BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25300.1
Length=1407
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932673 jgi|Araly1|932673|scaffold_400661.1 1690 0.0
Ahg491522 jgi|Araly1|491522|fgenesh2_kg.7__955__AT4G32120.1 1085 0.0
Ahg899935 jgi|Araly1|899935|Al_scaffold_0004_585 219 6e-56
> Ahg932673 jgi|Araly1|932673|scaffold_400661.1
Length=1082
Score = 1690 bits (915), Expect = 0.0
Identities = 1010/1056 (96%), Gaps = 6/1056 (1%)
Strand=Plus/Plus
Query 127 TCGTGGATTGAGATGGAGAGCTTACCCACGACGGTTCCCTCCAAATCAGAACGACGAGCT 186
||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||
Sbjct 10 TCGTGGATTGAGATGGAGACCTTACCCACGACGGTTCCGTCAAAATCAGAACGACGAGCT 69
Query 187 CGTTCCTCCAAGTTTTCTCAGAGTTCCTCTAAGCCTTCGGTTATAATGGCTTTCTTCTCT 246
|| |||||||||| ||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 70 CGGTCCTCCAAGTCTTCTCAGAGTTCCTCTAAGCCCTCAGTTATAATGGCTTTCTTCTCT 129
Query 247 TGCGTCGCTTGGCTCTACGTCGCTGG-CAGGTTATGGCAAGATGCAGAGAATAGAGTGGT 305
||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||
Sbjct 130 TGCGTCGCTTGGCTCTATGTCGCTGGTC-GGTTATGGCAAGATGCAGAGAATAGAGTGGT 188
Query 306 ACTCAATAATATACTTAAGAAGAGTTATGATCAGAAGCCTAAGGTTCTTACGGTGGATGA 365
|||||||||||| ||||||||||||||| |||||||| |||||||||||||||| ||||
Sbjct 189 ACTCAATAATATTCTTAAGAAGAGTTATCATCAGAAGACTAAGGTTCTTACGGTTAATGA 248
Query 366 CAAGCTT-ATGGTCCTAGGATGCAAAGATCTTGAGAGGAGAATTGTTGAAACTGAAATGG 424
|||| || || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 249 CAAG-TTGATCGTCCTAGGATGCAAAGATCTTGAGAGGAGAATTGTTGAAACTGAAATGG 307
Query 425 AGTTGACTCTGGCTAAGAGTCAAGGCTATCTTAAGAACTTA-AAAAGTGGTTCGTCTTCA 483
|||||||||| || ||||||||||||||||| || ||| | || |||||||| ||||||
Sbjct 308 AGTTGACTCTTGCAAAGAGTCAAGGCTATCTGAAAAAC-CAGAAGAGTGGTTCTTCTTCA 366
Query 484 GGGAAGAAATTACTTGCTGTGATTGGAGTGTATTCAGGCTTTGGTAGTCATCTGAGGCGT 543
||||||||||| ||||||||||||||||| ||| |||| ||||| |||||| ||||||||
Sbjct 367 GGGAAGAAATTGCTTGCTGTGATTGGAGTTTATACAGGTTTTGGAAGTCATTTGAGGCGT 426
Query 544 AATACATTTCGAGGGTCTTATATGCCACAAGGTGATGCTTTGAGGAAACTTGAGGAAAGA 603
||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 427 AATACATTTAGAGGGACTTGGATGCCACAAGGTGATGCTTTGAGGAAACTTGAGGAAAGA 486
Query 604 GGAATTGTCATACGTTTTGTGATTGGTCGAAGTCCAAATCGAGGTGATAGCTTAGATCGA 663
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 487 GGAATTGTCATACGTTTTGTGATTGGTCGAAGTCCAAATCGGGGTGATAGCTTAGATCGA 546
