BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25280.1
Length=1339
Score E
Sequences producing significant alignments: (Bits) Value
Ahg899958 jgi|Araly1|899958|Al_scaffold_0004_608 1419 0.0
> Ahg899958 jgi|Araly1|899958|Al_scaffold_0004_608
Length=876
Score = 1419 bits (768), Expect = 0.0
Identities = 841/877 (96%), Gaps = 2/877 (0%)
Strand=Plus/Plus
Query 180 ATGGAG-AAGATAAGACAACCAACACATGCAGGCTCTTGGTATACCGATAATCCTACAAA 238
|||||| ||| | ||||||||||| |||||||||||||||||||||||||| ||||| ||
Sbjct 1 ATGGAGAAAG-TGAGACAACCAACGCATGCAGGCTCTTGGTATACCGATAACCCTACGAA 59
Query 239 ATTGTCATCTGATCTTGAAGAATGGCTTAATGCAACTGGTTTGACCAAATCTCCTGATGT 298
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 60 GTTGTCATCTGATCTTGAAGAATGGCTTAGTGCAACTGGTTTGACCAAATCTCCTCATGT 119
Query 299 ACGAGGCGTCATTGCACCACACGCAGGTTATTCGTACTCCGGTCGTGCAGCTGCTTATGC 358
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 120 TCGAGGCGTCATTGCACCACACGCAGGTTATTCGTATTCCGGTCGTGCCGCTGCTTATGC 179
Query 359 TTTTGCAAACATAGATCCTACTAACATTTCACGGATATTTCTTCTTGGTCCATCTCACCA 418
|||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 180 TTTTGCAAACATTGATCCTACTAATATTTCGCGGATATTTCTTCTTGGTCCATCTCACCA 239
Query 419 CTTTTATACTCCAAAATGTGCCCTTTCGACTGCAACAGTTTATAAAACCCCCATTGGAAA 478
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 240 TTTTTATACTCCAAAATGTGCCCTTTCGACTGCAACAGTTTACAAAACCCCCATTGGAGA 299
Query 479 TCTACCTGTTGATGTGGAGATGATTAAGGAGATACGAGCTATGGGAAAATTTGGAATGAT 538
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 300 TCTACCCGTTGATGTGGAGATGATTAAGGAGATAAGAGCTATGGGAAAATTTGGAATGAT 359
Query 539 GGATCTACGGGTCGATGAGGCTGAGCACAGCATGGAAATGCACTTACCGTATTTGGCCAA 598
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 360 GGATCTACGGGTCGATGAGGCTGAACACAGCATGGAAATGCACTTACCGTATTTGGCCAA 419
Query 599 AGTATTTGAAGGGAACAATGTGAAAGTTGTACCCATCTTGGTTGGAGCAGTAAGTCCAGA 658
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 420 AGTATTTAAAGGGCACAATGTGAAAGTTGTACCCATCTTGGTTGGAGCAGTAAGTGCAGA 479
Query 659 GAATGAAGCCATGTACGGTGAATTGCTTGCTAAATATGTGGACGATCCCAAGAACTTTTT 718
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 480 AAATGAAGCCATGTACGGTGAATTGCTTGCTAAATATGTGGATGATCCCAAGAACTTTTT 539
Query 719 CTCAGTGTCCTCTGACTTTTGCCACTGGGGCTCAAGGTTTAATTACATGCATTATGACAA 778
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 540 CTCAGTGTCCTCTGACTTTTGCCACTGGGGCTCACGGTTCAATTACATGCATTATGACAA 599
Query 779 CACTCATGGTGCTATACACAAATCGATTGAGGCTCTAGACAAGAAGGGAATGGATATAAT 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CACTCATGGTGCTATACACAAATCGATTGAGGCTCTAGACAAGAAGGGAATGGATATAAT 659
Query 839 AGAGACAGGAGATCCTGATGCCTTTAAGAAGTATCTTCTGGAATTTGAAAACACGATTTG 898
|||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 660 AGAGACCGGAGATCCAGATGCCTTTAAGAAGTATCTTCTGGAATTTGAGAACACGATTTG 719
Query 899 TGGGCGCCACCCGATCAGTATTTTTCTCCATATGCTAAAACATTCATCAAGCAAGATTAA 958
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 720 TGGGCGCCACCCAATCAGTATTTTTCTCCATATGCTAAAACATTCCTCAAGCAAGATTAA 779
Query 959 GATCAATTTCCTGCGGTACGAGCAGTCAAGCCAATGCCAGACAATGCGAGACAGCAGTGT 1018
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 780 GATCAATTTCCTGCGGTACGAGCAGTCAAGCCAATGCCAGACAATGCGGGACAGCAGTGT 839
Query 1019 CAGCTATGCATCTGCTGCAGCCAAGTTGGAAACATGA 1055
||| ||||||||||||||||||||||||||||| |||
Sbjct 840 CAGTTATGCATCTGCTGCAGCCAAGTTGGAAACTTGA 876
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50093512938
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5