BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25290.1
Length=2743
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481385 jgi|Araly1|481385|fgenesh2_kg.4__445__AT2G25290.1 3158 0.0
Ahg353623 jgi|Araly1|353623|fgenesh1_pg.C_scaffold_7000796 1371 0.0
Ahg899960 jgi|Araly1|899960|Al_scaffold_0004_610 268 1e-70
> Ahg481385 jgi|Araly1|481385|fgenesh2_kg.4__445__AT2G25290.1
Length=2196
Score = 3158 bits (1710), Expect = 0.0
Identities = 2054/2211 (93%), Gaps = 60/2211 (3%)
Strand=Plus/Plus
Query 1 CATTtctctctctctctctcGCGATC-AAAATTGTTAAACAATCTCTTAGAAGAAATTCA 59
|||| ||||||||||||||| ||||| ||||||||| ||| || || | ||||||||||
Sbjct 1 CATTCCTCTCTCTCTCTCTC-CGATCAAAAATTGTT-AAC-ATTTC-T--AAGAAATTCA 54
Query 60 AATTCTCTCTGTTTCAATTGCGATTCAAATTTCAAAAACTGACAATGGGGAAACCAACGG 119
|| | ||||||||||||| ||||||||||||| | | |||||||||||||||||
Sbjct 55 AA-T-TCTCTGTTTCAATCGCGATTCAAATTT------C--A-AATGGGGAAACCAACGG 103
Query 120 GGAAGAAGAAGAATAATAATTATACCGAGATGCCACCGACGGAATCTTCCACCACCGGCG 179
||||||||||| ||||| | ||||||| || ||||||| |||||||||| |||||
Sbjct 104 GGAAGAAGAAG---AATAA--CT-CCGAGATCCCGGCGACGGATTCTTCCACCAGCGGCG 157
Query 180 GAGGTAAGACCGGCAAAAGCTTCGATCGATCAGCAACCAAATCATTCGACGACGACATGA 239
||||||||||||| |||||||||||||||||| ||||||||||||||||| |||| ||||
Sbjct 158 GAGGTAAGACCGGAAAAAGCTTCGATCGATCAACAACCAAATCATTCGACAACGATATGA 217
Query 240 CGATCTTCATAAATCGAGCATTGGAGCTAAAAGAAGAAGGCAACAAATTATTCCAGAAAC 299
| |||||||||||||||||||| || || |||||||||||||||||||||||||||||||
Sbjct 218 CAATCTTCATAAATCGAGCATTAGAACTCAAAGAAGAAGGCAACAAATTATTCCAGAAAC 277
Query 300 GCGATTACGAAGGAGCAATGTTTAGGTATGATAAAGCCGTTAAGCTATTACCTAGAGATC 359
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 278 GTGATAACGAAGGAGCAATGTTTAGGTATGATAAAGCCGTTAAGCTATTACCTAGAGATC 337
Query 360 ATGGAGATGTAGCTTATTTGAGAACAAGTATGGCTTCTTGTTACATGCAAATGGGATTAG 419
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 338 ATGGAGATGTAGCTTATTTGAGAACAAGTATGGCTTCTTGTTATATGCAAATGGGATTAG 397
Query 420 GAGAATATCCTAATGCGATTAACGAATGTAATTTGGCTTTAGAAGCTTCTCCTAGGTTTA 479
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 398 GAGAGTATCCTAATGCGATTAACGAATGTAATTTGGCTTTAGAGGCTTCTCCTAGGTTTA 457
Query 480 GTAAAGCTTTGTTGAAACGAGCTCGTTGTTACGAGGCTTTGAATAAACTGGATTTCGCGT 539
||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |
Sbjct 458 GTAAAGCTTTGTTGAAACGAGCTCGTTGTTATGAGGCTTTGAATAAATTGGATTTCGCCT 517
Query 540 TTCGTGATTCTCGCGTTGTTTTGAATATGGAGCCTGAGAATGTTTCTGCTAATGAGATTT 599