Query 664 AAAATCGACGAGGAAAATCAAGCAAGAAAAGATTTTTTGATTCTTGAGAATCATGAGGAG 723
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 547 AAAATCGACGAGGAAAATCAAGCAAGAAAAGATTTTTTGATTCTTGAGAATCACGAGGAG 606
Query 724 GCCCAAGAAGAGCTAGCCAAGAAAGTGAAGTTCTTCTTTAGTGCTGCTGTTCAAAACTGG 783
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 GCCCAAGAAGAGCTACCCAAGAAAGTGAAGTTCTTCTTTAGTGCTGCTGTTCAAAACTGG 666
Query 784 GATGCAGAGTTTTACATCAAAGTTGATGACAATATTGACTTAGATCTTGAGGGGTTGATT 843
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 667 GATGCACAGTTTTACATCAAAGTTGATGACAATATTGACCTAGATCTTGAGGGGTTGATT 726
Query 844 GGCCTTCTTGAAAGTCGGCGTGGTCAAGATGCTGCTTACATTGGGTGTATGAAGTCTGGT 903
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 727 GGCCTTCTTGAAAGCCGGCGTGGTCAAGATGCTGCTTACATTGGGTGTATGAAGTCTGGT 786
Query 904 GAAGTGGTTGCTGAAGAGGGAGGGAAATGGTATGAGCCAGAATGGTGGAAATTTGGGGAC 963
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 787 GAAGTGGTTGCTGAAGAGGGAGGGCAATGGTATGAGCCAGAATGGTGGAAATTTGGGGAC 846
Query 964 GAAAAATCGTACTTCCGTCATGCAGCTGGTTCGCTGTTAATACTATCCAAAACTTTGGCT 1023
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 847 GAAAAATCGTACTTCCGTCATGCAGCTGGTTCGCTGTTAATACTATCCAAAAATTTGGCT 906
Query 1024 CAGTATGTAAACATAAACAGTGGATCATTGAAGACATATGCATTTGATGATACCTCTATA 1083
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 CAGTATGTAAACATAAACAGTGGATCATTGAAGACATATGCATTTGATGATACCTCTATA 966
Query 1084 GGATCTTGGATGATTGGTGTTCAGGCAACTTATATAGACGACAATCGCCTTTGCTGCAGC 1143
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 967 GGATCTTGGATGATTGGTGTTCAGGCAACTTATATTGACGACAATCGCCTTTGCTGCAGC 1026
Query 1144 AGCATCAGACAAGACAAGGTGTGTTCTGTGGCTTGA 1179
||||||||||||||||||||||||||||||||||||
Sbjct 1027 AGCATCAGACAAGACAAGGTGTGTTCTGTGGCTTGA 1062
> Ahg491522 jgi|Araly1|491522|fgenesh2_kg.7__955__AT4G32120.1
Length=1548
Score = 1085 bits (587), Expect = 0.0
Identities = 910/1066 (85%), Gaps = 21/1066 (2%)
Strand=Plus/Plus
Query 131 GGATTGAGATGGAGAGCTTACCCACGACGGTTC-CCTCCAAATCAGAACGACGAGCTCGT 189
|||||||||||||||||||||| ||||||| || | | |||||||| || |||| | |
Sbjct 125 GGATTGAGATGGAGAGCTTACCAACGACGG-TCTCAGCGAAATCAGACCGGCGAGGTAG- 182
Query 190 TCC-TCCAAGTTTTCTCAGAGTTCCTCTAAGCCTTCGGTTATAATGGCTTTCTTCTCTTG 248
|| |||||| ||||||| |||| ||||| || |||| |||| |||||||| ||
Sbjct 183 GCCTTCCAAG---TCTCAGAACACCTCCAAGCCCTCTCTTATCTTGGCCTTCTTCTCCTG 239
Query 249 -CGTCGCTTGGCTCTACGTCGCTGGCAGGTTATGGCAAGATGCAGAGAATAGAGTGGTAC 307
