATT 1127
||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1078 TCTTGAAAAGAAATTCTTTTTTTTTTCCTAAACAAGACTCTATTCCTTTAATT 1130
> Ahg942084 jgi|Araly1|942084|scaffold_602628.1
Length=1144
Score = 411 bits (222), Expect = 8e-114
Identities = 700/924 (76%), Gaps = 60/924 (6%)
Strand=Plus/Plus
Query 189 GAGACTGTTT-CACACGGCGGTGACAGCCACGGATTCCGTGTACAGCACGTGGCAGTGTC 247
|||||| ||| |||||||||||||| || | |||||||| |||| ||| ||||| |||
Sbjct 224 GAGACT-TTTCCACACGGCGGTGACTGCGTCTGATTCCGTCTACAACACTTGGCAATGTA 282
Query 248 GGGTCATGTATTATTGGTAC-AACAGGTTC-AG----GGAC-GAACCCGGGTCGGATATG 300
| || ||||| ||||||| | || |||||| || | | | |||||| || || |||
Sbjct 283 GAGTTATGTACTATTGGTTCAAAAAGGTTCAAGCTTCTG-CTGGACCCGGTTCTGAAATG 341
Query 301 GGCGGGTATACCCGGATCTTGCATTCGGGTCGACCCGATGGACT-CATGGATGAGATCCC 359
|| |||| ||| |||||||||||||| ||| ||| ||| | | ||||||||||| ||
Sbjct 342 GGTGGGTTTACTCGGATCTTGCATTCTGGTAAACCGGAT-CAGTATATGGATGAGATTCC 400
Query 360 TACTTTCGTTGCTGACCCTCTT-CCCTCCGGTG-TTGA-CAAGGGATATGTTGT-TCTAA 415
|||||| |||||| | ||| || || || || | | || | |||| ||| |||| | | |
Sbjct 401 TACTTTTGTTGCTCAGCCT-TTACCTTCTGG-GATGGATC-AGGGTTATATTGTGT-TGA 456
Query 416 ATAGGCCTTGGGCCTTTGTTCAATGGCTTCAACAAGCACATA-TAGAGGAAGATTACATT 474
||||||| ||||| ||||| ||||||||||||||| || ||| || | |||||||| |||
Sbjct 457 ATAGGCCATGGGCATTTGTACAATGGCTTCAACAAACAGATATTA-AAGAAGATTATATT 515
Query 475 CTCATGGCGGAACCTGATCATATCATAGTTAAACCGATACCAAACCTAGCTAGAGGCAAT 534
| ||| | || |||||||||||||| |||||||| |||||||| |||||| ||
Sbjct 516 TTGATGTCTGAGCCTGATCATATCATTGTTAAACCTATACCAAATTTAGCTAAAGATGGG 575
Query 535 CTCGCG-GCTGCGTTTCCCTTT-TTCTACATTGAACC-AAAGAAATATGA-ATCGGT-TC 589
|| | | ||||| ||| ||||| || ||||||||||| ||| || ||||| | ||| |
Sbjct 576 CTTG-GAGCTGC-TTTTCCTTTCTTTTACATTGAACCGAAA-AAGTATGAGA-AGGTGT- 630
Query 590 TCCGCAAATTCTTCCCCA-AAGAGA-ATGGACC-AATATC-AAGAATCGATCCCATCGGG 645
| | || | || ||| |||||| | ||||| || | || |||||||| || ||
Sbjct 631 TGAG-GAAGTATTATCCAGAAGAGAGA-GGACCGGTTA-CTAA-TATCGATCCGATAGGA 686
Query 646 AATTCTCCAGTGATCGTCACTAAGAATGCATTAATGAAAATTGCTCCAACATGGATGAAT 705
|| ||||| || || || ||| |||| |||| ||| || |||||||| |||||||||
Sbjct 687 AACTCTCCTGTCATTGTGGGAAAGGATGCTTTAAAGAAGATAGCTCCAACTTGGATGAAT 746
Query 706 GTTTCTTTGGCTATGAAGAATGACCCACAAACAGATAAAGCTTTTGGTTGGGTCCTTGAA 765
|||||||||||||||||||| || || || |||| || |||||||| ||||| ||||||
Sbjct 747 GTTTCTTTGGCTATGAAGAAGGATCCTGAAGCAGACAAGGCTTTTGGATGGGTTCTTGAA 806
Query 766 ATGTATGCATATGCTGTTTCTTCTGCGTTACACGGCGTGAGCAACATTCTACACAAGGAC 825
|||||||| |||||||| || ||||| || || || || ||||| ||||||||||| |||
Sbjct 807 ATGTATGCTTATGCTGTCTCATCTGCATTGCATGGTGTTAGCAATATTCTACACAAAGAC 866
Query 826 TTCATGATTCAGCCTCCTTGGGACACTGAAACAAAGAAGAC--GTTCATAATACATTACA 883
||||||||||||||||| ||||| | | | | | ||| || ||| ||||| ||||
Sbjct 867 TTCATGATTCAGCCTCCATGGGATA-T-AGAGGTTGGTGACAAGTACATCATACACTACA 924
Query 884 CTTACGGCTGTGATTTCGACATGAAGGGGAAGATGATGGTA-GGGAAGATTGGAG-AATG 941
|||| || || || | ||| ||||| || || || | || ||||| || || | ||||
Sbjct 925 CTTATGGATGCGACTACGATATGAATGGTAA-ATTAACCTATGGGAAAATCGG-GCAATG 982
Query 942 GAGATTCGATAAACGGTCTTACGGGGATA--A-ACCACCCCCAAGAAATCTCACACTGCC 998
|||||| || ||| | || || | ||| | |||||| ||||| || || ||| ||||
Sbjct 983 GAGATTTGACAAAAGATCGTATG---ATAGCACACCACCACCAAGGAACCTTACAATGCC 1039
Query 999 TCC-CCGAGGTGTTCC-CGAGAGCGTGGTGACATTGGTGACA-ATGATAAACGAAGCTAC 1055
||| || |||||| | | | || ||||| ||| | |||| | |||||||| ||||| ||
Sbjct 1040 TCCACCT-GGTGTTTCACAA-AGTGTGGTAACACTAGTGA-AGATGATAAATGAAGCCAC 1096
Query 1056 TGCTAATATTCCCAACTGGGAATC 1079
|| || || || ||||||| |||
Sbjct 1097 GGCCAACATACCAAACTGGGGATC 1120
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43879477467
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5