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 518 TTCGGGATTCGCGCGTTGTTTTGAATATGGAGCCTGAGAATGTTTCTGCTAATGAGATTT 577
Query 600 TTGAGAGGGTGAAGAAGGTTTTGGTTGGTAAAGGGATTGATGTTGATGAGATGGAGAAGA 659
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 578 TTGAGAGGGTGAAGAAGGTTTTGGTTGGTAAAGGGATTGATGTTGAGGAGATGGAGAAGA 637
Query 660 ATCTGGTTAATGTTCAGCCTGTTGGTGCTGCGAGGTTGAGGAAGATTGTTAAGGAGAGGT 719
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 638 ATTTGGTTAATGTTCAGCCTGTTGGTGCGGCGAGGTTGAGGAAGATTGTTAAGGAGAGGT 697
Query 720 TAAGGAAGAAGAAGAAGAAGTCGATGACGATGACGAATGGTGGAAATGATGGTGAGA-GG 778
| |||||||||||||||||| | ||||| |||||||||||||||||||||||| | ||
Sbjct 698 TGAGGAAGAAGAAGAAGAAGACCATGAC---GACGAATGGTGGAAATGATGGTGA-ACGG 753
Query 779 AAGAGTGTTGAAGCGGTTGTTGAGGATGCCAAGGTTGATAATGGAGAGGAAGTTGATAGC 838
|||||| |||||| |||||||||||||| || ||||| ||||||||||||| ||||||
Sbjct 754 AAGAGTAATGAAGCTGTTGTTGAGGATGCGAAAGTTGAGAATGGAGAGGAAGCGGATAGC 813
Query 839 GGG-AG--GAAAG-G-TAAGGCAA--TTGAAGAGAA-G--AAGCTAGAGGATAAG----- 883
||| || ||||| | |||| || | || || || | | | ||||| |||
Sbjct 814 GGGAAGTCGAAAGAGAAAAGG-AAGCTAGAGGATAAGGTTGTGGTTGAGGAAAAGAAAAT 872
Query 884 G-TTGCTGTTATGGACAAAGAGGTCATTGCTTCAGAGA----T--------TAAGGAAGA 930
| | |||| ||||| |||||||||||||||||||||| | |||||||||
Sbjct 873 GAGTCCTGTCATGGATAAAGAGGTCATTGCTTCAGAGATTGTTGAGAGCGCTAAGGAAGA 932
Query 931 CGCAACAGTGACTAGGACAGTGAAGTTGGTTCATGGAGATGATATACGGTGGGCACAATT 990
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 933 CGCAACAGTGACTAGGACAGTGAAGTTGGTTCATGGAGATGATATACGGTGGGCACAATT 992
Query 991 GCCGTTGGATTCTAGTGTT-GTACTTGTTAGAGATGTGATTAAGGATCGGTTTCCTGCTC 1049
||||||||||||||||||| | |||||| ||||| ||||| | |||||||||||||||||
Sbjct 993 GCCGTTGGATTCTAGTGTTAG-ACTTGTAAGAGACGTGATCAGGGATCGGTTTCCTGCTC 1051
Query 1050 TGAAGGGTTTTCTGATCAAATATAGAGACTCAGAGGGTGATTTGGTTACCATTACTACGA 1109
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1052 TGAAGGGTTTCCTGATCAAATATAGGGACTCAGAGGGTGATTTGGTTACCATTACTACGA 1111
Query 1110 CGGATGAGCTGAGGCTGGCTGCGTCTACGAGGGAGAAACTTGGCTCTTTTAGATTGTATA 1169
| |||||||| ||||||||||| ||||| ||||||||||||||||| |||||||||||||
Sbjct 1112 CAGATGAGCTAAGGCTGGCTGCATCTACTAGGGAGAAACTTGGCTCCTTTAGATTGTATA 1171
Query 1170 TAGCTGAAGTTAGTCCCAATCAAGAACCAACTTATGATGTCATTGATAATGATGAATCAA 1229
||||||||||||| ||||||||||||||||||||||||||||| || |||||||| ||||
Sbjct 1172 TAGCTGAAGTTAGCCCCAATCAAGAACCAACTTATGATGTCATCGAAAATGATGAGTCAA 1231
