BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25310.1
Length=1071
Score E
Sequences producing significant alignments: (Bits) Value
Ahg899968 jgi|Araly1|899968|Al_scaffold_0004_618 1027 0.0
Ahg944752 jgi|Araly1|944752|scaffold_700981.1 573 9e-163
> Ahg899968 jgi|Araly1|899968|Al_scaffold_0004_618
Length=636
Score = 1027 bits (556), Expect = 0.0
Identities = 606/631 (96%), Gaps = 0/631 (0%)
Strand=Plus/Plus
Query 106 GACGATGACGTCGATCATCAGATCCAGTCCTACTCTCGCTTTCATCGTCTTACAGATTTG 165
||||| |||| ||||||||||||||| ||||| ||||||||||||| |||| ||||| ||
Sbjct 6 GACGACGACGCCGATCATCAGATCCACTCCTATTCTCGCTTTCATCTTCTTGCAGATCTG 65
Query 166 CTTCATCTTCTTTGCTTCCACTTTCCCTTGCTCTTCTGGGTCTGAGGATAGTTACACCAT 225
||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 66 CTTCATCTTCTTTACTTCCACCCTCCCATGCTCTTCTGGGTCTGAGGATAGTTACACCAT 125
Query 226 TACTGGTAGAGTCAAGATTCCACCAAGCAACGTGATTGGTCACATAGCAAAGTTCTCAAA 285
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 126 TACTGGTAGAGTCAAGATTCCACCAAGCAATGTGATTGGTCACATAGCAAAGTTCTCTAA 185
Query 286 TGTCAAAGTTATACTCAATGGTGGACAGAAGATTACGTTTCTCAGGCCTGATGGATACTT 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 186 TGTCAAAGTTATACTCAATGGTGGACAGAAGATTACGTTTCTCAGGCCTGATGGATACTT 245
Query 346 TACTTTTCATGAAGTGCCTGCTGGGACTCATTTGATTGAAGTATCAGCAATGGGTTACTT 405
||||||||| |||||||||||||| |||||||||||||||||||| |||||||| |||||
Sbjct 246 TACTTTTCACGAAGTGCCTGCTGGAACTCATTTGATTGAAGTATCTGCAATGGGCTACTT 305
Query 406 CTTTTCTCCGGTACGAGTAGATGTTAGTGCTCGGCATCGTGGCAAGGTTCAAGCAACACT 465
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 CTTTTCTCCGGTACGAATAGATGTTAGTGCTCGGCATCGTGGCAAGGTTCAAGCAACACT 365
Query 466 AACAGAAACCAGGAGGAGTCTTACTGAGCTGGTTTTGGAGCCATTGAAGGAAGAGCAATA 525
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 366 AACAGAAACCAGGAGGAGTCTTACTGAGCTGGTTTTGGAGCCATTGAGGGAAGAGCAATA 425
Query 526 TTATGAGATTCGAGAGCCTTTCAACATTATGTCGATCGTGAAAAGTCCAATGGGTCTCAT 585
|||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 426 CTATGAGATCCGAGAGCCTTTCAACATTTTGTCGATCGTGAAAAGTCCGATGGGTCTCAT 485
Query 586 GGTGGGATTCATGGTCGTTGTTGTGTTCCTAATGCCCAAATTAATGGAAAACATAGATCC 645
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 486 GGTGGGATTCATGGTTGTTGTTGTGTTCCTAATGCCCAAATTAATGGAAAACATAGATCC 545
Query 646 AGAGGAGATGAAGCAAGCACAAGAGGAAATGAGGAGACAAGGCGTGCCTTCGCTCACAAG 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 546 AGAGGAGATGAAGCAAGCACAAGAGGAAATGAGGAGACAAGGCGTGCCTTCGCTCACGAG 605
Query 706 CTTGTTACCAGGCGCTGGGGCTAGCCGCTAA 736
|||||||||||||||||||||||||||||||
