BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25305.1
Length=252
Score E
Sequences producing significant alignments: (Bits) Value
Ahg899966 jgi|Araly1|899966|Al_scaffold_0004_616 394 2e-109
> Ahg899966 jgi|Araly1|899966|Al_scaffold_0004_616
Length=252
Score = 394 bits (213), Expect = 2e-109
Identities = 240/253 (95%), Gaps = 2/253 (1%)
Strand=Plus/Plus
Query 1 ATGGGTTCCTCCAAATTGATGGTTACATGCATTGTCGTTGCTATGCTGACCATTTCGTGT 60
||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||| |||
Sbjct 1 ATGGGTTCCTCCAAATTGATGGTTACATGCATTGTTGTTGCTATTCTGGCCATTTCATGT 60
Query 61 GACATTCTCTCTGTTGAAATGGGAATTAGCGTACAAGCTTTACCTCCGACTTGTGGACCA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GACATTCTCTCTGTTGAAATGGGAATTAGCGTACAAGCTTTACCTCCGACTTGTGGACCA 120
Query 121 GATTGTACTGGAAGATTCATGAATCAAGACTGCTCTAAATATTGTGCAGCTTTATCTTAT 180
||||||||||||| |||| |||| |||||||||| |||||||||||||| ||||||||||
Sbjct 121 GATTGTACTGGAACATTCTTGAAACAAGACTGCTATAAATATTGTGCAGGTTTATCTTAT 180
Query 181 AAACATGGTGTTTGCATTCTATTCCGAGGACTTCCTCCAAGAACTTCTACAT-TACGTTG 239
|||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||
Sbjct 181 AAACATGGTGTTTGCATTCTATTCAAAGGACTTCCTCCAAGAACTTCTACATAT-CGTTG 239
Query 240 TTGTTGTGGGTAA 252
|||||||||||||
Sbjct 240 TTGTTGTGGGTAA 252
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8745111769
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5