BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25270.1
Length=1903
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481382 jgi|Araly1|481382|fgenesh2_kg.4__442__AT2G25270.1 2614 0.0
> Ahg481382 jgi|Araly1|481382|fgenesh2_kg.4__442__AT2G25270.1
Length=1771
Score = 2614 bits (1415), Expect = 0.0
Identities = 1625/1727 (94%), Gaps = 11/1727 (1%)
Strand=Plus/Plus
Query 46 AGTAGTAGTAATGtctcttc-t-tcttc-tcttctgttgcttctttacctctctttctat 102
||||||| |||||||||||| | ||||| ||||||||||| |||| | | ||||| |
Sbjct 1 AGTAGTACTAATGTCTCTTCTTCTCTTCTTCTTCTGTTGCCTCTTGA---C-CTTTC--T 54
Query 103 ttctcattctcATGGAGCTTCCACTATTCACATTTCTCCTACTCAGCCTCCCGCAGCTTC 162
||||| |||||||| |||||| ||||||||||||||||||||||||||||| | ||||||
Sbjct 55 TTCTCTTTCTCATGAAGCTTCTACTATTCACATTTCTCCTACTCAGCCTCCAGTAGCTTC 114
Query 163 TTCGGAGAAAACCGGTTCTGTAATGAAATTTATAGTAGCAGAGGCACCATTATTAGGACC 222
||| |||||||| ||||||||||||||||||||||| |||||||| |||||||| |||||
Sbjct 115 TTCAGAGAAAACTGGTTCTGTAATGAAATTTATAGTGGCAGAGGCGCCATTATTGGGACC 174
Query 223 TGCAGGTTTCAACAACCCTCAAGTAATTGAAGTTGCTTCAGTAGCTTTAGCTGCTCAAAG 282
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 175 TGGAGGTTTCAACAACCCTCAAGTAAATGAAGTTGCTTCAGTAGCTTTAGCTGCTCAAAG 234
Query 283 AACATATAGAAAAGATCCTCTCAATGGTTTTGAGAAATATACTGGAGGATGGAATATCAG 342
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 235 AACATATAGAAAAGATCCTCTTAATGGTTTTGAGAAATATACTGGAGGATGGAATATCAG 294
Query 343 CAACCAACATTACTGGGCTTCAGTGAGCTATACAGCTGTTCCTCTCTTTGTTCTTGCTGC 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 CAACCAACATTACTGGGCTTCAGTGAGCTATACAGCTGTTCCTCTCTTTGTTCTTGCTGC 354
Query 403 TGTTTGGTTTCTTGGGTTTGGCATCTGTTTATTAGTCATCTGTATGTGTCACATTTGCCA 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 TGTTTGGTTTCTTGGGTTTGGCATCTGTTTATTAGTCATCTGTATGTGTCACATTTGCCA 414
Query 463 TAGAACCAATTCTGTTGGATACTCTAAAGTTGCTTATGTTGTCTCCCTCATCTTCCTCCT 522
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 TAGAACCAACTCTGTTGGATACTCTAAAGTTGCTTATGTTGTCTCCCTCATCTTCCTCCT 474
Query 523 CATCTTCACTGTTATTGCAATAATCGGATGTGTTCTGCTATACTCGGGTCAGATAAGGTA 582
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||
Sbjct 475 CATCTTCACTGTTATTGCAATAATCGGATGTGTTCTTCTATATTCGGGTCAGATCAGGTA 534
Query 583 TAATAAAAGCACGACAGAGACATTAGAGTATGTCATGAGTCAAGCAGATAGCACGATTTC 642
|| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 535 CAACAAAAGCACGACAGAGACATTACAGTATGTCATGAGTCAAGCGGATAGCACGATTTC 594
Query 643 GCAGCTTAGAGCTATCTCAGATTATCTTGCTTCAGCCAAGCAGGCTGCAGTTCTTCAGGT 702
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 595 ACAGCTTAGAGCTATCTCTGATTATCTTGCTTCAGCTAAGCAGGCTGCAGTTCTTCAGGT 654
Query 703 TCTTTTACCTGCAAATGTACAAACTGAAATCGATCAGATCGGAGTGAAACTGGATTCTTC 762
|||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||
Sbjct 655 TCTTTTACCTGCAAATGTCCAAACTGAAATCGATCAGATCGGAGCGAAACTGAATTCTTC 714
Query 763 TGTAGCTACTATCACTGAGAAATCGACTAATAGCTCCAATCACATAAGACATTTTCTTGA 822
||||||||| |||||||||||||||||||||||||||||| |||| |||||||| |||||
Sbjct 715 TGTAGCTACCATCACTGAGAAATCGACTAATAGCTCCAATAACATTAGACATTTCCTTGA 774
Query 823 TTCTGTGAGAGTAGCGCTTATTGTAGTTTCAATCGTCATGCTTGTGGTGACTTTTCTTGG 882
||||||||| ||||||||||| ||||||||||| ||||||||||| ||||| ||||||||
Sbjct 775 TTCTGTGAGTGTAGCGCTTATCGTAGTTTCAATTGTCATGCTTGTCGTGACATTTCTTGG 834
