BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G25295.1

Length=240
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg320330 jgi|Araly1|320330|fgenesh1_pm.C_scaffold_4000387           300    3e-81


> Ahg320330 jgi|Araly1|320330|fgenesh1_pm.C_scaffold_4000387
Length=240

 Score =  300 bits (162),  Expect = 3e-81
 Identities = 204/224 (91%), Gaps = 3/224 (1%)
 Strand=Plus/Plus

Query  1    ATGGATGTTCAAAGATCTTCATACATTTTCATTGCACTTTCTATCATTGCAATGTTCTTG  60
            |||||||||| ||||||| ||||||||||||||||| ||||| |||||||||||||||||
Sbjct  1    ATGGATGTTCGAAGATCTCCATACATTTTCATTGCAGTTTCTTTCATTGCAATGTTCTTG  60

Query  61   ATCACAGGAGTAA-AAC-CAG-AGGTAAGAGATATTTGTCCAGGAGTGTGCCATGCTGGA  117
            | ||||||||||| | | |||  ||||||||||||||| ||||| || ||||||||||||
Sbjct  61   ACCACAGGAGTAAGATCACAGCCGGTAAGAGATATTTGCCCAGGGGTATGCCATGCTGGA  120

Query  118  ATTGAACCAGACTGTGACACACTCTGCATTAGCATGGGGTTTACTGGGGGTTATTGTCAA  177
            |||||||||||||| ||||||||||||| |||| | || |||||||| || |||||||||
Sbjct  121  ATTGAACCAGACTGCGACACACTCTGCACTAGCTTAGGCTTTACTGGAGGCTATTGTCAA  180

Query  178  GGATTAACATGTTGTTGCAACCCAAAATCCTCCAAATCCTCAAT  221
            ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  GGATTAACATGTTGTTGCAACCCAAAATCCTCCAAATCCTCAAT  224



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8286852637


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5