| | ||||||||||||||||||||| |||| |||||||||||| || | |||| | ||
Sbjct 240 TC-TGGCTTGGCTCTACGTCGCTGGCCGGTTGTGGCAAGATGCACAGTACAGAGCAGCAC 298
Query 308 TCAATAATATACTTAAGAAGAGTTATGATCAGAAGCCTAAGGTTCTTACGGTGGATGACA 367
|||||| | | |||||||||| ||||||||||| ||||||||||||||||||||| ||||
Sbjct 299 TCAATACTGTGCTTAAGAAGAATTATGATCAGAGGCCTAAGGTTCTTACGGTGGAGGACA 358
Query 368 AGCTTATGGTCCTAGGATGCAAAGATCTTGAGAGGAGAATTGTTGAAACTGAAATGGAGT 427
|||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 AGCTGGTAGTCCTTGGATGCAAAGATCTTGAGAGGAGAATTGTTGAAACTGAAATGGAGT 418
Query 428 TGACTCTGGCTAAGAGTCAAGGCTATCTTAAGAACTTA-AAAAGTGGT-TCGTCTTCAGG 485
|| | | ||| |||||||||||||||||||| ||| | ||||||| | || || |||||
Sbjct 419 TGGCACAGGCAAAGAGTCAAGGCTATCTTAAAAACC-AGAAAAGTG-TCTCTTCCTCAGG 476
Query 486 GAAGAAATTACTTGCTGTGATTGGAGTGTATTCAGGCTTTGGTAGTCATCTGAGGCGTAA 545
||||||| | |||||||| |||||||| || |||| ||||| |||||| ||| ||| ||
Sbjct 477 GAAGAAAATGCTTGCTGTTATTGGAGTTTACACAGGTTTTGGAAGTCATTTGAAGCGCAA 536
Query 546 TACATTTCGAGGGTCTTATATGCCACAAGGTGATGCTTTGAGGAAACTTGAGGAAAGAGG 605
|| |||| |||| |||| ||||||| || ||||||||||| |||||||||||||||||
Sbjct 537 TAAATTTAGAGGCTCTTGGATGCCACGAGATGATGCTTTGAAAAAACTTGAGGAAAGAGG 596
Query 606 AATTGTCATACGTTTTGTGATTGGTCGAAGTCCAAATCGAGGTGATAGCTTAGATCGAAA 665
| |||||||||| |||||||||||||| ||| | || |||||||||||| ||||| | ||
Sbjct 597 AGTTGTCATACGCTTTGTGATTGGTCGGAGTGCTAACCGAGGTGATAGCCTAGATAGGAA 656
Query 666 AATCGACGAGGAAAATCAAGCAAGAAAAGATTTTTTGATTCTTGAGAATCATGAGGAGGC 725
||| ||||| ||||||| |||| ||||| |||||||||||||||||||| ||||| ||
Sbjct 657 AATTGACGAAGAAAATCGTGCAACTAAAGACTTTTTGATTCTTGAGAATCACGAGGAAGC 716
Query 726 CCAAGAAGAGCTAGCCAA-GAAAGTGAAGTTCTTCTTTAGTGCTGCTGTTCAAAACTGGG 784
|||||||||| || |||| ||||||||||||||||| |||||||||||||| || ||||
Sbjct 717 CCAAGAAGAGTTA-CCAAAGAAAGTGAAGTTCTTCTACAGTGCTGCTGTTCAGAATTGGG 775
Query 785 ATGCAGAGTTTTACATCAAAGTTGATGACAATATTGACTTAGATCTTGAGGGGTTGATTG 844
||||||||||||| |||||||||||||||| ||||| |||||||||||||| ||||||
Sbjct 776 ATGCAGAGTTTTATGTCAAAGTTGATGACAACGTTGACCTAGATCTTGAGGGGATGATTG 835
Query 845 GCCTTCTTGAAAGTCGGCGTGGTCAAGATGCTGCTTACATTGGGTGTATGAAGTCTGGTG 904
| ||||||||||| || ||||||||||||| ||||||||||||||| ||||| ||||| |
Sbjct 836 GGCTTCTTGAAAGCCGTCGTGGTCAAGATGGTGCTTACATTGGGTGCATGAAATCTGGAG 895
Query 905 AAGTGGTTGCTGAAGAGGGAGGGAAATGGTATGAGCCAGAATGGTGGAAATTTGGGGACG 964
