BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25320.1
Length=5122
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481390 jgi|Araly1|481390|fgenesh2_kg.4__450__AT2G25330.1 2929 0.0
> Ahg481390 jgi|Araly1|481390|fgenesh2_kg.4__450__AT2G25330.1
Length=2487
Score = 2929 bits (1586), Expect = 0.0
Identities = 2164/2429 (89%), Gaps = 96/2429 (4%)
Strand=Plus/Plus
Query 151 AGAGATGGAAGCGGAGGTGCACAAGAGATCGTAGCCGTCGATCGTCCAGGAGAGTACTCG 210
|||||| |||| ||| | || ||||||||| | ||||| ||||| |||||||||||| |
Sbjct 70 AGAGATAGAAGTGGAAGAGCCCAAGAGATCATGGCCGTGGATCGGCCAGGAGAGTACACA 129
Query 211 GCGTTGTGTAGATGGACGGTTGAGAGCTTCACA---CGTGTCAAAGCTAAGGCACTGTGG 267
|| ||| |||||||||| ||||||||| || ||| ||||||||||||||||||||
Sbjct 130 GCCAAATGTCGATGGACGGTCGAGAGCTTCCCATGTCGTCTCAAAGCTAAGGCACTGTGG 189
Query 268 AGCAAGTACTTCGATGTAGGAGGATACGATTGTCGTCTCTTGGTTTATCCTAGAGGTGAT 327
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 190 AGCAAGTACTTCGATGTAGGAGGCTACGATTGTCGTCTCTTGGTTTACCCTAGAGGTGAC 249
Query 328 TCTCAGGCTCTTCCTGGTTACATCAGCATCTATCTTCAGATCATGGACCCTAGAGGAACC 387
|| || || |||| ||| |||||||||||||| ||||||||||| |||||| ||||||||
Sbjct 250 TCACAAGCCCTTCGTGGCTACATCAGCATCTACCTTCAGATCATTGACCCTCGAGGAACC 309
Query 388 ACTTCGTCTCGT-TGGGATTGTTTCGCTAGCTATCGTCTCTCTATCGTTAATCTTGTCGA 446
||||| |||| | ||||| |||||| ||||||| || ||||||||||| || | ||||||
Sbjct 310 ACTTCATCTC-TATGGGACTGTTTCTCTAGCTACCGACTCTCTATCGTCAACCATGTCGA 368
Query 447 TGATTCTTTAACAATCCATAAGGATTCTTGGCATAGATTCTCTAGTAAGAAGAAATCTCA 506
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 369 TGATTCATTCACAATCCATAAGGATTCTTGGCATAGATTCTCTAGTAAGAAGAAATCTCA 428
Query 507 TGGATGGTGTGATTTCACCTTGAACTCTAGCATTTTGGATCCTAAGATGGGTTTTTTGTT 566
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 429 TGGATGGTGTGATTTCACCTTAAACTCTAGCATTTTGGATCCTAAGATTGGTTTTTTGTT 488
Query 567 TAACAATGA-TTCGTTGCTTATCACTGCTGATATCTTGATTCTAAACGAGTCTGTGAGCT 625
||||||||| ||| ||||||||||| ||||||||||||||||| || ||||| |||||||
Sbjct 489 TAACAATGATTTC-TTGCTTATCACGGCTGATATCTTGATTCTTAATGAGTCCGTGAGCT 547
Query 626 TTAGTCGTGATAATAACAATGAGGGGCAATCTTTGTATAAGGAAAATTCCATAGCTGGAC 685
||||| || |||||||||| | | || | |||||||||||||||||
Sbjct 548 TTAGTATTGGTAATAACAAT-----G--A-----GT-T-----AAATTCCATAGCTGGAC 589
Query 686 CAATGCCGGATGTGTTGAGTGGGAAGTTCACTTGGAAGGTAAATAATTTTAGTTTGTTTA 745
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 590 CAATGCCTGATGTGTTGAGTGGGAAGTTCACTTGGAAGGTAAATAATTTTAGCTTGTTTA 649
Query 746 AGGATATGATAAAGACGCAGAAGATTATGAGCCCTGTTTTCCCAGCTGGGGAGTGTAATT 805
|||||||||||||||| |||||||| | ||||||||||| |||||||||||| || |||
Sbjct 650 AGGATATGATAAAGACACAGAAGATAACAAGCCCTGTTTTTCCAGCTGGGGAGAGTTATT 709
Query 806 TGAGGATCAGTG-TGTACCAGAGTGTTGTTAATTCGCAAGAATATATATCAATGTGTTTG 864
|||||||| ||| | ||||||||||| |||||| |||||| || |||| |||||||||
Sbjct 710 TGAGGATCTGTGCT-TACCAGAGTGTGGTTAATGAGCAAGAGTACCTATCCATGTGTTTG 768
Query 865 GAGAGTAAAGAGACTGAGAAGACT-TTGGTT-TCAGATAGGAGCTGTTGGTGTTTGTTTA 922
|| |||| || || || |||||| || || || || | |||| |||||||||||||||
