BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25350.1
Length=1932
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320337 jgi|Araly1|320337|fgenesh1_pm.C_scaffold_4000394 1895 0.0
> Ahg320337 jgi|Araly1|320337|fgenesh1_pm.C_scaffold_4000394
Length=2109
Score = 1895 bits (1026), Expect = 0.0
Identities = 1292/1413 (91%), Gaps = 48/1413 (3%)
Strand=Plus/Plus
Query 388 AGAAGGTGCTCTCTGGAGGATTGGATGACGAAGTTGTTATCTGATATAGAATTGGCAAGA 447
||||||| |||||||||||| |||||||||||| | |||||| ||||||||||||| |||
Sbjct 235 AGAAGGTACTCTCTGGAGGACTGGATGACGAAGCTATTATCTAATATAGAATTGGCTAGA 294
Query 448 AGTGTTGTAGTTGCATCCTTCCTCGAACTAGAAGCTACTGCTAGGTCTGCATGCCAAGTT 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 AGTGTTGTAGTTGCATCCTTCCTCGAACTAGAAGCTACTGCTAGGTCTGCATGCCAAGTT 354
Query 508 GTAGATCAGAATGCTTCCGATTCCAATGATGATGGAAATAGCACAAGCTTGTCGTCTCTA 567
||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||
Sbjct 355 GTAGATCAGAATGCTTCTGATTCCAATGATGATGGAAATATCACAAGCTTATCGTCTCTG 414
Query 568 GTTCACCC-------A-------A-ATTCTGGTGGCAGTTCTTTGCTCTCATCTGACTAT 612
|||||||| | | |||||||||||||||||||||||||||||||||||
Sbjct 415 GTTCACCCAAATTTGAGCTTTTTACATTCTGGTGGCAGTTCTTTGCTCTCATCTGACTAT 474
Query 613 GGCAGCGATACTGCTTATGAAACATCTGAGCTCGGATCAGCAAGTTTAGGTCAGGATGAT 672
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 475 AGCAGCGATACTGCTTATGAAACATCTGAGCTTGGATCAGCAAGTTTAGGTCAGGATGAT 534
Query 673 GTTTCTGAAACTGATACTGGAGATCTAACTTTGGATGAAGATCTGACAAATCCAACAGAG 732
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 535 GTTTCTGAAACTGGTACTGGAGATCTAACTTTGGATGCAGATCTGACAAATCCAACAGAG 594
Query 733 AAGCTTGTAAAGTTTAGCATGTCCAACATTGACGAGGGACTGAGTATGAGTCAAACTATT 792
||||| || ||||||| |||||||||||||||| |||||||||||||||| |||||||||
Sbjct 595 AAGCTCGTCAAGTTTACCATGTCCAACATTGACAAGGGACTGAGTATGAGCCAAACTATT 654
Query 793 ATCGAGCAGCTAGAAGATTTTCCTAAGCACAGAGTCCATTTAGGATATGCCAATGATATC 852
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 655 ATCGAGCAGCTAGATGATTTTCCTAAGCACAGAGTCCACTTAGGATATGCCAATGATATC 714
Query 853 ACAGAGACGAATTCGTACAATGGAAAAGCTTCTAAAGGTGTATTTCGAGCAAACAACGAC 912
|||||| | |||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 715 ACAGAGGCAAATTTGTACAATGGAAAAGCTTCTAAAGGTGTATTTCGAGCAAACGACGAC 774
Query 913 TTACGGTGTCGCTCTGAATCAGAAACTAGTCACTCAGTGATGCATGATCGAAAGCTTTCT 972
||||| ||| ||||||||||||||| ||||| ||||||||||||||| |||||||||||
Sbjct 775 TTACGACGTCTCTCTGAATCAGAAACAAGTCAATCAGTGATGCATGATAGAAAGCTTTCT 834
Query 973 -CTTGAGAGCGCTGACGGGGTTT-CGTTACTAGCCGGTGAGACATCAACCTCTAGTATCT 1030
| |||||||||| || | |||| | | |||||||||||||||||||| || ||
Sbjct 835 GC-TGAGAGCGCTAAC-GAGTTTCCATCACTAGCCGGTGAGACATCAA--TC-----TC- 884
Query 1031 TGAGCTCCATTGTACATAGCCAGCTGGATGTTA-ATCATGATATATCTGTTGGTAACCTG 1089
| | || || ||||||||||| || |||||| ||||||||||||| |||||
Sbjct 885 T--G-------GT--AT--CCAGCTGGATG-TACATCATGGTATATCTGTTGGTGACCTG 930