Query 1230 CTGATAAGTTTGCCAAGGGATCGAGTAGTGTTGCTGATAATGGAAGCGTCGGAGACTTTG 1289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1232 CTGATAAGTTTGCCAAGGGATCGAGTAGTGTTGCTGATAATGGAAGCGTCGGAGACTATG 1291
Query 1290 TGGAATCTGAGAAAGCATCTACCAGCCTTGAGCACTGGATTTTCCAGTTTGCGCAACTGT 1349
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 1292 TGGAATCTGAGAAAGCATCTACCACCCTTGAGCACTGGATTTTCCAGTTTGCGCAATTGT 1351
Query 1350 TTAAGAACCATGTTGGGTTTGATTCTGATTCTTACTTGGAACTTCATAACCTTGGGATGA 1409
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1352 TTAAGAACCATGTCGGGTTTGATTCTGATTCTTACTTGGAACTTCATAACCTTGGGATGA 1411
Query 1410 AACTGTATACAGAAGCAATGGAAGATATTGTCACTGGCGAAGATGCGCAAGAACTCTTTG 1469
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1412 AACTGTATACAGAAGCAATGGAAGATATTGTCACTGGCGAAGATGCGCAACAACTCTTTG 1471
Query 1470 ATATTGCTGCTGATAAGTTTCAAGAAATGGCTGCACTTGCAATGTTTAACTGGGGGAATG 1529
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1472 ATATTGCTGCTGATAAGTTTCAAGAAATGGCTGCGCTTGCAATGTTTAACTGGGGGAATG 1531
Query 1530 TTCATATGTCCAAGGCAAGAAGGCAGATCTATTTTCCCGAGGATGGTTCAAGGGAAACTA 1589
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1532 TTCATATGTCCAAGGCAAGAAGGCAGATCTATTTTCCCGAGGATGGTTCAAGAGAAACTA 1591
Query 1590 TACTAGAGAAAGTTGAGGCCGGATTTGAGTGGGCGAAGAACGAGTACAACAAAGCTGCAG 1649
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1592 TACTAGAGAAAGTTGAGGCCGGATTTGAGTGGGCAAAAAACGAGTACAACAAAGCTGCAG 1651
Query 1650 AAAAGTACGAAGGCGCGGTTAAAATTAAATCTGATTTCTATGAAGCTCTTCTAGCACTAG 1709
|||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 1652 AAAAATACGAAGGGGCGATTAAAATTAAATCTGATTTCTATGAAGCTCTTCTAGCACTCG 1711
Query 1710 GCCAACAACAGTTTGAGCAGGCTAAGCTTTGCTGGTATCATGCATTGAGTGGCGAGGTAG 1769
| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1712 GGCAACAACAGTTTGAACAGGCTAAGCTTTGCTGGTATCATGCATTGAGCGGCGAGGTAG 1771
Query 1770 ATATAGAAAGCGATGCTTCTCAGGATGTTCTAAAGCTCTATAACAAAGCTGAGGAGAGCA 1829
|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1772 ATATAGAAAGCGATATTTCCCAGGATGTTCTAAAGCTCTATAACAAAGCTGAGGAGAGCA 1831
Query 1830 TGGAAAAGGGTATGCAAATATGGGAAGAGATGGAAGAACGCCGTCTAAATGGAATCTCCA 1889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1832 TGGAAAAGGGTATGCAAATATGGGAAGAGATGGAAGAACGCCGTCTAAATGGAATCTCCA 1891
Query 1890 ATTTCGATAAACATAAGGAACTGCTACAGAAGTTAGGCTTGGATGGAATCTTTAGTGAAG 1949
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1892 ATTTCGATAAACATAAAGAACTGCTACAGAAGTTAGGCTTGGATGGAATCTTTAGTGAAG 1951