Sbjct 769 GACAGTAGTGATACCGAAAAGACTGTT--TTATCGGACAAGAGCAGTTGGTGTTTGTTTA 826
Query 923 GGATGTCAGCTTTGAATCAGAAGCCTGGTTGCACTCACATGCATAGGGATTCATATGGCA 982
| |||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| |
Sbjct 827 GCATGTCAGCTTTGAATCAGAAGCCTGGGTGCACTCACATGCATAGAGATTCGTATGGGA 886
Query 983 GGTTTGCTGCTGATAATAAGAGTGGGGACAATACGAGCTTGGGCTGGAATGATTACATGA 1042
|||||||| ||||||||||||| ||||||||||| ||| |||||||||||||||||||||
Sbjct 887 GGTTTGCTTCTGATAATAAGAGCGGGGACAATACAAGCGTGGGCTGGAATGATTACATGA 946
Query 1043 AAATGTCTGAGTTTGTGAACCCGGAAGCTGGGTTTTTACTCGATGATATGGCTGTCTTTA 1102
|||||||||| ||||||||||||||||| ||||||||||||||||| | |||||||||||
Sbjct 947 AAATGTCTGACTTTGTGAACCCGGAAGCAGGGTTTTTACTCGATGACACGGCTGTCTTTA 1006
Query 1103 GCACTTCGTTTCATGTTATTAAAGAGTTCAGTAGCTTTACTAAGAATGGTGGGTTGATTG 1162
|||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1007 GCACCTCATTTCATGTTATCAAAGAGTTCAGTAGCTTTACTAAGAATGGTGGGTTGATTG 1066
Query 1163 GGGGAAGGAATGGGGCTGGAGCTAGGAAGTCAGATGGACACATGGGAAAATTCACTTGGA 1222
|||||||||| | ||| ||| | | | |||||||||||||||||||||||||||
Sbjct 1067 AGGGAAGGAAT---G--GGA-CTA-G-A---A-ATGGACACATGGGAAAATTCACTTGGA 1114
Query 1223 GAATTGAAAATTTCACAAGGTTAAAGGATCTTCTAAAGAAGAGGAAGATAACAGGTCTTT 1282
||||||||||||||||||||||| | ||||||| |||| ||||||||||| | |||||
Sbjct 1115 GAATTGAAAATTTCACAAGGTTAGTGAATCTTCTGGAGAAAAGGAAGATAACCGATCTTT 1174
Query 1283 GCATCAAAAGTAAGAGGTTTCAAATTGGGAACCGGGATTGTCGACTTATTGTTTATCCCC 1342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1175 GCATCAAAAGTAAGAGGTTTCAAATTGGGAACCGGGATTGTCGACTTATTGTTTATCCCC 1234
Query 1343 GAGGGCAGTCCCAGCCACCATG-C--CATCTTTCAGTATTTCTTGAAGTGACAGATTCAC 1399
|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1235 GAGGGCAGTCCCAGCCACCATGCCTTCATCTTTCAGTATTTCTTGAAGTGACAGATTCAC 1294
Query 1400 GAAGCTC-A--AGTGATTGGAGCTGTTTTGTTAGCCACCGACTATCAGTTGTGAACCAGA 1456
||||||| | |||||||||||||||||||||||||||| |||||||||||| ||||| |
Sbjct 1295 GAAGCTCTAGTAGTGATTGGAGCTGTTTTGTTAGCCACCAACTATCAGTTGTTAACCAAA 1354
Query 1457 GATTGGAGGAGAAGTCGGTGACAAAAGAATCTCAGAATCGCTACTCGAAAGCTGCAAAGG 1516
||| ||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1355 GATCAGAGGAGATGTCAGTGACAAAGGAATCTCAGAATCGCTACTCGAAAGCTGCAAAGG 1414
Query 1517 ATTGGGGTTGGCGTGAGTTTGTGACACTTACTAGTTTGTTTGATCAAGACTCTGGCTTTC 1576
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1415 ATTGGGGTTGGCGTGAGTTTGTGACACTTACTAGTTTGTTTGATCAAGACTCTGGATTTC 1474
Query 1577 TTGTTCAAGACACTGTTGTTTTCTCCGCTGAGGTTCTTATTTTGAAAGAGACATCTGCTA 1636
||||||||||| |||||||||||||||| |||||||||||||||||||| |||||| |||
Sbjct 1475 TTGTTCAAGACTCTGTTGTTTTCTCCGCGGAGGTTCTTATTTTGAAAGAAACATCT-CTA 1533
Query 1637 -CAAAAGAGTAT-GTGGAGGCAGACTCAACTAATTCAGTTTCTCCGACTGATAACAGCGT 1694
||||||| || | ||||||||| ||| ||||||||||||| | | |||||||| |||
Sbjct 1534 ACAAAAGACTACAG-GGAGGCAGAATCAGCTAATTCAGTTTCACAAATTGATAACACCGT 1592
Query 1695 CaaaaaaaGTTCATTTACTTGGAAAGTGGAAAATTTCTTAGCCTTCAAAGAGATAATGGA 1754
|||| |||||||||||||||||||||| |||||||| |||||||| || || |||||