Sbjct 606 CTTGTTACCAGGCGCTGGGGCTAGCCGCTAA 636
> Ahg944752 jgi|Araly1|944752|scaffold_700981.1
Length=668
Score = 573 bits (310), Expect = 9e-163
Identities = 530/631 (84%), Gaps = 35/631 (6%)
Strand=Plus/Plus
Query 106 GACGATGACGTCGA-TCATCAGATCCA-GT-CCTACTCTCGCTTTCATCGTCTTACAGAT 162
||| ||| || ||| || ||||||||| | ||| | ||||||| ||||||| |||||
Sbjct 18 GACCATGGCGCCGATTC-TCAGATCCACTTCCCT--TGTCGCTTTGATCGTCTGCCAGAT 74
Query 163 TTGCT-TCATCTTC---TTTGCTTCCACT-TTCC-CT-TGC-TCT---TCTGGGTCTGAG 211
|| || |||||||| |||||||||||| |||| | | | ||| |||| |||||||
Sbjct 75 TT-CTCTCATCTTCTTATTTGCTTCCACTCTTCCGATCT-CATCTGGGTCTGAGTCTGAG 132
Query 212 GATAGTTACACCATTACTGGTAGAGTCAA-GATTCCACCAAGCAACGTGATTGGTCACAT 270
||||||||||| || || |||||||| || ||| ||| |||||| ||||||||||||
Sbjct 133 GATAGTTACACAATCACGGGTAGAGT-AAGGATCCCAGCAAGCACCGTGATTGGTCATGC 191
Query 271 AGC-AAAGTTCTCAAATGTCAAAGTTATACTCAATGGTGGACAG-AAGATTACGTTT-CT 327
||| ||| ||||||||| |||||||||||||||||||||| ||| | | |||| ||| ||
Sbjct 192 AGCTAAA-TTCTCAAATATCAAAGTTATACTCAATGGTGGGCAGCATG-TTAC-TTTCCT 248
Query 328 CAGGCCTGATGGATACTTTACTTTTCATGAAGTGCCTGCTGGGACTCATTTGATTGAAGT 387
|||||| |||||||||||||| || || ||||||| |||||||||||| ||||||||||
Sbjct 249 CAGGCCGGATGGATACTTTACCTTCCACAAAGTGCCAGCTGGGACTCATCTGATTGAAGT 308
Query 388 ATCA-GCAATGGGTTACTTCTTTTCTCCGGTACGAGTAGATGTTAGTGCTCGGCATCGTG 446
| | |||||||| |||||||| || || || ||||| ||||||||||||||||||||||
Sbjct 309 -TTATGCAATGGGCTACTTCTTCTCCCCAGTGCGAGTTGATGTTAGTGCTCGGCATCGTG 367
Query 447 GCAAGGTTCAAGCAACACTAACAGAAACCAGGAGGAGTCTTACTGAGCTGGTTTTGGAGC 506
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 368 GAAAGGTTCAAGCAACACTAACAGAAACCAGGAGGAGTCTTACTGAGCTGGTCTTGGAGC 427
Query 507 CATTGAAGGAAGAGCAATATTATGAGATTCGAGAGCCTTTCAACAT-TA-TGTCGATCGT 564
|| || || ||||||||| || ||||| ||||| |||||| | | || |||| || |
Sbjct 428 CACTGCGGGCAGAGCAATACTACGAGATGCGAGAACCTTTCT-C-TGTAATGTCAATTTT 485
Query 565 GAAAAGTCCAATGGGTCTCATGGTGGGATTCATGGTCGTTGTTGTGTTCCTAATGCCCAA 624
|||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||| ||
Sbjct 486 GAAAAGTCCAATGGGTCTTATGGTGGGATTCATGGTCGTTGTCGTGTTCTTAATGCCTAA 545
Query 625 ATTAATGGAAAACATAGATCCAGAGGAGATGAAGCAA-GCACAAGAGGAAATGAGGAGAC 683
|| ||||||||||||||||||||||| |||||| | ||||||||| | ||||| || |
Sbjct 546 GTTGATGGAAAACATAGATCCAGAGGAAATGAAG-AGCGCACAAGAGCAGATGAGAAGCC 604
Query 684 AAGGCGTGCCTTCGCTCACAAGCTTGTTACC 714
|||| |||||||| ||||| |||||| ||||
Sbjct 605 AAGGAGTGCCTTCACTCACTAGCTTGCTACC 635
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39876571182
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5