Query 1950 CGTCTGATGAAGAAAGCGCAGAGCAAACAGCTAATATGAGTTCCCAGATTAATCTTCTGT 2009
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1952 CATCTGATGAAGAAAGCGCAGAGCAAACAGCTAATATGAGTTCCCAGATTAATCTTTTGT 2011
Query 2010 GGGGTTCCTTACTGTATGAACGGTCCATCGTGGAGTATAAACTTGGCCTACCGACATGGG 2069
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 2012 GGGGTTCCTTACTGTATGAACGGTCCATCGTGGAGTATAAGCTTGGCCTACCGACCTGGG 2071
Query 2070 ATGAATGTTTGGAGGTTGCAGTGGAGAAATTTGAACTAGCTGGAGCTTCTGCAACCGATA 2129
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2072 ATGAATGTTTGGAGGTTGCAGTGGAGAAATTTGAACTGGCTGGAGCTTCTGCAACCGATA 2131
Query 2130 TTGCTGTAATGGTAAAGAACCACTGCTCAAGTGACAATGCACTTGAAGGTA 2180
| ||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2132 TAGCTGTCATGGTAAAGAACCATTGCTCAAGTGACAATGCACTTGAAGGTA 2182
> Ahg353623 jgi|Araly1|353623|fgenesh1_pg.C_scaffold_7000796
Length=2361
Score = 1371 bits (742), Expect = 0.0
Identities = 1266/1514 (84%), Gaps = 55/1514 (4%)
Strand=Plus/Plus
Query 860 GAAGAGAAGAAGCTAGAGGATAAGGTTGCTGTTATGGACAAAGAGGTCATTGCTTCAGAG 919
||||||| |||| | ||||||||||| | ||||||||||||||||||||||||||| |||
Sbjct 859 GAAGAGAGGAAGGTGGAGGATAAGGTCGTTGTTATGGACAAAGAGGTCATTGCTTCCGAG 918
Query 920 A---TT-----A--AGGAAG-AC----------GCAACAGTGACTAGGACAGTGAAGTTG 958
| || | |||||| || ||||| || |||||||| || ||||||
Sbjct 919 ATTGTTGAAGGAGGAGGAAGCACAAAAGGAGGGGCAACGGTTACTAGGACTGTCAAGTTG 978
Query 959 GTTCATGGAGATGATATACGGTGGGCACAATTGCCGTTGGATTCTAGTGTT-GTACTTGT 1017
|| ||||||||||||||| ||||||||||||||||| ||||||||| |||| | ||||||
Sbjct 979 GTACATGGAGATGATATAAGGTGGGCACAATTGCCGCTGGATTCTACTGTTAG-ACTTGT 1037
Query 1018 TAGAGATGTGATTAAGGATCGGTTTCCTGCTCTGAA-GGGTTTTCTGATCAAATATAGAG 1076
|||||||| || | |||||||||||||||| | || |||||| || || |||||||| |
Sbjct 1038 AAGAGATGTAATCAGGGATCGGTTTCCTGCT-TTAAGGGGTTTCCTCATTAAATATAGGG 1096
Query 1077 ACT-CAGAGGGTGATTTGGTTACCATTACTACGACGGATGAGCTGAGGCTGGCTGCGTCT 1135
| | |||| ||||| ||||| |||||||| || || |||||||||||||| ||||| |||
Sbjct 1097 A-TACAGAAGGTGACTTGGTAACCATTACCACAACAGATGAGCTGAGGCTAGCTGCTTCT 1155
Query 1136 AC-GAGGGAGAAACTTGGCTCTTTTAGATTGTATATAGCTGAAGTTAGTCCCAATCAAGA 1194
|| | || |||||||| || ||||||| |||||||| ||||||| ||| | |||||
Sbjct 1156 ACTCA-TGATAAACTTGGTTCCCTTAGATTATATATAGCAGAAGTTAACCCCGACCAAGA 1214
Query 1195 ACCAACTTATGATGTCATTGA-TAATGA-TGAATCAACTGATAAGTTTGCCAAGGGATCG 1252
|||||| ||||||| || ||| ||| | |||||||||||| ||| |||||||| ||| |
