BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G25295.1 Length=240 Score E Sequences producing significant alignments: (Bits) Value Ahg320330 jgi|Araly1|320330|fgenesh1_pm.C_scaffold_4000387 300 3e-81 > Ahg320330 jgi|Araly1|320330|fgenesh1_pm.C_scaffold_4000387 Length=240 Score = 300 bits (162), Expect = 3e-81 Identities = 204/224 (91%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 1 ATGGATGTTCAAAGATCTTCATACATTTTCATTGCACTTTCTATCATTGCAATGTTCTTG 60 |||||||||| ||||||| ||||||||||||||||| ||||| ||||||||||||||||| Sbjct 1 ATGGATGTTCGAAGATCTCCATACATTTTCATTGCAGTTTCTTTCATTGCAATGTTCTTG 60 Query 61 ATCACAGGAGTAA-AAC-CAG-AGGTAAGAGATATTTGTCCAGGAGTGTGCCATGCTGGA 117 | ||||||||||| | | ||| ||||||||||||||| ||||| || |||||||||||| Sbjct 61 ACCACAGGAGTAAGATCACAGCCGGTAAGAGATATTTGCCCAGGGGTATGCCATGCTGGA 120 Query 118 ATTGAACCAGACTGTGACACACTCTGCATTAGCATGGGGTTTACTGGGGGTTATTGTCAA 177 |||||||||||||| ||||||||||||| |||| | || |||||||| || ||||||||| Sbjct 121 ATTGAACCAGACTGCGACACACTCTGCACTAGCTTAGGCTTTACTGGAGGCTATTGTCAA 180 Query 178 GGATTAACATGTTGTTGCAACCCAAAATCCTCCAAATCCTCAAT 221 |||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 GGATTAACATGTTGTTGCAACCCAAAATCCTCCAAATCCTCAAT 224 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 8286852637 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5