| ||| || ||||||||||| | ||||||||||||| || |||||||||||||||||||
Sbjct 896 ATGTGATTACTGAAGAGGGAAGTCAATGGTATGAGCCTGAGTGGTGGAAATTTGGGGACG 955
Query 965 AAAAATCGTACTTCCGTCATGC-AGCTGGTTCGCTGTTAATACTATCCAA-AACTTTGGC 1022
| |||||||| ||||||||||| | ||||||||||| ||||||| ||||| || | ||||
Sbjct 956 ACAAATCGTATTTCCGTCATGCTA-CTGGTTCGCTGGTAATACTCTCCAAGAA-TCTGGC 1013
Query 1023 TCAGTATGTAAACATAAACAGTGGATCATTGAAGACATATGCATTTGATGATACCTCTAT 1082
||||||||| || ||||||||||||| |||||||||||||| |||||||||||| | ||
Sbjct 1014 TCAGTATGTCAATATAAACAGTGGATTGTTGAAGACATATGCGTTTGATGATACCACCAT 1073
Query 1083 AGGATCTTGGATGATTGGTGTTCAGGCAACTTATATAGACGACAATCGCCTTTGCTGCAG 1142
||||| ||||||||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct 1074 TGGATCATGGATGATTGGCGTCCAGGCAACATATATAGACGACAATCGCCTTTGCTGCAG 1133
Query 1143 CAGCATCA-GACAAGACAAGGTGTGTTCTGTGGCTTGAGCAAAGCA 1187
||||| || ||||||| || |||||||| |||| ||| ||| |||
Sbjct 1134 CAGCA-CAAGACAAGAAAAAGTGTGTTCCATGGCATGATCAATGCA 1178
> Ahg899935 jgi|Araly1|899935|Al_scaffold_0004_585
Length=324
Score = 219 bits (118), Expect = 6e-56
Identities = 254/318 (80%), Gaps = 16/318 (5%)
Strand=Plus/Plus
Query 139 ATGGAGAGCTTACCCACGACGGTTCCCT-CCAAATCAGAACGACGAGCTCGTTCC-TCCA 196
|||||||||||||| ||||||| || || | |||||||| || |||| | | || || |
Sbjct 1 ATGGAGAGCTTACCAACGACGG-TCTCTGCTAAATCAGACCGGCGAGGTAG-GCCTTCTA 58
Query 197 AGTTTTCTCAGAGTTCCTCTAAGCCTTCGGTTATAATGGCTTTCTTCTCTTG-CGTCGCT 255
|| ||||||| |||| ||||| || |||| | || |||||||| || | | |||
Sbjct 59 AG---TCTCAGAACACCTCCAAGCCCTCTCTTATCTTAGCCTTCTTCTCCTGTC-TAGCT 114
Query 256 TGGCTCTACGTCGC-TGGC---AGGTTATGGCAAGATGCAGAGAATAGAGTGGTACTCAA 311
||||||| | ||| | | ||||| |||||||||||| || | |||| | ||||||
Sbjct 115 TGGCTCT-GGCCGCTTACCTTTAGGTTGTGGCAAGATGCACAGTACAGAGCAGCACTCAA 173
Query 312 TAATATACTTAAGAAGAGTTATGATCAGAAGCCTAAGGTTCTTACGGTGGATGACAAGCT 371
|| | | |||||||||| ||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 174 TACTGTGCTTAAGAAGAATTATGATCAGAGGCCTAAGGTTCTTACGGTGGAGGACAAGCT 233
Query 372 TATGGTCCTAGGATGCAAAGATCTTGAGAGGAGAATTGTTGAAACTGAAATGGAGTTGAC 431
| | ||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 234 GCTAGCCCTTGGATGCAAAGATCTTGAGAGGAGAATTGTTGAAACTGGAATGGAGTTGGC 293
Query 432 TC-TGGCTAAGAGTCAAG 448
| || | ||||||||||
Sbjct 294 ACATG-CAAAGAGTCAAG 310
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52602628345
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5