BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G25380.1

Length=1395
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg932690 jgi|Araly1|932690|scaffold_400678.1                        409    3e-113


> Ahg932690 jgi|Araly1|932690|scaffold_400678.1
Length=494

 Score =  409 bits (221),  Expect = 3e-113
 Identities = 352/414 (85%), Gaps = 13/414 (3%)
 Strand=Plus/Plus

Query  848   GCCCATATCCAAACTGCTCATTGTTGATGTCCATAACCGAGCTTTCGAGCTCT-TCTGAT  906
             |||||||||||||||| ||| |||||||||||| ||||||||| || |  | |  | |||
Sbjct  1     GCCCATATCCAAACTGTTCAATGTTGATGTCCAAAACCGAGCTCTCTAAAT-TAACCGAT  59

Query  907   GAAGCCTTGGACCAATCCAATGTTAGGACATGTGTCAAATGCAATGGACTCTTCTGCATT  966
             ||||| |  ||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct  60    GAAGCGTCAGACCAATCCAATGTTAGGACATGTGTCCAATGCTATGGACTCTTCTGCATT  119

Query  967   GATTGTAAAGTACCATCACATTCTGATTTGTCGTGTGCTGATTACAAGAAACTTCACCCT  1026
             ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  120   GATTGCAAAGTACCATCGCATTCTGATTTGTCGTGTGCTGATTACAAGAAACTTCACCCT  179

Query  1027  GAACTTTTAGTTGATGACATAAAGCTAAAGTTACTGGCAAACGA-AAATATGTGGCGTCA  1085
             || | | || |||||||| | ||||||||||| |||||||  || ||| | |||||||||
Sbjct  180   GACCCTCTAATTGATGACTTGAAGCTAAAGTTTCTGGCAATGGACAAAAA-GTGGCGTCA  238

Query  1086  ATGTGTCATGTGTAGGCACTTGATTGAACTTTCTGATGGTTGCAATCACATGACTTGCAG  1145
              ||||| | ||||| | || |||||||||||||| |||| ||||| ||||||||||||||
Sbjct  239   GTGTGTAAAGTGTAAGAACATGATTGAACTTTCTTATGGCTGCAACCACATGACTTGCAG  298

Query  1146  ATGTGGATATCAGTTTTGCTATGGA-TGTGGAATCGAATGGAAGAAAAACCA-AGACACT  1203
             |||||||||||||||||||| |  | ||||| || ||||||||||| ||||| ||  |||
Sbjct  299   ATGTGGATATCAGTTTTGCT-TCCAATGTGGGATTGAATGGAAGAAGAACCAGAGG-ACT  356

Query  1204  TGCCCTTCTGGT---TGCCGGGAAATGGGACACGGtgatgctgat-agtgatga  1253
             |||||||||| |   ||||   ||| |||||| ||||||  |||| | ||||||
Sbjct  357   TGCCCTTCTGCTGGATGCCTACAAACGGGACATGGTGATTATGATGA-TGATGA  409



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 52145545405


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5