Sbjct 1215 ACCAACCTATGATGGCA-TGAGCAAT-ACTGAATCAACTGACAAGGTTGCCAAGAGATTG 1272
Query 1253 AGTAGTGTTGCTGATAATGGAAGCGTCGGAGACT-TTGTGGAATCTGAGAAAGCATCTAC 1311
|| || |||| || |||||||| |||||||| | | |||||||||| ||||||||| |
Sbjct 1273 AGCAGCCTTGCGGACAATGGAAGTGTCGGAGAATACT-TGGAATCTGACAAAGCATCTGC 1331
Query 1312 CAGCCTTGAGCACTGGATTTTCCAGTTTGCGCAACTGTTTAAGAACCATGTTGGGTTTGA 1371
|| |||| ||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 1332 GTGCTTTGAAAACTGGATTTTCCAGTTTGCGCAATTGTTCAAGAACCATGTTGGGTTTGA 1391
Query 1372 TTCTGATTCTTACTTGGAACTTCATAACCTTGGGATGAAACTGTATACAGAAGCAATGGA 1431
|||||| || |||||||| |||||| ||||||||||||| || ||||| |||||||||||
Sbjct 1392 TTCTGACTCGTACTTGGACCTTCATGACCTTGGGATGAAGCTATATACGGAAGCAATGGA 1451
Query 1432 AGATATTGTCACTGGCGAAGATGCGCAAGAACTCTTTGATATTGCTGCTGATAAGTTTCA 1491
||| ||||||||| ||||||||||| ||||||||||| || |||||||||||||| ||
Sbjct 1452 GGATGCTGTCACTGGTGAAGATGCGCAGGAACTCTTTGAAATCGCTGCTGATAAGTTCCA 1511
Query 1492 AGAAATGGCTGCACTTGCAATGTTTAACTGGGGGAATGTTCATATGTCCAAGGCAA-GAA 1550
|||||||| |||||| || ||||||||||||| || ||||| ||||||||||||| |||
Sbjct 1512 AGAAATGGGTGCACTAGCTTTGTTTAACTGGGGTAACGTTCACATGTCCAAGGCAAGGAA 1571
Query 1551 GGCAGATCTATTTTCCCGAGGATGGTTCAAGGGAAACTATACTAG-AGAAAGTTGAGGCC 1609
|||| ||| ||| |||||||||| || || ||||||||| ||| || |||||||||
Sbjct 1572 -GCAGGTCTGTTTACCCGAGGATGCCTCGAGAGAAACTATAATAGAAG-CAGTTGAGGCT 1629
Query 1610 GGATTTGAGTGGGCGA-AGAACGAGTACAACAAAGCTGCAGA-AAAGTACGAAGGCGCGG 1667
| ||||| |||| | | |||||||||||||||||||||||| ||| || |||| |||
Sbjct 1630 GCATTTGTGTGGAC-ATGGAACGAGTACAACAAAGCTGCAGAGAAA-TATGAAGAAGCGA 1687
Query 1668 TTAAAATTAAATCTGATTTCTATGAAGCTCTTCTAGCACTAGGCCAACAACAGTTTGAGC 1727
|||| ||||| ||||||| || ||||||||||||||||| || ||| | |||||||| |
Sbjct 1688 TTAAGGTTAAACCTGATTTTTACGAAGCTCTTCTAGCACTTGGGCAAGAGCAGTTTGAAC 1747
Query 1728 AGGCTAAGCTTTGCTGGTATCATGCATTGAGTGGCGAGGTAGATATAGAAAGCGATGCTT 1787
|||| ||||||||||||||||||||| | | || ||||||| ||||||| || | ||
Sbjct 1748 AGGCAAAGCTTTGCTGGTATCATGCACTCAAAAGCAAGGTAGACCTAGAAAGTGAGGTTT 1807
Query 1788 CTCAGGATGTTCTAAAGCTCTATAACAAAGCTGAGGAGAGCATGGAAAAGGGTATGCAAA 1847
| || || || || |||||||||||||||||||| || || ||||| | ||||||||| |
Sbjct 1808 CCCAAGAGGTCCTGAAGCTCTATAACAAAGCTGAAGATAGTATGGAGAGGGGTATGCAGA 1867
Query 1848 TATGGGAAGAGATGGAAGAACGCCGTCTAAATGGAATCTCCAATTTCGATAAACATAAGG 1907
| |||||||||||||||||| | |||||||||||||||||||| || |||||||||||
Sbjct 1868 TCTGGGAAGAGATGGAAGAATGTCGTCTAAATGGAATCTCCAAGTTAGATAAACATAA-A 1926