Sbjct 1593 GAAAA---GTTCATTTACTTGGAAAGTGGAGAATTTCTTGGCCTTCAAGGAAATCATGGA 1649
Query 1755 AACACGAAAGATTTTTAGCAAATTCTTTCAGGCTGGTGGATGTGAACTCCGGATTGGTGT 1814
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1650 AACACGAAAGATTTTTAGCAAATTCTTTCAGGCTGGTGGATGTGAACTTCGGATTGGTGT 1709
Query 1815 ATATGAGTCCTTTGACACCATATGCATATATTTAGAGAGTGATCAATCTGCGGGTACAGA 1874
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1710 ATACGAGTCCTTTGACACCATATGCATATATTTAGAGAGTGATCAATCTGCAGGTACAGA 1769
Query 1875 TGTGGACAATAATTTCTGGGTTAAGTACAAGATGGGTATTCTGAACCAAAAGAATCCGGC 1934
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1770 TGTGGACAATAATTTCTGGGTTAAGTACAAGATGGGTATTCTCAACCAAAAGAATCCTGC 1829
Query 1935 CAAAAGTGTGTGGAAGGAGTCATCTATATGTACCAAGACATGGAATAATTCCGTTCTACA 1994
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1830 CAAAAGTGTGTGGAAGGAGTCATCTATATGTACCAAGACATGGAATAATTCTGTTCTACA 1889
Query 1995 GTTTATGAAGGTGTCTGACATGTTGGAGGCTGATGCTGGGTTTCTTGTGCGTGACACAGT 2054
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1890 GTTTATGAAGGTGTCTGACATGTTGGAGGCTGATGCTGGGTTTCTTGTGCGTGACACTGT 1949
Query 2055 TGTGTTTGTGTGTGAAATATTGGATTGTTGTCCTTGGTTTGAGTTTTCAGACCTAG-A-- 2111
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1950 TGTTTTTGTATGTGAAATATTGGATTGTTGTCCTTGGTTTGAGTTTTCAGACCTAATAAT 2009
Query 2112 GGTACTGGCTTCAGATGATGACCAAG---ATGCCTTAACCACTGATCCTGATGAAATTAT 2168
|||||||||||||||||||||||||| |||||| | |||| ||||||||||||||||
Sbjct 2010 GGTACTGGCTTCAGATGATGACCAAGCTGATGCCTCAGCCACCAATCCTGATGAAATTAT 2069
Query 2169 TGATTCTGAGGAAAGTGAGGGCATAAGCGGAGATGAGGAAGACACATTTCGAGATTTTCT 2228
|||||||||||||| | | | | | | | || |||||| | |||||||||
Sbjct 2070 GGATTCTGAGGAAAG-G-G---A---G-G-A-A-GA------CACATTCCAAGATTTTCT 2111
Query 2229 TTCCCGAGCTGGATTC-CATCTCACGTTTGGGGAGAATCCTTCACAACCACAAGTTACTC 2287
| | ||||||||| || | |||| || |||| |||||||| ||||||| |||||||||||
Sbjct 2112 TGCGCGAGCTGGAATCAC-TCTCCCGCTTGGAGAGAATCCGTCACAACTACAAGTTACTC 2170
Query 2288 TCCGTGAGAAGCTTCTAATGGATGCGGGTGCAATTGCTGGGTTTCTTACTGGCTTGCGTG 2347
||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2171 TCCAAGAGAAGCTTCTAATGGATGCGGGTGCAATTGCTGGTTTTCTTACTGGCTTGCGTG 2230
Query 2348 TATATCTTGATGACCCAACTAAAGTAAAGCGTTTACTTCTTCCGACTAAAATATCTTGTA 2407
| ||||||||||| || ||||||| ||||||||||||||| |||||||||||||| |
Sbjct 2231 TTTATCTTGATGATCCTACTAAAGCAAAGCGTTTACTTCTCCCGACTAAAATATC----A 2286
Query 2408 ATGATAGAAGCAAGCTAATAAAGAGTGATGAATCTTCCCCTAGCCTAATGAATTTGCTGA 2467
| | |||| ||| |||||||||||||||||| | ||||| |||||||||||||
Sbjct 2287 A-G-------CAAGTTAACAAAGAGTGATGAATCTTCAGCAAGCCTGATGAATTTGCTGA 2338
Query 2468 TGGGTGTTAAAGTTCTACAGCAAGCCATTATTGATTTACTTCTAGATATTATGGTTGAGT 2527
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2339 TGGGTGTTAAAGTTCTACAGCAAGCAATTATTGATTTACTTCTAGATATTATGGTTGAGT 2398
Query 2528 GTTGCCAACCTTCAGA-GGAAGGCTCTCA 2555
||||||||||| | || ||||||||||||
Sbjct 2399 GTTGCCAACCTCC-GAAGGAAGGCTCTCA 2426
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 193903334435
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5