BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25390.1
Length=603
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932692 jgi|Araly1|932692|scaffold_400680.1 619 6e-177
> Ahg932692 jgi|Araly1|932692|scaffold_400680.1
Length=1096
Score = 619 bits (335), Expect = 6e-177
Identities = 519/605 (86%), Gaps = 24/605 (4%)
Strand=Plus/Plus
Query 1 ATGATTTGGCGATTGCTCCAATGTTGCAAACCTCTTCGTCCTGTATTTGACGCTGGGATT 60
|||||||||||| || ||||||||| ||||||| ||||||| || ||||| | |||||||
Sbjct 495 ATGATTTGGCGAATGATCCAATGTTCCAAACCTTTTCGTCCAGTGTTTGATGGTGGGATT 554
Query 61 TGCATCAATGG-TGTTTTGTATTATCTCGGTAAGCTCAATTGCGATAGGGAGGATTTTGT 119
||||||||||| || ||||| |||| | |||||||||||||||||| | |||||| ||||
Sbjct 555 TGCATCAATGGTTG-TTTGTGTTATTTTGGTAAGCTCAATTGCGATCGAGAGGATGTTGT 613
Query 120 TATAGTTTGTTTTGATGTCAAGTCCGAGAAGTTGAGCTTTATCGGCGAA-C--TTGGCA- 175
|||||||||||||||||| | | ||||||||||||||||||| | || | ||||
Sbjct 614 TATAGTTTGTTTTGATGTTAGGAATGAGAAGTTGAGCTTTATCGACAAACCGAAGGGCAT 673
Query 176 GATTAGATATCAAACACT-AGTCGAAACTGATTAACCAGAAGGGTCAATTGGGTATATGT 234
|| ||| | | ||| | | |||||| |||||||||| | ||||||| |||||||||| |
Sbjct 674 GA-TAG-T-T-AAATA-TGAGTCGAGACTGATTAACTACAAGGGTCGGTTGGGTATATTT 728
Query 235 CAGTGTTCAAACTCGGGGAAAATTGA-TTGAACCAGTAAAAGTTTTGATTTGTGGATTCT 293
|||||||||||||||||| |||| | | ||| |||||||||||||||||||| ||||||
Sbjct 729 CAGTGTTCAAACTCGGGGTTAATT-ACTCGAAGCAGTAAAAGTTTTGATTTGTTGATTCT 787
Query 294 TGAGGATGTCAAGAAAAATACATGGACGAAGCGTATCTATGTATTGCCTTTTATGTGGTG 353
||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||| |
Sbjct 788 TGAGGATGTCAAGAAAAATGGATGGACGAAGCGTAGCTATGTATTGCCTTTTGTGTGGAG 847
Query 354 GAATATCGTTG---CGACCACCAAGTTGCGCATTGTTGGAATGATTGGTACTA-GTGAAA 409
||||| |||| || || ||| |||| ||||||||||||| |||||| | ||||||
Sbjct 848 CAATATGGTTGAATATACTACTAAGCTGCGTATTGTTGGAATGAATGGTAC-ATGTGAAA 906
Query 410 TTGTGTTGTCGCCGTATGATCTATCTGA-C--CCTTATTATCTTTTCTACTACAATCTCG 466
|||||||||||||||||| | ||||||| | ||||||||||||||||||||||||||||
Sbjct 907 TTGTGTTGTCGCCGTATGGTTTATCTGACCGGCCTTATTATCTTTTCTACTACAATCTCG 966
Query 467 AGACGAACAATGTTAGGGAAGTTGGAATCCAAGGACTTGGAGCGTTTGAGACTAGTACAG 526
||| ||| | ||||||| |||||| |||||||||||||||||||||| |||| |||||||
Sbjct 967 AGATGAATAGTGTTAGGAAAGTTGAAATCCAAGGACTTGGAGCGTTTAAGACCAGTACAG 1026
Query 527 TAGTTCACTTATTTGTAGATTACGAAGAAGATGTGAAGTT-ATATGAGTGTTTGAAGATT 585
||| ||||||||| |||||||||| ||||||||||||||| |||| ||||||| ||||||
Sbjct 1027 TAGCTCACTTATTCGTAGATTACGTAGAAGATGTGAAGTTTATATAAGTGTTT-AAGATT 1085
Query 586 TGGCT 590
|||||
Sbjct 1086 TGGCT 1090
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22092086031
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5