Query 1908 AAC-TGCTACAGAAGTTAGG-CTTGGATGGAA-TCTTTAGTGAAGCGTCTGATGAAGAAA 1964
||| || | | |||||| || |||||| ||| | ||||| ||||| || || |||||||
Sbjct 1927 AACATGTTGCGGAAGTT-GGAGTTGGAT-GAATTGTTTAGCGAAGCTTCAGAAGAAGAAA 1984
Query 1965 GC-GCAGAGCAAACAGCTAATATGAGTTCCCAGATTAATCTTC-TGTGGGGTTCCTTACT 2022
| | ||||||||||||||||||||||| |||||||| | || |||||||||| || |
Sbjct 1985 -CTGTGGAGCAAACAGCTAATATGAGTTCTCAGATTAA-CCTCTTGTGGGGTTCGTTGTT 2042
Query 2023 GTATGAACGGTCCATCGTGGAGTATAAACTTGGCCTACCGACATGGGATGAATGTTTGGA 2082
||||||||||| || |||||||| || || || ||||| ||||||||||||||||| ||
Sbjct 2043 ATATGAACGGTCTATTGTGGAGTACAAGCTCGGGCTACCAACATGGGATGAATGTTTAGA 2102
Query 2083 GGTTGCAGTGGAGAAATTTGAACTAGCTGGAGCTTCTGCAACCGATATTGCTGTAATGGT 2142
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct 2103 GGTTGCAGTGGAGAAATTTGAACTAGCTGGAGCTTCTGCAACTGATATAGCTGTGATGGT 2162
Query 2143 AAAGAACCACTGCTCAAGTGACAATGCACTTGAAGGTATGGGATTCAAGATCGATGAGAT 2202
|||||| || || ||||| || | ||||||||||||||||||||||||||| ||||| ||
Sbjct 2163 AAAGAATCATTGTTCAAGCGAGAGTGCACTTGAAGGTATGGGATTCAAGATTGATGAAAT 2222
Query 2203 AGTACAGGCATGGAATGAGATGTATGATGCCAAAAGATGGCAGATTGGTGTCCCATCTTT 2262
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 2223 AGTACAGGCATGGAATGAGATGTATGATGCCAAGAGATGGCAGATGGGTGTCCCATCTTT 2282
Query 2263 CCGGCTAGAACCTTTGTTCCGAAGACG-GTCACCGAAACTTCATGATATTTTGGAGAATG 2321
|||||||||||| ||||||| ||||| | | || ||||| |||||||| || |||||||
Sbjct 2283 CCGGCTAGAACCGATGTTCCGCAGACGAGCC-CCAAAACTGCATGATATCTTAGAGAATG 2341
Query 2322 TGTTTTCAGGGCCT 2335
| ||||||||||||
Sbjct 2342 TATTTTCAGGGCCT 2355
> Ahg899960 jgi|Araly1|899960|Al_scaffold_0004_610
Length=222
Score = 268 bits (145), Expect = 1e-70
Identities = 159/166 (96%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 2176 AGGTATGGGATTCAAGATCGATGAGATAGTACAGGCATGGAATGAGATGTATGATGCCAA 2235
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 57 AGGTATGGGATTCAAGATCGATGAGATAGTACAGGCATGGAATGAAATGTATGATGCCAA 116
Query 2236 AAGATGGCAGATTGGTGTCCCATCTTTCCGGCTAGAACCTTTGTTCCGAAGACGGTCACC 2295
|||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 117 AAGATGGCAGATCGGTGTCCCATCGTTCCGGCTAGAACCTTTGTTCCGGAGACGGTCACC 176
Query 2296 GAAACTTCATGATATTTTGGAGAATGTGTTTTCAGGGCCTCAGTGA 2341
||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 177 AAAACTTCATGATATTTTAGAAAATGTGTTTTCAGGGCCTCAGTGA 222
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103491195665
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5