Query 883 TCTCGTTTCTTCGATTTTCGGGATGCAGGTCATCGTTTACACCCTTGTGATCTTGGGATG 942
|||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 835 TCTCGTTTCTTCAATTTTCGGGATGCAGGTCATCGTTTACACACTTGTGATTTTGGGATG 894
Query 943 GATTCTGGTGACTGGTACATTCATCTTGAGTGGAACATTCCTTGTGCTACACAATGCAAC 1002
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 895 GATTCTGGTGACTGGTACATTCATTTTGAGCGGAACATTCCTTGTGCTACACAATGCAAC 954
Query 1003 TGCAGACACATGTGTGGCAATGAGCGAATGGGTTGAGAGACCATCAAGCAATACGGCTCT 1062
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 955 TGCAGACACATGTGTGGCAATGAGCGAATGGGTTGAGAGACCATCAAGCAACACGGCTTT 1014
Query 1063 GGACGAGATATTGCCTTGTACAGACAATGCCACAGCTCAGGAAACCTTGATGCGTAGCAG 1122
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1015 GGACGAGATCTTGCCTTGTACAGACAATGCCACTGCTCAGGAAACCTTGATGCGTAGCAG 1074
Query 1123 AGAAGTGAC-GGGTCAGCTTGTGGAGCTAATCAACACAGTCATCACTAATGTCTCCAACA 1181
||| ||||| ||| ||||| ||||| ||||||||||||||||| ||||||||||| ||||
Sbjct 1075 AGAGGTGACAGGG-CAGCTCGTGGATCTAATCAACACAGTCATTACTAATGTCTCTAACA 1133
Query 1182 TCAACTTCTCTCCAGTCTTTGTCCCAATGTATTATAACCAATCTGGACCGTTGCTTCCAT 1241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 TCAACTTCTCTCCAGTCTTTGTCCCAATGTATTATAACCAATCTGGACCGTTGCTTCCAT 1193
Query 1242 TGCTCTGCAATCCTTTTAACCATGACCTTACCGATCGCTCTTGCTCGCCTGGTGATCTCG 1301
||||||||||||||||||||||||||||||||||||| ||||| || |||||||| ||||
Sbjct 1194 TGCTCTGCAATCCTTTTAACCATGACCTTACCGATCGTTCTTGTTCCCCTGGTGAGCTCG 1253
Query 1302 ATTTGAACAATGCTACTGAAGCATGGACCAGTTTCGTGTGCCAAGTGAGCCAGAACGGGA 1361
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 ATTTGAACAATGCTACTCAAGCATGGACCAGTTTCGTGTGCCAAGTGAGCCAGAACGGGA 1313
Query 1362 CTTGCACCACAACAGGAAGGCTTACACCTGCGCTGTACAGTCAGATGGCATCAGGTGTTA 1421
||||| |||||||||| ||||| ||||| ||| |||| ||||||||||||||||| || |
Sbjct 1314 CTTGCGCCACAACAGGGAGGCTCACACCGGCGTTGTATAGTCAGATGGCATCAGGAGTGA 1373
Query 1422 ATATCAGCACGGGATTGATCAGAGACGCGCCATTCCTGGTCCAGCTTCAGGACTGTTCAT 1481
| ||||||||||| || |||||||| || || ||||| ||| ||||||||||||||||||
Sbjct 1374 ACATCAGCACGGGGTTAATCAGAGATGCACCGTTCCTTGTCGAGCTTCAGGACTGTTCAT 1433
Query 1482 ACGCAAAACAGACCTTTAGAGACATAACGAATGACCATTGTCCTGGACTACAGCGTTATG 1541
| ||||| |||||||||||||||||||| |||||||||||||||||||| || |||||||
Sbjct 1434 ATGCAAAGCAGACCTTTAGAGACATAACCAATGACCATTGTCCTGGACTCCAACGTTATG 1493
Query 1542 GCTATTGGGTCTATGTGGGTCTGGCCATTTTAGCAACGGCTGTGATGCTCTCACTTATGT 1601
|||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct 1494 GCTATTGGGTCTATGTGGGTCTGGCCATATTAGCGACCGCTGTGATGCTCTCACTTATGT 1553
Query 1602 TCTGGATCATTTACAGTAGAGAGCGAAGGCATCGGAAGGAAGCTCTGCCTGAATTTTCTG 1661
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 1554 TCTGGATCATTTACAGTAGAGAGAGAAGGCATCGGAAGGAAGCTCTGCCTGAATTTTCAG 1613
Query 1662 AAAGTAAGGAGATTGTAAGAGTTAACTTTTGATGTATGTCTCTGTAGATCTTAAGCAAAA 1721
| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1614 ACAGTAAGGAGATTGTAAGAGTTAACTTTTGATGTATGCCTCTGTAGATCTTAAGCAAAG 1673
Query 1722 TGTTTCAAGTCTCAAGATACTTGATTTGTGCTTTCATGTCTGAACAT 1768
||||| ||||||||| | ||||||||||||||||| |||||||||||
Sbjct 1674 TGTTTTAAGTCTCAACACACTTGATTTGTGCTTTCTTGTCTGAACAT 1720
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71495389865
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5