BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25360.1
Length=1122
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932690 jgi|Araly1|932690|scaffold_400678.1 405 3e-112
Ahg932730 jgi|Araly1|932730|scaffold_400718.1 235 5e-61
> Ahg932690 jgi|Araly1|932690|scaffold_400678.1
Length=494
Score = 405 bits (219), Expect = 3e-112
Identities = 396/476 (83%), Gaps = 34/476 (7%)
Strand=Plus/Plus
Query 530 GCCCATATCCAAACTGCTCAATGCTAATGTCCAAAACCGAGCT-T-T---CT-A--G-TG 580
|||||||||||||||| |||||| | ||||||||||||||||| | | | | | ||
Sbjct 1 GCCCATATCCAAACTGTTCAATGTTGATGTCCAAAACCGAGCTCTCTAAATTAACCGATG 60
Query 581 AA---TCCGACCTATCCAATGACCGTTCTTGTGTCAAATGTTGTGGACTCTTCTGCATTG 637
|| || |||| |||||||| | | |||||| |||| | |||||||||||||||||
Sbjct 61 AAGCGTCAGACCAATCCAATGTTAGGACATGTGTCCAATGCTATGGACTCTTCTGCATTG 120
Query 638 ATTGCAAAGTACCATCACATTCTGATTTGTCGTGTGCTGAGTACAAAAAACTTCACCATG 697
|||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||| ||
Sbjct 121 ATTGCAAAGTACCATCGCATTCTGATTTGTCGTGTGCTGATTACAAGAAACTTCACCCTG 180
Query 698 ACCCTCTAGTTGATGAGTTGAAGCTAAAGTCTCTAGCAAAGGACAAAAAATGGCGTCAGT 757
|||||||| ||||||| ||||||||||||| ||| |||| ||||||||| ||||||||||
Sbjct 181 ACCCTCTAATTGATGACTTGAAGCTAAAGTTTCTGGCAATGGACAAAAAGTGGCGTCAGT 240
Query 758 GT-AAAATGTGTAGGCACATGATCGAACTTTCTCATGCCTGCAACCACATGACTTGCAGA 816
|| ||| ||||| | ||||||| ||||||||| ||| ||||||||||||||||||||||
Sbjct 241 GTGTAAA-GTGTAAGAACATGATTGAACTTTCTTATGGCTGCAACCACATGACTTGCAGA 299
Query 817 TGTGGATATCAGTTTTG-TTACCAATGTGAGG-TTGAATGGAAGAATGA-CCAAAAGACT 873
||||||||||||||||| || |||||||| || ||||||||||||| || ||| | ||||
Sbjct 300 TGTGGATATCAGTTTTGCTT-CCAATGTG-GGATTGAATGGAAGAA-GAACCAGAGGACT 356
Query 874 TGCTCTTCTGGT---TGCCTACTAACGGGACATGGTTATTATGATGATTATGATTATAAT 930
||| |||||| | ||||||| ||||||||||||| ||||||||||| |||| | |
Sbjct 357 TGCCCTTCTGCTGGATGCCTACAAACGGGACATGGTGATTATGATGATGATGACCA-A-- 413
Query 931 GAACCGGAATATGATTTTGAAGTAG-ATACATGTAATTACTATTCTGATGAAGAAG 985
||| ||||||| ||||| || |||| || |||||| ||| ||||||||||
Sbjct 414 GAA------TATGATTCTGAAG-AGGATACGGGTGATTACTCTTCCGATGAAGAAG 462
> Ahg932730 jgi|Araly1|932730|scaffold_400718.1
Length=490
Score = 235 bits (127), Expect = 5e-61
Identities = 215/255 (84%), Gaps = 16/255 (6%)
Strand=Plus/Plus
Query 448 AAGGTTTTGACA-TTAGAGCTGATTGAGATGTGGAAACAAAAGATGAAAGAGGACTCGAT 506
||| |||||||| | |||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 234 AAGTTTTTGACACCT-GAGCTGATAGAGATGTGGAAACAAAAGATGAGAGAGGACTCGAT 292
Query 507 TCCCGCTGCAGAGAGAATCTATTGCCCATATCCAAACTGCTCAATGC-TAATGTCCAAAA 565
||| |||| ||||||||||||||||||||||||||| |||||||| | | ||||| ||||
Sbjct 293 TCCAGCTGAAGAGAGAATCTATTGCCCATATCCAAAATGCTCAAT-CTTGATGTCTAAAA 351
Query 566 CCGAGCTTTCTAG---TG--AAT-----C-C-GACCTATCCAATGACCGTTCTTGTGTCA 613
|||||||||| || || ||| | | || | |||||||| || | ||| |||
Sbjct 352 CCGAGCTTTCAAGATCTGCTAATGAAGCCTCAGATCAATCCAATGTTCGGACATGTATCA 411
Query 614 AATGTTGTGGACTCTTCTGCATTGATTGCAAAGTACCATCACATTCTGATTTGTCGTGTG 673
| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 412 AGTGTTGTGGACTCTTTTGCATTGATTGCAAAGTACCATCACATTCTGTTTTGTCGTGAG 471
Query 674 CTGAGTACAAAAAAC 688
|||| ||||| ||||
Sbjct 472 CTGATTACAAGAAAC 486
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41820839949
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5