Query 1090 GAGATACCGGGTAATGGACGAATAGTTCTCCCGCTGAAAATGCATAGTAAATTAAATAGG 1149
||||| ||||||| ||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 931 GAGATGCCGGGTAGTGGACGAATAGTTCTCCCGCTGAAAATGCTTAATAAATTAAATAGG 990
Query 1150 ATTCTATTAACTATGAATGAGAGACTTCTCAATTCAAAAACAGACATGGAGGATCTTATA 1209
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 991 ATTCTATTAACTATGAATGAGAGACTTGTCAATTCAAAAACAGACATGGAGGATCTTATA 1050
Query 1210 GCGAGACTAAATCAAGAGACAGCGGTGAAGGAATATCTGAACAGAAAGGTTGATGATCTG 1269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1051 GCGAGACTAAATCAAGAGACAGCGGTGAAGGAATATCTGAACAGAAAGGTTGATGATCTG 1110
Query 1270 GAAGTGGAACTTGAAACTACTAAACAGAGAAACAAAGAGAATTTGGAGCAAGCTTTGATG 1329
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1111 GAAGTGGAACTTGAAACTACTAAACAGAGAAACAAAGAGAATTTGGAACAAGCTTTGATG 1170
Query 1330 ACCGAGA-GACAGAGTGTTACCAAGATGCAGTGGGATATGGAAGAACTCAGGCAAAAAAC 1388
|| |||| | |||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1171 ACTGAGAAG-CAGAGTGTTACCCAGATGCAGTGGGATATGGAAGAATTCAGGCAAAAAAC 1229
Query 1389 TTTTGAGATGGAACTGAAGTTAAAGTCAAAAGAGGATGGGAG-TTCAGATTCTAAGACGT 1447
||||||||||||||||||||||||||||||||||||| |||| || | || ||||| | |
Sbjct 1230 TTTTGAGATGGAACTGAAGTTAAAGTCAAAAGAGGATAGGAGCTT-ACATGCTAAGCCTT 1288
Query 1448 CAGGAAACTCAACAATCTCTGAGAGCCATGAGCTGTTACAAGAAATGGATGCCACAAAAC 1507
||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 1289 CAGGAAACTCAACAATCGGTGAGAGCCATGAGCTGATACAAGAAATGGATGCCACAAAAC 1348
Query 1508 AGCAACTGGAAGATCTTTCTAGACGGTATGTTGAACTGGAGGCAAAATCAAAGGCAGACA 1567
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1349 AGCAACTGGAAGATCTTTCTAGACGGTATGTTGAACTGGAGTCAAAATCAAAGGCAGACA 1408
Query 1568 TAAAAGTGCTTGTCAGAGAGGTCAAATCCCTGAGACGTTCACATATGGAAATGGAAAAGG 1627
|||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1409 TAAAGGTGCTTGTCAGAGAGGTCAAATCCCTGAGACGTTCACATATGGAGCTAGAAAAGG 1468
Query 1628 AACTGACTCGATCGCTGACAGAGAAGTCTGACACTGAGAAACTCCTCCAACAGGAAAGGA 1687
| ||| ||||||| |||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 1469 AGCTGTCTCGATCTCTGACAGAGAAGTCAGACACTAAGAAACTCCTCCAACAGGAAAGGA 1528
Query 1688 TAATAGTCGAGAACACGCTAGAAGCAAGAAGAAGGCTG-TATAGTGACTGTGAAATTCTC 1746
|||||||||||||| |||||||||||||| || | || | ||||||||| ||||||||
Sbjct 1529 AAATAGTCGAGAACAAGCTAGAAGCAAGAAAAAAGTTGGT-TAGTGACTGCAAAATTCTC 1587
Query 1747 CACGACAGGCTTAAAGTGAACAACACAAACTTG 1779
|| |||||||||||||| |||||||||||||||
Sbjct 1588 CATGACAGGCTTAAAGTCAACAACACAAACTTG 1620
Score = 65.8 bits (35), Expect = 1e-09
Identities = 35/35 (100%), Gaps = 0/35 (0%)
Strand=Plus/Plus
Query 1817 CTGAAGTATCAAATGCCTTGCAAGATCAGATTGAG 1851
|||||||||||||||||||||||||||||||||||
Sbjct 1631 CTGAAGTATCAAATGCCTTGCAAGATCAGATTGAG 1665
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72600006970
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5