BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G25380.1 Length=1395 Score E Sequences producing significant alignments: (Bits) Value Ahg932690 jgi|Araly1|932690|scaffold_400678.1 409 3e-113 > Ahg932690 jgi|Araly1|932690|scaffold_400678.1 Length=494 Score = 409 bits (221), Expect = 3e-113 Identities = 352/414 (85%), Gaps = 13/414 (3%) Strand=Plus/Plus Query 848 GCCCATATCCAAACTGCTCATTGTTGATGTCCATAACCGAGCTTTCGAGCTCT-TCTGAT 906 |||||||||||||||| ||| |||||||||||| ||||||||| || | | | | ||| Sbjct 1 GCCCATATCCAAACTGTTCAATGTTGATGTCCAAAACCGAGCTCTCTAAAT-TAACCGAT 59 Query 907 GAAGCCTTGGACCAATCCAATGTTAGGACATGTGTCAAATGCAATGGACTCTTCTGCATT 966 ||||| | ||||||||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 60 GAAGCGTCAGACCAATCCAATGTTAGGACATGTGTCCAATGCTATGGACTCTTCTGCATT 119 Query 967 GATTGTAAAGTACCATCACATTCTGATTTGTCGTGTGCTGATTACAAGAAACTTCACCCT 1026 ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 120 GATTGCAAAGTACCATCGCATTCTGATTTGTCGTGTGCTGATTACAAGAAACTTCACCCT 179 Query 1027 GAACTTTTAGTTGATGACATAAAGCTAAAGTTACTGGCAAACGA-AAATATGTGGCGTCA 1085 || | | || |||||||| | ||||||||||| ||||||| || ||| | ||||||||| Sbjct 180 GACCCTCTAATTGATGACTTGAAGCTAAAGTTTCTGGCAATGGACAAAAA-GTGGCGTCA 238 Query 1086 ATGTGTCATGTGTAGGCACTTGATTGAACTTTCTGATGGTTGCAATCACATGACTTGCAG 1145 ||||| | ||||| | || |||||||||||||| |||| ||||| |||||||||||||| Sbjct 239 GTGTGTAAAGTGTAAGAACATGATTGAACTTTCTTATGGCTGCAACCACATGACTTGCAG 298 Query 1146 ATGTGGATATCAGTTTTGCTATGGA-TGTGGAATCGAATGGAAGAAAAACCA-AGACACT 1203 |||||||||||||||||||| | | ||||| || ||||||||||| ||||| || ||| Sbjct 299 ATGTGGATATCAGTTTTGCT-TCCAATGTGGGATTGAATGGAAGAAGAACCAGAGG-ACT 356 Query 1204 TGCCCTTCTGGT---TGCCGGGAAATGGGACACGGtgatgctgat-agtgatga 1253 |||||||||| | |||| ||| |||||| |||||| |||| | |||||| Sbjct 357 TGCCCTTCTGCTGGATGCCTACAAACGGGACATGGTGATTATGATGA-TGATGA 409 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52145545405 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5